-
Notifications
You must be signed in to change notification settings - Fork 3
/
schedule.Rmd
60 lines (31 loc) · 1.79 KB
/
schedule.Rmd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
---
output: html_document
---
## Day 1 "Big data in Biogeography"
- Welcome & Introduction
- Presentation of participants (3 - 5 minutes each, three slides)
- Introductory lecture: Recent developments in big data biogeography
- Literature group work and discussion
- Lecture & Hands on "Biodiversity databases"
- Design of the course projects
- Help with software setup if necessary
## Day 2 "Biogeography through space - Recent biodiversity patterns"
- Lecture “Common biases, caveats and errors in biodiversity databases and tools to address them”
- Hands-on "Recent biodiversity patterns" in R (Obtaining occurrence records, data cleaning, exploring sampling bias)
- Lecture “Novel tools for big data biogeography: bioregionalization, species to area classification, automated conservation assessment”
- Hands-on: "Recent biogeography" (Species richness, taxon-specific bioregionalization, extracting environmental data)
## Day 3 "Historical biogeography - reconstructing ancestral ranges"
- Hands-on "Data preparation"
- Lecture "Historical biogeography – methods to model the evolution of geographic ranges through time"
- Hands-on "Reconstructing ancestral ranges" (`DEC`, `BioGeoBEARS`, `Biogeographic stochastic mapping`, `GeoSSE`)
## Day 4 "Fossil Biogeography"
- Lecture "Trait evolution"
- Hands on "Reconstructing ancestral ranges as continuous trait" (`BITE`)
- Guest lecture by [Sara Varela](https://scholar.google.de/citations?hl=de&user=8dckI70AAAAJ) on Species distribution in paleobiogeography
- Hands on "Reconstructing ancestral ranges as continuous trait" (`BITE`)
## Day 5 "Putting it all together"
- Lecture "Fossil biogeography"
- Optional: Hands-on "Visualizing biogeographic results in R"
- Time for project work
- Student presentations
- Course evaluation and wrap up