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Ginkgo Data

This repository contains performance data for the Ginkgo library. The performance data hosted in this repository is regularly updated to reflect the latest version of the library via the CI system. To interactively generate different visualizations of the data collected here, check out Ginkgo Performance Explorer.

Repository structure and metadata

This repository contains two types of information:

  1. Benchmark data of the Ginkgo library on different hardware in the data folder;
  2. Plot scripts for the GPE in the plots folder.

For most use cases, only benchmark data (1) are relevant.

Repository structure

In the data/ folder, you can find the actual benchmark data listed. The data is organized in a hierarchy of folders, with the following levels:

  1. The hardware that is benchmarked, e.g. MI100
  2. The Ginkgo executor controlling that hardware, e.g. hip
  3. The type of data used by the benchmark, e.g. SuiteSparse for matrices from the SuiteSparse Collection, or blas.json for synthetic Dense Linear Algebra benchmarks.
  4. In some cases, extra levels are provided as data classification. For SuiteSparse, the matrices are put into different directories based on the collection they belong to.
  5. The final benchmark data is always in standalone benchmark files.

Note that aggregated benchmark data can be present in the root data folder, but they are only convenience files for the Ginkgo Performance Explorer and are not always up to date. Scripts are provided also in the main data folder to aggregate the standalone SuiteSparse JSON files.

Most of the data can be found in the master branch. Data can also be found in other branches, either because the data was uploaded for debugging purposes, or in the context of a scientific paper.

Commits and data sources

The data can be added by:

  1. The @ginkgo-bot account;
  2. Any users who want to share their Ginkgo data benchmarks.

In the first case, the commit message will contain some benchmark metadata, usually in the form: Benchmark on with of

[TODO]: Benchmark metadata file

For future benchmarks posted by the @ginkgo-bot account, a metadata file will be added to provide extra information on the benchmark, such as the benchmark configuration and the benchmarking environment.

Benchmark data format

The benchmark data format and sometimes the data structure will change depending on the benchmark type. They are usually defined by the BENCHMARK variable of the run_all_benchmarks.sh script. Ginkgo benchmarking is explained in detail in the BENCHMARKING.md file. In this section, we focus on the format of the specific JSON files.

The type can be (not necessarily up to date):

  • spmv: benchmark sparse matrix-vector product. This produces a SuiteSparse type of benchmark data.
  • solver: benchmark solvers, includes SpMV data and can include multiple preconditioners. This produces a SuiteSparse type of benchmark data.
  • preconditioner: synthetic preconditioner-only benchmarks, like for the Block-Jacobi preconditioner. This produces a preconditioner-specific type of data.
  • conversions: benchmark conversions between matrix formats. This produces a SuiteSparse type of benchmark data.
  • blas: benchmark Ginkgo dense BLAS functionality, like dot products, etc. This produces an array of data points for different synthetic sizes.
  • sparse_blas: a benchmark of Ginkgo Sparse BLAS functionality, like SpGEMM.

SuiteSparse data format

Since it is the most common data type, we mostly describe the SuiteSparse type of benchmark data. The other benchmark data types are usually similar but simpler.

For SuiteSparse data type, every matrix is in a different .json file. They can easily be put together into a large array of data points. For each matrix, the following data are always available:

  • filename: the full path to the matrix file that was benchmarked
  • problem: information about the matrix itself, like its unique SuiteSparse id, the name of the matrix, the group it is part of, etc, but also simple statistics about the row and column distribution of the nonzero elements in row_distribution and col_distribution.

The following data are benchmark dependent:

  • spmv: contains a list of data named after the benchmarked SpMV format. The memory consumption is available in storage, completed is true if the SpMV format could be run successfully (e.g., did not run out of memory), and time contains the time for each repetition.
    • the optimal SpMV format is also set as the fastest SpMV format
  • conversions: contains a list of data points each name in the form source-destination matrix formats. It contains completed, repetitions and time similarly to the SpMV benchmark.
  • solver: each solver data is provided under its solver name. If the solver is preconditioned, the preconditioner will be listed in the name.
    • recurrent, true and implicit residual norms can be provided if a detailed benchmark was run (more time-consuming).
    • Also for a detailed run, iteration_timestamps are also listed in a corresponding array.
    • The two main subparts of the solver data are the generate which lists the amount of time taken to generate the solver from its factory, and the apply which tries to solve the problem with a specific Right Hand Side (RHS). The norm of the RHS is given in rhs_norm.
    • In apply, the number of iterations taken for solving and the time are always provided.
    • For both generate and apply in the case of a detailed run, the time taken for every solver sub-component (kernel, copies, etc) is given under components.
    • The repetitions and completed are the same as for the SpMV benchmark.

Licensing

The Ginkgo benchmark data is available under the CC-BY license. All contributions to the project are added under this license. By pushing to this repository, you agree to provide your data under the CC-BY license.