From 00b51b13362f5779b9a5eaf656e09e85720ff731 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 11 Sep 2023 01:55:10 +0000
Subject: [PATCH 1/3] ci(dependabot): bump actions/checkout from 3 to 4

Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 .github/workflows/ci.yaml           | 4 ++--
 .github/workflows/deploy.yaml       | 2 +-
 .github/workflows/publish-docs.yaml | 2 +-
 3 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
index 072fd42..7fdeeef 100644
--- a/.github/workflows/ci.yaml
+++ b/.github/workflows/ci.yaml
@@ -13,7 +13,7 @@ jobs:
     name: Lint
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Run pre-commit linting
         run: pipx run pre-commit run --all-files
 
@@ -33,7 +33,7 @@ jobs:
             python-version: "3.10"
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: conda-incubator/setup-miniconda@v2
         with:
diff --git a/.github/workflows/deploy.yaml b/.github/workflows/deploy.yaml
index b1da70c..ada751c 100644
--- a/.github/workflows/deploy.yaml
+++ b/.github/workflows/deploy.yaml
@@ -10,7 +10,7 @@ jobs:
     name: Build and publish Python 🐍 distributions 📦 to PyPI
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - uses: actions/setup-python@v4
         with:
           python-version: "3.x"
diff --git a/.github/workflows/publish-docs.yaml b/.github/workflows/publish-docs.yaml
index c41c99c..e18f3b7 100644
--- a/.github/workflows/publish-docs.yaml
+++ b/.github/workflows/publish-docs.yaml
@@ -21,7 +21,7 @@ jobs:
         shell: bash -l {0}
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - uses: conda-incubator/setup-miniconda@v2
         with:

From deecdcafb3fb584047d449e128fccf1608a6fdc3 Mon Sep 17 00:00:00 2001
From: Talley Lambert <talley.lambert@gmail.com>
Date: Thu, 2 Nov 2023 11:52:56 -0400
Subject: [PATCH 2/3] Update conda setup in CI and publish-docs workflows

---
 .github/workflows/ci.yaml           | 3 ++-
 .github/workflows/publish-docs.yaml | 3 ++-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
index 7fdeeef..a7736b8 100644
--- a/.github/workflows/ci.yaml
+++ b/.github/workflows/ci.yaml
@@ -38,7 +38,8 @@ jobs:
       - uses: conda-incubator/setup-miniconda@v2
         with:
           python-version: ${{ matrix.python-version }}
-          mamba-version: "*"
+          miniforge-version: latest
+          use-mamba: true
           channels: conda-forge
           channel-priority: true
 
diff --git a/.github/workflows/publish-docs.yaml b/.github/workflows/publish-docs.yaml
index e18f3b7..62e17ee 100644
--- a/.github/workflows/publish-docs.yaml
+++ b/.github/workflows/publish-docs.yaml
@@ -26,7 +26,8 @@ jobs:
       - uses: conda-incubator/setup-miniconda@v2
         with:
           python-version: "3.11"
-          mamba-version: "*"
+          miniforge-version: latest
+          use-mamba: true
           channels: conda-forge
           channel-priority: true
 

From b328d9c5acbf729cdbc85b552074f6197fa01ef4 Mon Sep 17 00:00:00 2001
From: Talley Lambert <talley.lambert@gmail.com>
Date: Thu, 2 Nov 2023 11:59:47 -0400
Subject: [PATCH 3/3] add ipykernel to docs deps

---
 pyproject.toml | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 1793742..84c47ef 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -23,12 +23,13 @@ dependencies = ['networkx', 'ilpy>=0.3.1', 'numpy', 'structsvm']
 dev = ["pre-commit", "pytest", "pytest-cov", "ruff", "twine", "build"]
 test = ["pytest", "pytest-cov", "plotly"]
 docs = [
-    "sphinx",
+    "ipykernel",
+    "jupyter_sphinx",
+    "plotly",
     "sphinx_rtd_theme",
     "sphinx_togglebutton",
+    "sphinx",
     "tomli",
-    "jupyter_sphinx",
-    "plotly",
 ]
 
 [project.urls]