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qsub.sh

Simple tool using GNU parallel to run PBS jobs on a single machine.

Usage

The idea of this script is to provide a simple replacement for qsub cluster exection, taking the same arguments as standard PBS/SGE submissions.

###Simple example with a dependency

$ job_align = $( qsub.sh -o align.log -e align.stderr.log job_align & echo $! )
$ qsub.sh -v var1=xyz -o translate.log -e translate.stderr.log -h $job_align job_translate