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Update Left/Right Ovary Ref Organ to use new Uberon terms #8

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bherr2 opened this issue Aug 26, 2024 · 3 comments
Open

Update Left/Right Ovary Ref Organ to use new Uberon terms #8

bherr2 opened this issue Aug 26, 2024 · 3 comments

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@bherr2
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bherr2 commented Aug 26, 2024

Our ovary ref organs use FMA terms for Left Ovary and Right Ovary. Uberon recently added more resolution to ovary codes, with UBERON:0002119 for left ovary and UBERON:0002118 for right ovary. There might be some issues in switching, but let's look into it.

CC @emquardokus
FYI @AlanSimmons

@emquardokus
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emquardokus commented Oct 29, 2024

@bherr2 updated 3D ref model crosswalk for December 13, 2024 8th HRA release ---will this update in RUI and EUI? We are agnostic to side in ASCT+B tables for all organs with laterality: kidney, ovary, fallopian tube, ureter, lung etc.
Data portal organ page is agnostic to laterality of organ for ovary. https://portal.hubmapconsortium.org/organ/ovary

@AlanSimmons
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Related UBKG change: x-atlas-consortia/ubkg-etl#163

@bherr2
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bherr2 commented Oct 30, 2024

@emquardokus yes, the RUI and EUI will be updated with those. Won't be automatic, but we can make it happen as part of the release in December.

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@AlanSimmons @bherr2 @emquardokus and others