[Bank configuration] Workflow update does not allow to restart new updated workflow

[horkko]

Hi, me again 😄

I've noticed something new which is quite annoying.
I've set a bank configuration with following blocks:

BLOCKS=B1,B2
B1=P1
B2=P2
P1=echo
P2=echo2

I start the update, everything goes well, the bank update succeeds with release 1.0.
Now I update the configuration file and add a new BLOCK as follow:

BLOCKS=B1,B2,B3
B1=P1
B2=P2
B3=P3
P1=echo
P2=echo2
P3=index

I want know to integrate the new block (index generation for example) for the current release 1.0 then I run:
biomaj-cli.py --update --bank foobar --from-task postprocess --process B3 --release 1.0
and I cannot update my bank:

2017-04-06 11:38:23,842 INFO  [root][MainThread] [bank.py:update:1054] Bank:foobar:Release:1.0
2017-04-06 11:38:23,843 INFO  [root][MainThread] [bank.py:update:1085] Process B3 not found in postprocess
2017-04-06 11:38:23,843 INFO  [root][MainThread] [notify.py:notifyBankAction:29] Notify:[email protected]
2017-04-06 11:38:23,847 INFO  [root][MainThread] [notify.py:notifyBankAction:45] BANK[foobar] - STATUS[True] - UPDATE[True] - REMOVE[False] - RELEASE[1.0]

Is there a way to workaround this issue?
Thanks

Emmanuel

[osallou]

nope ;-) I have to check, but for a restart, I think we do not "reload" the process workflow, we only take existing one. So we need to rebuild the process workflow on each update, and check current status. The problem is if workflow is really different (dependencies) and how to match it with current status. Le jeu. 6 avr. 2017 à 14:22, Emmanuel Quevillon <[email protected]> a écrit :

…

Hi, me again 😄 I've noticed something new which is quite annoying. I've set a bank configuration with following blocks: BLOCKS=B1,B2 B1=P1 B2=P2 P1=echo P2=echo2 I start the update, everything goes well, the bank update succeeds with release 1.0. Now I update the configuration file and add a new BLOCK as follow: BLOCKS=B1,B2,B3 B1=P1 B2=P2 B3=P3 P1=echo P2=echo2 P3=index I want know to integrate the new block (index generation for example) for the current release 1.0 then I run: biomaj-cli.py --update --bank foobar --from-task postprocess --process B3 --release 1.0 and I cannot update my bank: 2017-04-06 11:38:23,842 INFO [root][MainThread] [bank.py:update:1054] Bank:foobar:Release:1.0 2017-04-06 11:38:23,843 INFO [root][MainThread] [bank.py:update:1085] Process B3 not found in postprocess 2017-04-06 11:38:23,843 INFO [root][MainThread] [notify.py:notifyBankAction:29] ***@***.*** 2017-04-06 11:38:23,847 INFO [root][MainThread] [notify.py:notifyBankAction:45] BANK[foobar] - STATUS[True] - UPDATE[True] - REMOVE[False] - RELEASE[1.0] Is there a way to workaround this issue? Thanks Emmanuel — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#83>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AA-gYtvEWP10ezASZMue4_z_NlyQ6eGoks5rtNkEgaJpZM4M1hbe> .