sumo_run

#!/bin/bash
#
# SUMO_RUN: Run loop over SUSE-SUMO-SUIB
# ============================================== 
# Jon Grumer, Uppsala University, 2019
# jongrumer@gmail.com / jon.grumer@physics.uu.se

# Instructions
# ------------
#     0 : Make sure you have installed libblas-dev, liblapack-dev and openmpi-dev
#     1 : Setup the SUMO Makefile and compile all binaries with 'make all'
#     2 : Define and export the variable $SUMODIR (the SUMO root directory), in e.g. ~/.bashrc
#     3 : Add $SUMODIR to your PATH, e.g. in ~/.bashrc, to make all executbles available
#     4 : Make and cd to a dir where you are going to carry out the calculation
#     5 : Setup the main parameters below, and run this script.

# Setup - Main Parameters
# -----------------------
# Example: 1 4 4 example iptest2_600 y n 500 10000 1 100000000 1 1 1
# Arg 1 : Max Iterations
          NMAX_ITER=1                    
#     2 : Nr + 1 (also make sure Nr in INFILE is NR_PLUS_ONE - 1)
          NR_PLUS_ONE=4                    
#     3 : Number of procs for MC
          NPPROC_MC=4                    
#     4 : Case Identifier
          ID="example"             
#     5 : Input file
          INFILE="iptest2_600"
#     6 : Do gamma dep?
          GAMMADEP="y"
#     7 : Iterative?
          ITERATIVE="n"
#     8 : wl min
          WLMIN=500
#     9 : wl max
          WLMAX=10000
#    10 : res 1000
          RES1000=1
#    11 : N total
          NTOT=100000000
#    12 : min send
          MIN_SEND=1
#    13 : min send UV
          MIN_SEND_UV=1
#    14 : maxsend
          MAX_SEND=1

# Setup - Folder structure (should be ok)
# ---------------------------------------
#     1 : Export 'DD' dir
export DD=$PWD/dd
#     2 : Create 'DD' directories:
mkdir -p $DD; mkdir -p $DD/mcphotons; mkdir -p $DD/mcphotons/radfield; mkdir -p $DD/modelspectra
#     3 : Get 'DATA' dir if not present
if [ ! -d "$PWD/DATA" ]; then 
   cp -rp $SUMODIR/DATA .
fi
#     4 : Get 'out' dir if not present
if [ ! -d "$PWD/out" ]; then 
   cp -rp $SUMODIR/out .
fi
# Run iterate script
# ------------------------------
if hash iterate.sh 2>/dev/null
then
   iterate.sh $NMAX_ITER $NR_PLUS_ONE $NPPROC_MC $ID $INFILE $GAMMADEP $ITERATIVE $WLMIN $WLMAX $RES1000 $NTOT $MIN_SEND $MIN_SEND_UV $MAX_SEND 
   #&> logfile &
else
   echo
   echo " The SUMO script 'iterate.sh' was not found in your PATH!" 
   echo
   echo " Add SUMO root dir to the PATH variable, eg in '~/.bashrc',"
   echo " and make sure all SUMO scripts and binaries are available."
   echo
fi