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Multiple entries for cell types: absorptive, adipocyte, & more #1193

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LibbyUX opened this issue Nov 27, 2023 · 1 comment
Open

Multiple entries for cell types: absorptive, adipocyte, & more #1193

LibbyUX opened this issue Nov 27, 2023 · 1 comment
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EUI needs consensus This issue needs consensus before it can be worked on

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@LibbyUX
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LibbyUX commented Nov 27, 2023

Katy requests this data be consolidated to one entry:

image

@bherr2 - I am not assigning projects or milestones, because I'm not sure where to put this, but I wanted to bring it to your attention. Thanks so much! I hope you had a lovely Thanksgiving!

@LibbyUX LibbyUX added the EUI label Nov 27, 2023
@LibbyUX LibbyUX changed the title Two entries for absorptive cell Multiple entries for cell types: absorptive, adipocyte, & more Nov 27, 2023
@bherr2
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bherr2 commented Nov 27, 2023

Hi @katyb ,

If you recall, this issue:

285945473-714f9261-572a-4087-9575-e38830614f55

Is due to in the ASCT+B tables, some cell types were not given a cell ontology id even though it has the same name OR sometimes it has the same pref label, but different cell ontology term + rdfs label. It is ill advised to combine them. We had talked about adding a parenthetical after terms which have a CL id, so that could look like:

  • absorptive (CL:1234) 67
  • absoptive 60
    ...

You will also get results like:

  • adipocyte (CL:4567) 16
  • adipocyte (CL:8900) 159

But there are other possibilities and not a simple fix (its a data issue that probably should not be papered over)

@bherr2 bherr2 added this to the 2024 RUI/EUI Improvements milestone Dec 1, 2023
@bherr2 bherr2 added the needs consensus This issue needs consensus before it can be worked on label Jan 9, 2024
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