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Detecting Copy number neutral LOH #40

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ashpsnair opened this issue Nov 28, 2024 · 0 comments
Open

Detecting Copy number neutral LOH #40

ashpsnair opened this issue Nov 28, 2024 · 0 comments

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@ashpsnair
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Hi !
I have long read WGS data (20X depth- Nanopore) and wanted to look at the large deletions. I already know that my sample has a large deletion: chr13 p loss (detected from short read data).
However, when i ran Spectre I could not detect it, Could it be because it is copy number neutral?

Also, I have attached plot for chromosome 14, Is there a large deletion here?
p3l_plot_cnv_chr14

Thanks for your help!

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