From dfa586d7d588be8d63733b2c81f2259064d6fa69 Mon Sep 17 00:00:00 2001
From: Philippe Sanio <psanio10@gmail.com>
Date: Mon, 18 Mar 2024 23:05:52 +0100
Subject: [PATCH] Update: Spectre release workflow for Spectre 0.2.0

---
 .github/workflows/release.yaml | 48 ++++++++++++++++++++++++++++++++++
 setup.py                       | 12 +++++----
 2 files changed, 55 insertions(+), 5 deletions(-)
 create mode 100644 .github/workflows/release.yaml

diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml
new file mode 100644
index 0000000..e2a8ae3
--- /dev/null
+++ b/.github/workflows/release.yaml
@@ -0,0 +1,48 @@
+name: Publish Python distribution to PyPI and TestPyPI
+on: push
+jobs:
+  build:
+    name: Build distribution 📦
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: "3.10"
+    - name: Install pypa/build
+      run: >-
+        python3 -m
+        pip install
+        build
+        --user
+    - name: Build a binary wheel and a source tarball
+      run: python3 -m build
+    - name: Store the distribution packages
+      uses: actions/upload-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+
+  publish-to-pypi:
+    name: >-
+      Publish Python distribution to PyPI
+    if: startsWith(github.ref, 'refs/tags/')  # only publish to PyPI on tag pushes
+    needs:
+    - build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/spectre-cnv # Replace <package-name> with your PyPI project name
+    permissions:
+      id-token: write  # IMPORTANT: mandatory for trusted publishing
+
+    steps:
+    - name: Download all the dists
+      uses: actions/download-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+    - name: Publish distribution 📦 to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1
diff --git a/setup.py b/setup.py
index 29da515..6cf929d 100644
--- a/setup.py
+++ b/setup.py
@@ -1,12 +1,14 @@
 from setuptools import setup, find_packages
 
 setup(
-    name='Spectre',
+    name='spectre',
     version='0.2.0',
     packages=find_packages(),
-    url='',
-    license='',
+    url='https://github.com/fritzsedlazeck/Spectre',
+    license='MIT',
     author='Philippe Sanio',
-    author_email='',
-    description=''
+    author_email='philippe.sanio@gmail.com',
+    description='Long read copy number variation (CNV) caller',
+    long_description=open('README.md').read(),
+    long_description_content_type='text/markdown',
 )