enhancement of aho-corasick automa with incrementally adding or removing patterns
Maven坐标：
<dependency>
<groupId>io.github.jayzhang</groupId>
<artifactId>aho-corasick-enhance</artifactId>
<version>1.0.0</version>
</dependency>
String text = "The ga3 mutant of Arabidopsis is a gibberellin-responsive dwarf. We present data showing that the ga3-1 mutant is deficient in ent-kaurene oxidase activity, the first cytochrome P450-mediated step in the gibberellin biosynthetic pathway. By using a combination of conventional map-based cloning and random sequencing we identified a putative cytochrome P450 gene mapping to the same location as GA3. Relative to the progenitor line, two ga3 mutant alleles contained single base changes generating in-frame stop codons in the predicted amino acid sequence of the P450. A genomic clone spanning the P450 locus complemented the ga3-2 mutant. The deduced GA3 protein defines an additional class of cytochrome P450 enzymes. The GA3 gene was expressed in all tissues examined, RNA abundance being highest in inflorescence tissue.";
String[] terms = {
"microsome",
"cytochrome",
"cytochrome P450 activity",
"gibberellic acid biosynthesis",
"GA3",
"cytochrome P450",
"oxygen binding",
"AT5G25900.1",
"protein",
"RNA",
"gibberellin",
"Arabidopsis",
"ent-kaurene oxidase activity",
"inflorescence",
"tissue",
"generally",
"famous",
"Europe and many"
};
Trie trie = new Trie();
for(String t : terms)
{
trie.addPattern(t,t);
}
trie.checkBuild();
Collection<Emit> emits = trie.match(text);
emits.stream().forEach(i->System.out.println(i));
trie.match(text, new EmitVisitor() {
@Override
public boolean visit(State state, Emit emit) {
System.out.println(emit);
return true;
}
});