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Requesting SPARQL query for HuBMAP IDs for datasets -> samples #1074

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andreasbueckle opened this issue Jul 31, 2023 · 3 comments
Open

Requesting SPARQL query for HuBMAP IDs for datasets -> samples #1074

andreasbueckle opened this issue Jul 31, 2023 · 3 comments
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enhancement New feature or request

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@andreasbueckle
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It would be great for @dw-dot and me to have a SPARQL query on grlc that takes an array of hubmap_id and returns a dict/mapping of <hubmap_id_dataset : hubmap_id_sample. This would avoid us having to do recursive magic to get the rui_location for a data such as: https://github.com/cns-iu/ccf-queries/blob/main/cell_annotations/queries.py#L79-L97
@andreasbueckle andreasbueckle added the enhancement New feature or request label Jul 31, 2023
@bherr2
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bherr2 commented Jul 31, 2023

hubmap_id == uuid or HBMXX.XXX.XXX id?

@andreasbueckle
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We generally track datasets with the HBMXX.XXX.XXX format. However, URLs use the uuid format, So...maybe both?

@andreasbueckle
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@dw-dot Any suggestions for refinement of this request?

@andreasbueckle andreasbueckle changed the title Requestin SPARQL query for HuBMAP IDs for datasets -> samples Requesting SPARQL query for HuBMAP IDs for datasets -> samples Oct 17, 2023
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@andreasbueckle @bherr2