-
Notifications
You must be signed in to change notification settings - Fork 0
/
cwt.py
433 lines (369 loc) · 14 KB
/
cwt.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
import torch
import torch.nn as nn
import numpy as np
from datasave import train_loader, test_loader
from early_stopping import EarlyStopping
from label_smoothing import LSR
from oneD_Meta_ACON import MetaAconC
import time
from torchsummary import summary
from adabn import reset_bn, fix_bn
import visdom
# 四组数据,目前只用了一组(四组都已使用)
time_series_length = 512
GRU_length = 60
# 512 1024 2048 4096 8192 16384
# 60 124 252 508 1020 2044
# 一维数据通过小波变换处理??
# 又怎么绘制tsne和混淆矩阵
def setup_seed(seed):
torch.manual_seed(seed)
torch.cuda.manual_seed_all(seed)
np.random.seed(seed)
torch.backends.cudnn.deterministic = True
#
setup_seed(1)
# class swish(nn.Module):
# def __init__(self):
# super(swish, self).__init__()
#
# def forward(self, x):
# x = x * F.sigmoid(x)
# return x
# def reset_bn(module):
# if issubclass(module.__class__, torch.nn.modules.batchnorm._BatchNorm):
# module.track_running_stats = False
# def fix_bn(module):
# if issubclass(module.__class__, torch.nn.modules.batchnorm._BatchNorm):
# module.track_running_stats = True
# class h_sigmoid(nn.Module):
# def __init__(self, inplace=True):
# super(h_sigmoid, self).__init__()
# self.relu = nn.ReLU6(inplace=inplace)
#
# def forward(self, x):
# return self.relu(x + 3) / 6
#
#
# class h_swish(nn.Module):
# def __init__(self, inplace=True):
# super(h_swish, self).__init__()
# self.sigmoid = h_sigmoid(inplace=inplace)
#
# def forward(self, x):
# return x * self.sigmoid(x)
# import pywt
# import torch
# import numpy as np
# import torch.nn as nn
# # 示例:定义一个CWT变换函数
# def apply_cwt(data, scales, wavelet_name='morl'):
# coefficients = []
# for sample in data:
# coef, _ = pywt.cwt(sample, scales, wavelet_name)
# coefficients.append(coef)
# return np.array(coefficients)
#
#
# # 示例:在数据加载或预处理阶段应用CWT
# # 假设 data 是原始数据
# scales = range(1, 128) # 选择合适的尺度
# transformed_data = apply_cwt(data, scales)
#
# # 将变换后的数据转换为适合PyTorch模型的格式
# transformed_data_tensor = torch.tensor(transformed_data, dtype=torch.float32)
#
#
# # 然后,您可以将这个张量作为输入传递给您的模型
#
# # 注意:您可能需要根据小波变换后的数据形状调整模型结构
class CoordAtt(nn.Module):
def __init__(self, inp, oup, reduction=32):
super(CoordAtt, self).__init__()
# self.pool_w = nn.AdaptiveAvgPool1d(1)
self.pool_w = nn.AdaptiveMaxPool1d(1)
mip = max(6, inp // reduction)
self.conv1 = nn.Conv1d(inp, mip, kernel_size=1, stride=1, padding=0)
self.bn1 = nn.BatchNorm1d(mip, track_running_stats=False)
self.act = MetaAconC(mip)
self.conv_w = nn.Conv1d(mip, oup, kernel_size=1, stride=1, padding=0)
def forward(self, x):
identity = x
n, c, w = x.size()
x_w = self.pool_w(x)
y = torch.cat([identity, x_w], dim=2)
y = self.conv1(y)
y = self.bn1(y)
y = self.act(y)
x_ww, x_c = torch.split(y, [w, 1], dim=2)
a_w = self.conv_w(x_ww)
a_w = a_w.sigmoid()
out = identity * a_w
return out
class Net(nn.Module):
def __init__(self):
super(Net, self).__init__()
self.p1_1 = nn.Sequential(nn.Conv1d(4, 50, kernel_size=18, stride=2),
nn.BatchNorm1d(50),
MetaAconC(50))
self.p1_2 = nn.Sequential(nn.Conv1d(50, 30, kernel_size=10, stride=2),
nn.BatchNorm1d(30),
MetaAconC(30))
self.p1_3 = nn.MaxPool1d(2, 2)
self.p2_1 = nn.Sequential(nn.Conv1d(4, 50, kernel_size=6, stride=1),
nn.BatchNorm1d(50),
MetaAconC(50))
self.p2_2 = nn.Sequential(nn.Conv1d(50, 40, kernel_size=6, stride=1),
nn.BatchNorm1d(40),
MetaAconC(40))
self.p2_3 = nn.MaxPool1d(2, 2)
self.p2_4 = nn.Sequential(nn.Conv1d(40, 30, kernel_size=6, stride=1),
nn.BatchNorm1d(30),
MetaAconC(30))
self.p2_5 = nn.Sequential(nn.Conv1d(30, 30, kernel_size=6, stride=2),
nn.BatchNorm1d(30),
MetaAconC(30))
self.p2_6 = nn.MaxPool1d(2, 2)
self.p3_0 = CoordAtt(30, 30)
# self.p3_1 = nn.Sequential(nn.GRU(124, 64, bidirectional=True)) #
self.p3_1 = nn.Sequential(nn.GRU(GRU_length, 64, bidirectional=True)) #
# self.p3_2 = nn.Sequential(nn.LSTM(128, 512))
self.p3_3 = nn.Sequential(nn.AdaptiveAvgPool1d(1))
self.p4 = nn.Sequential(nn.Linear(30, 28))
def forward(self, x):
p1 = self.p1_3(self.p1_2(self.p1_1(x)))
p2 = self.p2_6(self.p2_5(self.p2_4(self.p2_3(self.p2_2(self.p2_1(x))))))
encode = torch.mul(p1, p2)
# p3 = self.p3_2(self.p3_1(encode))
p3_0 = self.p3_0(encode).permute(1, 0, 2)
p3_2, _ = self.p3_1(p3_0)
# p3_2, _ = self.p3_2(p3_1)
p3_11 = p3_2.permute(1, 0, 2) #
p3_12 = self.p3_3(p3_11).squeeze()
# p3_11 = h1.permute(1,0,2)
# p3 = self.p3(encode)
# p3 = p3.squeeze()
# p4 = self.p4(p3_11) # LSTM(seq_len, batch, input_size)
# p4 = self.p4(encode)
p4 = self.p4(p3_12)
return p4
device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu")
model = Net().to(device)
# model.load_state_dict(torch.load('./data7/B0503_AdamP_AMS_Nb.pt'))
# for m in model.modules():
# if isinstance(m, nn.Conv1d):
# #nn.init.normal_(m.weight)
# #nn.init.xavier_normal_(m.weight)
# nn.init.kaiming_normal_(m.weight)
# #nn.init.constant_(m.bias, 0)
# # elif isinstance(m, nn.GRU):
# # for param in m.parameters():
# # if len(param.shape) >= 2:
# # nn.init.orthogonal_(param.data)
# # else:
# # nn.init.normal_(param.data)
# elif isinstance(m, nn.Linear):
# nn.init.normal_(m.weight, mean=0, std=torch.sqrt(torch.tensor(1/30)))
# input = torch.rand(20, 1, 1024).to(device)
# output = model(input)
# print(output.size())
# with SummaryWriter(log_dir='logs', comment='Net') as w:
# w.add_graph(model, (input,))
# tb = program.TensorBoard()
# tb.configure(argv=[None, '--logdir', 'logs'])
# url = tb.launch()
summary(model, input_size=(4, time_series_length))
# criterion = nn.CrossEntropyLoss()
criterion = LSR()
# criterion = CrossEntropyLoss_LSR(device)
# from adabound import AdaBound
# optimizer = AdaBound(model.parameters(), lr=0.001, weight_decay=0.0001, amsbound=True)
# from EAdam import EAdam
# optimizer = EAdam(model.parameters(), lr=0.001, weight_decay=0.0001, amsgrad=True)
# optimizer = optim.SGD(model.parameters(), lr=0.01, weight_decay=0.0001, momentum=0.9)
# optimizer = optim.Adam(model.parameters(), lr=0.000, weight_decay=0.0001)
bias_list = (param for name, param in model.named_parameters() if name[-4:] == 'bias')
others_list = (param for name, param in model.named_parameters() if name[-4:] != 'bias')
parameters = [{'parameters': bias_list, 'weight_decay': 0},
{'parameters': others_list}]
# optimizer = Nadam(model.parameters())
# optimizer = RAdam(model.parameters())
# from torch_optimizer import AdamP
# from adamp import AdamP
from AdamP_amsgrad import AdamP
optimizer = AdamP(model.parameters(), lr=0.001, weight_decay=0.0001, nesterov=True, amsgrad=True)
# from adabelief_pytorch import AdaBelief
# optimizer = AdaBelief(model.parameters(), lr=0.001, weight_decay=0.0001, weight_decouple=True)
# from ranger_adabelief import RangerAdaBelief
# optimizer = RangerAdaBelief(model.parameters(), lr=0.001, weight_decay=0.0001, weight_decouple=True)
losses = []
acces = []
eval_losses = []
eval_acces = []
early_stopping = EarlyStopping(patience=10, verbose=True)
starttime = time.time()
for epoch in range(150):
train_loss = 0
train_acc = 0
model.train()
for img, label in train_loader:
img = img.float()
img = img.to(device)
# label = (np.argmax(label, axis=1)+1).reshape(-1, 1)
# label=label.float()
label = label.to(device)
label = label.long()
out = model(img)
out = torch.squeeze(out).float()
# label=torch.squeeze(label)
# out_1d = out.reshape(-1)
# label_1d = label.reshape(-1)
# print(out, label)
loss = criterion(out, label)
optimizer.zero_grad()
loss.backward()
optimizer.step()
# print(scheduler.get_lr())
train_loss += loss.item()
_, pred = out.max(1)
num_correct = (pred == label).sum().item()
acc = num_correct / img.shape[0]
train_acc += acc
losses.append(train_loss / len(train_loader))
acces.append(train_acc / len(train_loader))
# 这里是验证集的位置
eval_loss = 0
eval_acc = 0
model.eval()
model.apply(reset_bn)
for img, label in test_loader:
img = img.type(torch.FloatTensor)
img = img.to(device)
label = label.to(device)
label = label.long()
# 新加的,是否可用
# label = label.unsqueeze(1)
# img = img.view(img.size(0), -1)
out = model(img)
out = torch.squeeze(out).float()
# out = out.unsqueeze(1)
# print(out, '\n\n', label)
loss = criterion(out, label).sum(dim=-1).mean()
#
eval_loss += loss.item()
#
_, pred = out.max(1)
# print(pred, "pred")
num_correct = (pred == label).sum().item()
# print((pred == label).sum())
# print(pred, '\n\n', label)
acc = num_correct / img.shape[0]
# print(num_correct, img.shape)
eval_acc += acc
eval_losses.append(eval_loss / len(test_loader))
eval_acces.append(eval_acc / len(test_loader))
print('epoch: {}, Train Loss: {:.4f}, Train Acc: {:.4f}, Test Loss: {:.4f}, Test Acc: {:.4f}'
.format(epoch, train_loss / len(train_loader), train_acc / len(train_loader),
eval_loss / len(test_loader), eval_acc / len(test_loader)))
# 使用visdom对损失和准确率进行可视化
vis = visdom.Visdom()
vis.line(Y=np.array(losses), X=np.array(range(len(losses))), win='train_loss', opts={'title': 'train_loss'})
vis.line(Y=np.array(acces), X=np.array(range(len(acces))), win='train_acc', opts={'title': 'train_acc'})
vis.line(Y=np.array(eval_losses), X=np.array(range(len(eval_losses))), win='test_loss',
opts={'title': 'test_loss'})
vis.line(Y=np.array(eval_acces), X=np.array(range(len(eval_acces))), win='test_acc', opts={'title': 'test_acc'})
early_stopping(eval_loss / len(test_loader), model)
model.apply(fix_bn)
if early_stopping.early_stop:
print("Early stopping")
break
endtime = time.time()
dtime = endtime - starttime
print("time:%.8s s" % dtime)
torch.save(model.state_dict(), '\B0503_LSTM.pt')
import pandas as pd
pd.set_option('display.max_columns', None) #
pd.set_option('display.max_rows', None) #
# add confusion matrix calculation
from sklearn.metrics import confusion_matrix
import numpy as np
# Get predictions on test set
model.eval()
Y_test = []
y_pred = []
with torch.no_grad():
for X_test, y_test in test_loader:
X_test = X_test.to(device)
y_test = y_test.to(device)
y_test_pred = model(X_test.float())
# print(y_test_pred)
y_pred.extend(y_test_pred.argmax(1).cpu().numpy())
y_test = y_test.cpu().numpy()
Y_test.extend(y_test)
# Calculate confusion matrix
# print(Y_test, y_pred)
conf_mat = confusion_matrix(Y_test, y_pred)
# print(conf_mat)
conf_mat_norm = conf_mat.astype('float') / conf_mat.sum(axis=1)[:, np.newaxis]
conf_mat_norm = np.around(conf_mat_norm, decimals=2)
# 将其转换为DataFrame
conf_df = pd.DataFrame(conf_mat_norm, columns=range(28), index=range(28))
# 保存到excel
conf_df.to_excel("confusion_matrix.xlsx")
# visualize the confusion matrix
import matplotlib.pyplot as plt
plt.imshow(conf_mat_norm, interpolation='nearest')
plt.title('Confusion matrix')
plt.colorbar()
plt.xticks(np.arange(28))
plt.yticks(np.arange(28))
plt.show()
# t-SNE可视化的代码,用于将高维数据投影到2D空间进行可视化
from sklearn.manifold import TSNE
import matplotlib.pyplot as plt
# 将输出结果和标签取出
outputs = []
labels = []
with torch.no_grad():
for data, label in test_loader:
data = data.to(device)
outputs.append(model(data.float()))
labels.append(label)
outputs = torch.cat(outputs, dim=0).cpu().numpy()
labels = torch.cat(labels, dim=0).cpu().numpy()
# # 进行t-SNE降维
# tsne = TSNE(n_components=2, learning_rate=100).fit_transform(outputs)
#
# tsne_df = pd.DataFrame(tsne, columns=["x", "y"])
# tsne_df["label"] = labels
#
# tsne_df.to_excel("tsne.xlsx")
#
# # 可视化
# plt.figure(figsize=(5, 5))
# plt.xticks([])
# plt.yticks([])
#
# plt.scatter(tsne[:, 0], tsne[:, 1], c=labels, cmap='viridis')
# plt.colorbar() # 添加颜色条,显示映射关系
#
# plt.savefig('tsne.png')
# plt.show()
from sklearn.manifold import TSNE
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D # 导入3D绘图工具包
import pandas as pd
# 你之前的代码部分保持不变
# 进行t-SNE降维
tsne = TSNE(n_components=3, learning_rate=100).fit_transform(outputs) # 改为3维
tsne_df = pd.DataFrame(tsne, columns=["x", "y", "z"]) # 添加第三个维度
tsne_df["label"] = labels
tsne_df.to_excel("tsne_3d.xlsx")
# 可视化
fig = plt.figure(figsize=(8, 8))
ax = fig.add_subplot(111, projection='3d') # 设置为3D图
# 绘制散点图
sc = ax.scatter(tsne_df['x'], tsne_df['y'], tsne_df['z'], c=labels, cmap='viridis')
plt.colorbar(sc) # 添加颜色条
plt.savefig('tsne_3d.png')
plt.show()