org.Mm.egPFAM is defunct. Please use select() if you need access to PFAM or PROSITE accessions.

[Roger-GOAT]

Hi, great package!
I run this:

data_matrix_normalized <- BITFAM_preprocess(raw_data = seurat@assays$RNA@counts)
BITFAM_res <- BITFAM(data = data_matrix_normalized, species = "mouse", scATAC_obj = NA, 
                     ncores = 30)

Error in (function ()  : 
  org.Mm.egPFAM is defunct. Please use select() if you need access to PFAM or PROSITE accessions.

I search they said: "Using this form PACKAGE::select() (within rstan) should solve this problem for biology-focused users" , But how to do that? thanks!

[gaoshang1102]

It seems like a conflict of function names between org.Mm.eg.db and rstan. Please try without import library(org.Mm.eg.db).