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Merge pull request #104 from hubmapconsortium/development
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2.0.0 Release
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jpuerto-psc authored Sep 19, 2024
2 parents 5b492e1 + debe80f commit 6e4c6da
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2 changes: 1 addition & 1 deletion VERSION
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1.8.0
2.0.0
6 changes: 5 additions & 1 deletion src/tags.json
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"salmon": "Spatial data analysed with Salmon",
"codex": "CODEX data",
"slide-seq": "Slide-seq data",
"files": "Work with HuBMAP data files"
"files": "Work with HuBMAP data files",
"hra": "Human Reference Atlas data",
"sc": "Single cell analysis",
"R": "Template written in R",
"zarr": "Using zarr file format"
}
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{
"title": "Blank notebook",
"description": "Notebook only inserting UUIDs of added datasets",
"title": "Blank Notebook",
"description": "Notebook only inserting UUIDs of added datasets.",
"tags": [
],
"is_multi_dataset_template": true,
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{
"title": "Blank Notebook",
"description": "Notebook only inserting UUIDs of added datasets.",
"tags": ["R"],
"is_multi_dataset_template": true,
"template_format": "jinja",
"job_types": ["jupyter_lab_r"],
"examples": [
{
"title": "Workspace Tutorial datasets",
"description": "Create a blank notebook with a CODEX and Slideseq dataset linked.",
"datasets": ["69c70762689b20308bb049ac49653342", "a1d17fdd270a69c813b872a927dfa5f3"]
}
],
"is_hidden": false
}
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from user_templates_api.templates.jupyter_lab.render import JupyterLabRender


class JupyterLabExampleJinjaRender(JupyterLabRender):
def __init__(self):
pass
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[
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# linked datasets\n",
"uuids <- c('{{ uuids|join:'\', \'' }}')"
]
}
]
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{
"title": "Cluster SPRM output of CODEX data and visualize with Vitessce",
"description": "This template shows how to cluster CODEX data and load a new clustering into Vitessce",
"description": "This template shows how to cluster CODEX data and load a new clustering into Vitessce.",
"tags": [
"codex",
"visualization",
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{
"title": "Human Reference Atlas (HRA) API Tutorial",
"description": "This notebook shows users how to instantiate and use the HuBMAP HRA APIs.",
"tags": [
"hra",
"api"
],
"is_multi_dataset_template": true,
"template_format": "jinja",
"is_hidden": false,
"last_modified_unix_timestamp": 1723749414
}
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from user_templates_api.templates.jupyter_lab.render import JupyterLabRender


class JupyterLabExampleJinjaRender(JupyterLabRender):
def __init__(self):
pass
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