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segmentation_fault while running test_tf_ops.py #79

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Roberto59f opened this issue May 23, 2022 · 0 comments
Open

segmentation_fault while running test_tf_ops.py #79

Roberto59f opened this issue May 23, 2022 · 0 comments

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@Roberto59f
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I am trying to run the test file but i keep getting this error:

`Consolidate compiler generated dependencies of target tf_sampling
[ 40%] Built target tf_sampling
Consolidate compiler generated dependencies of target tf_interpolate
[ 60%] Built target tf_interpolate
Consolidate compiler generated dependencies of target tf_grouping
[100%] Built target tf_grouping
user@ubuntu:/Desktop/Open3D-PointNet2-Semantic3D/tf_ops/build$ cd ..
user@ubuntu:/Desktop/Open3D-PointNet2-Semantic3D/tf_ops$ sudo python3.6 test_tf_ops.py
/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/dtypes.py:516: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint8 = np.dtype([("qint8", np.int8, 1)])
/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/dtypes.py:517: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint8 = np.dtype([("quint8", np.uint8, 1)])
/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/dtypes.py:518: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint16 = np.dtype([("qint16", np.int16, 1)])
/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/dtypes.py:519: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint16 = np.dtype([("quint16", np.uint16, 1)])
/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/dtypes.py:520: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint32 = np.dtype([("qint32", np.int32, 1)])
/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/dtypes.py:525: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
np_resource = np.dtype([("resource", np.ubyte, 1)])
/usr/local/lib/python3.6/dist-packages/tensorboard/compat/tensorflow_stub/dtypes.py:541: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint8 = np.dtype([("qint8", np.int8, 1)])
/usr/local/lib/python3.6/dist-packages/tensorboard/compat/tensorflow_stub/dtypes.py:542: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint8 = np.dtype([("quint8", np.uint8, 1)])
/usr/local/lib/python3.6/dist-packages/tensorboard/compat/tensorflow_stub/dtypes.py:543: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint16 = np.dtype([("qint16", np.int16, 1)])
/usr/local/lib/python3.6/dist-packages/tensorboard/compat/tensorflow_stub/dtypes.py:544: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint16 = np.dtype([("quint16", np.uint16, 1)])
/usr/local/lib/python3.6/dist-packages/tensorboard/compat/tensorflow_stub/dtypes.py:545: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint32 = np.dtype([("qint32", np.int32, 1)])
/usr/local/lib/python3.6/dist-packages/tensorboard/compat/tensorflow_stub/dtypes.py:550: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
np_resource = np.dtype([("resource", np.ubyte, 1)])
Running tests under Python 3.6.15: /usr/bin/python3.6
[ RUN ] TestGrouping.test
/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/tensor_util.py:538: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
tensor_proto.tensor_content = nparray.tostring()
32 512 3 128
Tensor("Const_1:0", shape=(32, 512, 3), dtype=float32, device=/device:GPU:0) (32, 1, 512, 3)
Tensor("Sum:0", shape=(32, 128, 512), dtype=float32, device=/device:GPU:0) 64
Fatal Python error: Segmentation fault

Current thread 0x00007f55b910c740 (most recent call first):
File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 1864 in _create_c_op
File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 2027 in init
File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 3616 in create_op
File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/util/deprecation.py", line 507 in new_func
File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/op_def_library.py", line 788 in _apply_op_helper
File "", line 183 in selection_sort
File "/home/user/Desktop/Open3D-PointNet2-Semantic3D/tf_ops/tf_grouping.py", line 40 in select_top_k
File "/home/user/Desktop/Open3D-PointNet2-Semantic3D/tf_ops/tf_grouping.py", line 84 in knn_point
File "test_tf_ops.py", line 23 in test
File "/usr/lib/python3.6/unittest/case.py", line 605 in run
File "/usr/lib/python3.6/unittest/case.py", line 653 in call
File "/usr/lib/python3.6/unittest/suite.py", line 122 in run
File "/usr/lib/python3.6/unittest/suite.py", line 84 in call
File "/usr/lib/python3.6/unittest/suite.py", line 122 in run
File "/usr/lib/python3.6/unittest/suite.py", line 84 in call
File "/usr/lib/python3.6/unittest/runner.py", line 176 in run
File "/usr/local/lib/python3.6/dist-packages/absl/testing/_pretty_print_reporter.py", line 86 in run
File "/usr/lib/python3.6/unittest/main.py", line 256 in runTests
File "/usr/lib/python3.6/unittest/main.py", line 95 in init
File "/usr/local/lib/python3.6/dist-packages/absl/testing/absltest.py", line 2537 in _run_and_get_tests_result
File "/usr/local/lib/python3.6/dist-packages/absl/testing/absltest.py", line 2569 in run_tests
File "/usr/local/lib/python3.6/dist-packages/absl/testing/absltest.py", line 2156 in _run_in_app
File "/usr/local/lib/python3.6/dist-packages/absl/testing/absltest.py", line 2049 in main
File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/platform/googletest.py", line 55 in g_main
File "/usr/local/lib/python3.6/dist-packages/absl/app.py", line 258 in _run_main
File "/usr/local/lib/python3.6/dist-packages/absl/app.py", line 312 in run
File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/platform/app.py", line 40 in run
File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/platform/googletest.py", line 64 in main_wrapper
File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/platform/benchmark.py", line 407 in benchmarks_main
File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/platform/googletest.py", line 65 in main
File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/platform/test.py", line 64 in main
File "test_tf_ops.py", line 137 in
*** Received signal 11 ***
*** BEGIN MANGLED STACK TRACE ***
/usr/local/lib/python3.6/dist-packages/tensorflow/python/../libtensorflow_framework.so.1(+0xfd02db)[0x7f552825b2db]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f55b931b090]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f55b931b00b]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f55b931b090]
/home/user/Desktop/Open3D-PointNet2-Semantic3D/tf_ops/build/libtf_grouping.so(+0x7c18)[0x7f5579227c18]
/home/user/Desktop/Open3D-PointNet2-Semantic3D/tf_ops/build/libtf_grouping.so(ZNSt17_Function_handlerIFN10tensorflow6StatusEPNS0_15shape_inference16InferenceContextEEPS5_E9_M_invokeERKSt9_Any_dataOS4+0x26)[0x7f5579228b56]
/usr/local/lib/python3.6/dist-packages/tensorflow/python/../libtensorflow_framework.so.1(_ZN10tensorflow15shape_inference16InferenceContext3RunERKSt8functionIFNS_6StatusEPS1_EE+0x4d)[0x7f5527f5ed1d]
/usr/local/lib/python3.6/dist-packages/tensorflow/python/_pywrap_tensorflow_internal.so(_ZN10tensorflow12ShapeRefiner10RunShapeFnEPKNS_4NodeEPKNS_18OpRegistrationDataEPNS_24ExtendedInferenceContextE+0x230)[0x7f552f62d720]
/usr/local/lib/python3.6/dist-packages/tensorflow/python/_pywrap_tensorflow_internal.so(_ZN10tensorflow12ShapeRefiner7AddNodeEPKNS_4NodeE+0xcb8)[0x7f552f62f248]
/usr/local/lib/python3.6/dist-packages/tensorflow/python/_pywrap_tensorflow_internal.so(TF_FinishOperation+0x44a)[0x7f552cfe7f1a]
/usr/local/lib/python3.6/dist-packages/tensorflow/python/_pywrap_tensorflow_internal.so(+0x241bdb6)[0x7f552b058db6]
python3.6[0x50e9f5]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50df84]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50fae2]
python3.6(_PyFunction_FastCallDict+0x780)[0x50d970]
python3.6[0x59f271]
python3.6[0x546424]
python3.6(_PyObject_FastCallKeywords+0x4ae)[0x5abf5e]
python3.6[0x50ede5]
python3.6(_PyEval_EvalFrameDefault+0x109c)[0x511fbc]
python3.6[0x593ee2]
python3.6(PyObject_Call+0x43)[0x5ad083]
python3.6(_PyEval_EvalFrameDefault+0x1fb8)[0x512ed8]
python3.6[0x50fae2]
python3.6[0x50e15d]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x109c)[0x511fbc]
python3.6[0x50fae2]
python3.6[0x50e15d]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x109c)[0x511fbc]
python3.6[0x50fae2]
python3.6[0x50e15d]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50df84]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50df84]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50df84]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50fae2]
python3.6(_PyFunction_FastCallDict+0x780)[0x50d970]
python3.6[0x59f271]
python3.6(PyObject_Call+0x43)[0x5ad083]
python3.6(_PyEval_EvalFrameDefault+0x1fb8)[0x512ed8]
python3.6[0x50fae2]
python3.6(_PyFunction_FastCallDict+0x3bd)[0x50d5ad]
python3.6[0x59f271]
python3.6(PyObject_Call+0x43)[0x5ad083]
python3.6[0x5444f3]
python3.6(_PyObject_FastCallKeywords+0x5bc)[0x5ac06c]
python3.6[0x50ede5]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50fae2]
python3.6(_PyFunction_FastCallDict+0x780)[0x50d970]
python3.6[0x59f271]
python3.6(PyObject_Call+0x43)[0x5ad083]
python3.6(_PyEval_EvalFrameDefault+0x1fb8)[0x512ed8]
python3.6[0x50fae2]
python3.6(_PyFunction_FastCallDict+0x3bd)[0x50d5ad]
python3.6[0x59f271]
python3.6(PyObject_Call+0x43)[0x5ad083]
python3.6[0x5444f3]
python3.6(_PyObject_FastCallKeywords+0x5bc)[0x5ac06c]
python3.6[0x50ede5]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50fae2]
python3.6(_PyFunction_FastCallDict+0x780)[0x50d970]
python3.6[0x59f271]
python3.6(PyObject_Call+0x43)[0x5ad083]
python3.6(_PyEval_EvalFrameDefault+0x1fb8)[0x512ed8]
python3.6[0x50fae2]
python3.6(_PyFunction_FastCallDict+0x3bd)[0x50d5ad]
python3.6[0x59f271]
python3.6(PyObject_Call+0x43)[0x5ad083]
python3.6[0x5444f3]
python3.6(_PyObject_FastCallKeywords+0x5bc)[0x5ac06c]
python3.6[0x50ede5]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50df84]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50fae2]
python3.6[0x50e15d]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50df84]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50fae2]
python3.6(_PyFunction_FastCallDict+0x780)[0x50d970]
python3.6[0x59f271]
python3.6[0x546424]
python3.6[0x554a17]
python3.6(PyObject_Call+0x43)[0x5ad083]
python3.6(_PyEval_EvalFrameDefault+0x1fb8)[0x512ed8]
python3.6[0x50df84]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50df84]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50fae2]
python3.6[0x50e15d]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50fae2]
python3.6[0x50e15d]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x109c)[0x511fbc]
python3.6[0x50df84]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50df84]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x1bd)[0x5110dd]
python3.6[0x50fae2]
python3.6[0x50e15d]
python3.6[0x50ecb6]
python3.6(_PyEval_EvalFrameDefault+0x109c)[0x511fbc]
python3.6[0x50fae2]
*** END MANGLED STACK TRACE ***

*** Begin stack trace ***
tensorflow::CurrentStackTrace()

gsignal


std::_Function_handler<tensorflow::Status (tensorflow::shape_inference::InferenceContext*), tensorflow::Status (*)(tensorflow::shape_inference::InferenceContext*)>::_M_invoke(std::_Any_data const&, tensorflow::shape_inference::InferenceContext*&&)
tensorflow::shape_inference::InferenceContext::Run(std::function<tensorflow::Status (tensorflow::shape_inference::InferenceContext*)> const&)
tensorflow::ShapeRefiner::RunShapeFn(tensorflow::Node const*, tensorflow::OpRegistrationData const*, tensorflow::ExtendedInferenceContext*)
tensorflow::ShapeRefiner::AddNode(tensorflow::Node const*)
TF_FinishOperation


_PyEval_EvalFrameDefault


_PyEval_EvalFrameDefault

_PyFunction_FastCallDict


_PyObject_FastCallKeywords

_PyEval_EvalFrameDefault

PyObject_Call
_PyEval_EvalFrameDefault



_PyEval_EvalFrameDefault



_PyEval_EvalFrameDefault



_PyEval_EvalFrameDefault


_PyEval_EvalFrameDefault


_PyEval_EvalFrameDefault


_PyEval_EvalFrameDefault

_PyFunction_FastCallDict

PyObject_Call
_PyEval_EvalFrameDefault

_PyFunction_FastCallDict

PyObject_Call

_PyObject_FastCallKeywords

_PyEval_EvalFrameDefault

_PyFunction_FastCallDict

PyObject_Call
_PyEval_EvalFrameDefault

_PyFunction_FastCallDict

PyObject_Call

_PyObject_FastCallKeywords

_PyEval_EvalFrameDefault

_PyFunction_FastCallDict

PyObject_Call
_PyEval_EvalFrameDefault

_PyFunction_FastCallDict

PyObject_Call

_PyObject_FastCallKeywords

_PyEval_EvalFrameDefault


_PyEval_EvalFrameDefault



_PyEval_EvalFrameDefault


_PyEval_EvalFrameDefault

_PyFunction_FastCallDict



PyObject_Call
_PyEval_EvalFrameDefault


_PyEval_EvalFrameDefault


_PyEval_EvalFrameDefault



_PyEval_EvalFrameDefault



_PyEval_EvalFrameDefault


_PyEval_EvalFrameDefault


_PyEval_EvalFrameDefault



_PyEval_EvalFrameDefault

*** End stack trace ***
Aborted`

I am using the following environment:
Ubuntu Desktop 20.04
python3.6
tensorflow 1.14.0
cuda v10.1
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