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About

PyPI version

Microservice to manage biomaj, acts as a frontend to receive biomaj-cli commands and execute operations

Needs mongo and redis

Development

flake8 --ignore E501 biomaj_daemon

Run

Message consumer:

export BIOMAJ_CONFIG=path_to_config.yml
python bin/biomaj_daemon_consumer.py

Web server

If package is installed via pip, you need a file named gunicorn_conf.py containing somehwhere on local server:

def worker_exit(server, worker):
    from prometheus_client import multiprocess
    multiprocess.mark_process_dead(worker.pid)

If you cloned the repository and installed it via python setup.py install, just refer to the gunicorn_conf.py in the cloned repository.

export BIOMAJ_CONFIG=path_to_config.yml
rm -rf ..path_to/prometheus-multiproc
mkdir -p ..path_to/prometheus-multiproc
export prometheus_multiproc_dir=..path_to/prometheus-multiproc
gunicorn -c ../path_to/gunicorn_conf.py biomaj_daemon.daemon.biomaj_daemon_web:app

Web processes should be behind a proxy/load balancer, API base url /api/daemon

API

For authentication, add api key to HTTP header X-API-KEY

For admin only, operations, add to config.yml

general:
  admin:
    - admin_user_id

TO use API, some operations are limited to