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Macsyfinder models

Repository containing up-to-date definitions and models for the detection of macromolecular systems with MacSyFinder.

This repository aims at gathering in the same place the different models built for MacSyFinder.

To download the entire repository, click on the green button (top right corner of this readme) with "Clone or download" written on it. If you want to download a specific module, go to the specific page of the module, and a link will be provided there.

Conjugation (CONJScan)

Conjugation is a mechanism allowing transfer of DNA between bacteria.

  • Link to models: Conjugation

  • Webserver version: Galaxy

  • References:

    • Abby Sophie S., Néron Bertrand, Ménager Hervé, Touchon Marie, Rocha Eduardo P. C. (2014). MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems. In PLoS ONE, 9 (10), pp. e110726. doi:10.1371/journal.pone.0110726

    • Abby Sophie S., Cury Jean, Guglielmini Julien, Néron Bertrand, Touchon Marie, Rocha Eduardo P. C. (2016). Identification of protein secretion systems in bacterial genomes. In Scientific Reports, 6, pp. 23080. doi:10.1038/srep23080

Secretion Systems (TXSScan)

detection of protein secretion systems and related appendages

  • Link to models: Secretion Systems

  • Webserver version: Galaxy

  • References:

    • Abby Sophie S., Néron Bertrand, Ménager Hervé, Touchon Marie, Rocha Eduardo P. C. (2014). MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems. In PLoS ONE, 9 (10), pp. e110726. doi:10.1371/journal.pone.0110726

    • Abby Sophie S., Cury Jean, Guglielmini Julien, Néron Bertrand, Touchon Marie, Rocha Eduardo P. C. (2016). Identification of protein secretion systems in bacterial genomes. In Scientific Reports, 6, pp. 23080. doi:10.1038/srep23080