diff --git a/docs/conf.py b/docs/conf.py index 10d28103..b6c091b8 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -40,8 +40,8 @@ master_doc = "index" # General information about the project. -project = "sample" -copyright = "2012, Kenneth Reitz" +project = "ModelSEEDpy" +copyright = "2023, Henry Lab" # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the @@ -181,7 +181,7 @@ # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, author, documentclass [howto/manual]). latex_documents = [ - ("index", "sample.tex", "sample Documentation", "Kenneth Reitz", "manual"), + # ("index", "sample.tex", "sample Documentation", "Kenneth Reitz", "manual"), ] # The name of an image file (relative to this directory) to place at the top of @@ -209,7 +209,9 @@ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). -man_pages = [("index", "sample", "sample Documentation", ["Kenneth Reitz"], 1)] +man_pages = [ +# ("index", "sample", "sample Documentation", ["Kenneth Reitz"], 1) +] # If true, show URL addresses after external links. # man_show_urls = False @@ -221,15 +223,15 @@ # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ - ( - "index", - "sample", - "sample Documentation", - "Kenneth Reitz", - "sample", - "One line description of project.", - "Miscellaneous", - ), + # ( + # "index", + # "sample", + # "sample Documentation", + # "Kenneth Reitz", + # "sample", + # "One line description of project.", + # "Miscellaneous", + # ), ] # Documents to append as an appendix to all manuals. diff --git a/docs/source/community/mssmetana_api.rst b/docs/source/community/mssmetana_api.rst index 03260d57..f5ca9ef2 100644 --- a/docs/source/community/mssmetana_api.rst +++ b/docs/source/community/mssmetana_api.rst @@ -143,14 +143,14 @@ All of the defined scores can be simulated on the initalized community system th -------------------------- -kbase_output() +report_generation() -------------------------- The scores can be calculated over a large range of models, either for specified pairs or for all combinations of all models. This process can be expedited with optional parallelization. This function is a **Staticmethod**, and therefore cannot access any content that is loaded in the class object of the aforementioned functions. .. code-block:: python - scores_df, mets = mssmet.kbase_output(all_models:iter=None, pairs:dict=None, mem_media:dict=None, + scores_df, mets = mssmet.report_generation(all_models:iter=None, pairs:dict=None, mem_media:dict=None, pair_limit:int=None, exclude_pairs:list=None, kbase_obj=None, RAST_genomes:dict=None, see_media:bool=True, environment:Union[dict]=None, # can be KBase media object diff --git a/examples/Community Modeling/smetana/10-member_pairs_dev.ipynb b/examples/Community Modeling/smetana/10-member_pairs_dev.ipynb index 9f3956b6..711640f1 100644 --- a/examples/Community Modeling/smetana/10-member_pairs_dev.ipynb +++ b/examples/Community Modeling/smetana/10-member_pairs_dev.ipynb @@ -8092,7 +8092,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.6" + "version": "3.9.12" } }, "nbformat": 4, diff --git a/examples/Community Modeling/smetana/Vorholt_replication.ipynb b/examples/Community Modeling/smetana/Vorholt_replication.ipynb index c7ae17d5..b6a7d4d7 100644 --- a/examples/Community Modeling/smetana/Vorholt_replication.ipynb +++ b/examples/Community Modeling/smetana/Vorholt_replication.ipynb @@ -2,66 +2,23 @@ "cells": [ { "cell_type": "code", - "execution_count": 1, - "id": "ea3ed9e3-db56-4543-b29e-a342e40b5a05", - "metadata": {}, + "execution_count": 5, + "id": "59171874-3218-45aa-a91d-0c480367c702", + "metadata": { + "tags": [] + }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "L233 L202 L15 L34 L179 L257 L145 SynCom7\n", - "L202 L304 L154 L164 L145 L8\n", - "{'L233', 'L202', 'L15', 'L304', 'L34', 'L154', 'L179', 'L164', 'L257', 'L145', 'SynCom7', 'L8'}\n" + "SynCom7 L257 L179 L15 L233 L145 L34 L202\n", + "L154 L8 L304 L145 L202 L164\n", + "{'L154', 'SynCom7', 'L257', 'L179', 'L15', 'L8', 'L233', 'L304', 'L145', 'L34', 'L202', 'L164'}\n" ] } ], "source": [ - "base_media = {\n", - " \"cpd00063\": 1000,\n", - " \"cpd00099\": 1000,\n", - " \"cpd00149\": 1000,\n", - " \"cpd00058\": 1000,\n", - " \"cpd10515\": 1000,\n", - " \"cpd10516\": 1000,\n", - " \"cpd00001\": 1000,\n", - " \"cpd00205\": 1000,\n", - " \"cpd00254\": 1000,\n", - " \"cpd00030\": 1000,\n", - " \"cpd11574\": 1000,\n", - " \"cpd00971\": 1000,\n", - " \"cpd00013\": 1000,\n", - " \"cpd00244\": 1000,\n", - " \"cpd00007\": 1000,\n", - " \"cpd00009\": 1000,\n", - " \"cpd00048\": 1000,\n", - " \"cpd00034\": 1000,\n", - " \"cpd00305\": 1000,\n", - " \"cpd00104\": 1000,\n", - " \"cpd00220\": 1000,\n", - " \"cpd00215\": 1000,\n", - " \"cpd00635\": 1000,\n", - " \"cpd00541\": 1000,\n", - " \"cpd00393\": 1000,\n", - " \"cpd00644\": 1000,\n", - " \"cpd00218\": 1000,\n", - " \"cpd00443\": 1000,\n", - "}\n", - "\n", - "variable_Cs = [\"cpd00027\", \"cpd00108\", \"cpd00082\", \"cpd00138\", \"cpd00314\", \"cpd00076\", \"cpd00154\", \"cpd00224\", \"cpd00121\", \"cpd00158\", \"cpd00794\", \"cpd00179\", \"cpd00029\", \"cpd00180\", \"cpd00047\", \"cpd00036\", \"cpd00222\",\n", - " \"cpd00020\", \"cpd00280\", \"cpd00035\", \"cpd00051\", \"cpd00132\", \"cpd00041\", \"cpd00084\", \"cpd00023\", \"cpd00053\", \"cpd00033\", \"cpd00119\", \"cpd00322\", \"cpd00107\", \"cpd00039\", \"cpd00060\", \"cpd00129\", \"cpd00054\",\n", - " \"cpd00161\", \"cpd00156\", \"cpd00064\", \"cpd00065\", \"cpd00069\", \"cpd00066\", \"cpd00116\", \"cpd00100\", \"cpd00458\", \"cpd00153\", \"cpd00187\"]\n", - "\n", - "\n", - "def media_variations(base_media, variable_cpds):\n", - " media = []\n", - " for variation in variable_cpds:\n", - " base = base_media.copy()\n", - " base.update({variation: 1000})\n", - " media.append(base)\n", - " print(media)\n", - " return media\n", - "\n", "from pandas import read_excel\n", "from itertools import chain\n", "\n", @@ -81,7 +38,17 @@ "\n", "\n", "all_examined_models = exp1_organisms.union(exp2_organisms)\n", - "print(all_examined_models)" + "print(all_examined_models)\n", + "\n", + "# L202 and L145 are not present in Ranjan's phylosphere Narrative" + ] + }, + { + "cell_type": "markdown", + "id": "fd7d87ef-bbf0-4cbf-86ee-91a0348043a8", + "metadata": {}, + "source": [ + "# Use their curated models" ] }, { @@ -20223,100 +20190,16295 @@ "df, mets = MSCommScores.kbase_output(models, environments=media_variations(base_media, variable_Cs), skip_bad_media=True) #, pool_size=cpu_count()/2)[0])\n", "display(df)\n", "\n", + "# TODO identify the biomass reaction and other nuances of these curated models to permit their simulation through our methods\n", + "\n", "%run ../../../modelseedpy/core/report.py\n", "report = commscores_report(df, mets)\n", "(models)" ] }, { - "cell_type": "code", - "execution_count": 5, - "id": "321d5cd6-bf74-4109-8962-f0e936a4bf0b", + "cell_type": "markdown", + "id": "b992c892-7e25-4f1c-8730-b594561bbc28", "metadata": {}, + "source": [ + "# Use the KBase reconstructed models" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "e5d202a9-f776-465d-9aac-c1c4f7c6e35b", + "metadata": { + "collapsed": true, + "jupyter": { + "outputs_hidden": true + }, + "tags": [] + }, "outputs": [ { - "data": { - "text/html": [ - "
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testtest2
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" - ], - "text/plain": [ - " test test2\n", - "0 1.000 2.000\n", - "1 2.123 3.000\n", - "2 3.000 4.123" - ] - }, - "execution_count": 5, - "metadata": {}, - "output_type": "execute_result" + "name": "stdout", + "output_type": "stream", + "text": [ + "{'GCF_001421165.1', 'GCF_001426165.1', 'GCF_001423105.1', 'GCF_001423665.1', 'GCF_001422185.1', 'GCF_001423785.1', 'GCF_001421425.1', 'GCF_001424595.1', 'GCF_001421805.1'}\n" + ] } ], "source": [ - "from pandas import DataFrame\n", + "leaf_to_genbank = {'Leaf5': 'GCF_001421155.1', 'Leaf8': 'GCF_001421165.1', 'Leaf10': 'GCF_001421245.1', 'Leaf203': 'GCF_001421275.1', 'Leaf11': 'GCF_001421285.1', 'Leaf1': 'GCF_001421315.1', 'Leaf2': 'GCF_001421325.1', \n", + " 'Leaf9': 'GCF_001421355.1', 'Leaf16': 'GCF_001421405.1', 'Leaf208': 'GCF_001421415.1', 'Leaf15': 'GCF_001421425.1', 'Leaf201': 'GCF_001421435.1', 'Leaf210': 'GCF_001421485.1', 'Leaf17': 'GCF_001421505.1', \n", + " 'Leaf216': 'GCF_001421515.1', 'Leaf20': 'GCF_001421535.1', 'Leaf222': 'GCF_001421565.1', 'Leaf23': 'GCF_001421585.1', 'Leaf24': 'GCF_001421605.1', 'Leaf226': 'GCF_001421625.1', 'Leaf25': 'GCF_001421635.1', \n", + " 'Leaf26': 'GCF_001421665.1', 'Leaf28': 'GCF_001421685.1', 'Leaf220': 'GCF_001421705.1', 'Leaf22': 'GCF_001421715.1', 'Leaf230': 'GCF_001421745.1', 'Leaf32': 'GCF_001421765.1', 'Leaf33': 'GCF_001421785.1', \n", + " 'Leaf34': 'GCF_001421805.1', 'Leaf38': 'GCF_001421825.1', 'Leaf42': 'GCF_001421845.1', 'Leaf44': 'GCF_001421865.1', 'Leaf48': 'GCF_001421885.1', 'Leaf61': 'GCF_001421905.1', 'Leaf62': 'GCF_001421915.1', \n", + " 'Leaf64': 'GCF_001421945.1', 'Leaf67': 'GCF_001421965.1', 'Leaf231': 'GCF_001421995.1', 'Leaf70': 'GCF_001422025.1', 'Leaf242': 'GCF_001422045.1', 'Leaf76': 'GCF_001422065.1', 'Leaf83': 'GCF_001422075.1', \n", + " 'Leaf84': 'GCF_001422105.1', 'Leaf85': 'GCF_001422125.1', 'Leaf254': 'GCF_001422145.1', 'Leaf86': 'GCF_001422165.1', 'Leaf257': 'GCF_001422185.1', 'Leaf261': 'GCF_001422205.1', 'Leaf89': 'GCF_001422215.1', \n", + " 'Leaf262': 'GCF_001422245.1', 'Leaf263': 'GCF_001422285.1', 'Leaf264': 'GCF_001422325.1', 'Leaf93': 'GCF_001422345.1', 'Leaf265': 'GCF_001422365.1', 'Leaf99': 'GCF_001422375.1', 'Leaf267': 'GCF_001422405.1', \n", + " 'Leaf102': 'GCF_001422425.1', 'Leaf274': 'GCF_001422445.1', 'Leaf280': 'GCF_001422455.1', 'Leaf283': 'GCF_001422485.1', 'Leaf29': 'GCF_001422495.1', 'Leaf30': 'GCF_001422525.1', 'Leaf41': 'GCF_001422545.1', \n", + " 'Leaf53': 'GCF_001422605.1', 'Leaf58': 'GCF_003627215.1', 'Leaf69': 'GCF_001422645.1', 'Leaf234': 'GCF_001422665.1', 'Leaf72': 'GCF_001422685.1', 'Leaf244': 'GCF_001422695.1', 'Leaf82': 'GCF_001422725.1', \n", + " 'Leaf78': 'GCF_001422735.1', 'Leaf245': 'GCF_942548115.1', 'Leaf87': 'GCF_001422775.1', 'Leaf88': 'GCF_001422795.1', 'Leaf91': 'GCF_001422815.1', 'Leaf100': 'GCF_001422845.1', 'Leaf272': 'GCF_001422865.1', \n", + " 'Leaf104': 'GCF_001422885.1', 'Leaf106': 'GCF_001422895.1', 'Leaf288': 'GCF_001422925.1', 'Leaf285': 'GCF_001422955.1', 'Leaf117': 'GCF_001422985.1', 'Leaf294': 'GCF_001423005.1', 'Leaf296': 'GCF_001423045.1', \n", + " 'Leaf299': 'GCF_001423055.1', 'Leaf125': 'GCF_001423085.1', 'Leaf304': 'GCF_001423105.1', 'Leaf126': 'GCF_001423125.1', 'Leaf307': 'GCF_001423135.1', 'Leaf127': 'GCF_001423155.1', 'Leaf314': 'GCF_001423185.1', \n", + " 'Leaf130': 'GCF_001423205.1', 'Leaf321': 'GCF_001423215.1', 'Leaf324': 'GCF_001423245.1', 'Leaf108': 'GCF_001423265.1', 'Leaf111': 'GCF_001423285.1', 'Leaf112': 'GCF_001423295.1', 'Leaf113': 'GCF_001423325.1', \n", + " 'Leaf289': 'GCF_001423335.1', 'Leaf291': 'GCF_001423365.1', 'Leaf306': 'GCF_001423425.1', 'Leaf311': 'GCF_001423445.1', 'Leaf129': 'GCF_001423465.1', 'Leaf320': 'GCF_001423485.1', 'Leaf131': 'GCF_001423495.1', \n", + " 'Leaf325': 'GCF_001423545.1', 'Leaf148': 'GCF_001423585.1', 'Leaf335': 'GCF_001423605.1', 'Leaf159': 'GCF_001423615.1', 'Leaf161': 'GCF_001423645.1', 'Leaf164': 'GCF_001423665.1', 'Leaf168': 'GCF_001423685.1', \n", + " 'Leaf336': 'GCF_001423695.1', 'Leaf171': 'GCF_001423725.1', 'Leaf337': 'GCF_001423745.1', 'Leaf343': 'GCF_001423765.1', 'Leaf179': 'GCF_001423785.1', 'Leaf347': 'GCF_001423805.1', 'Leaf351': 'GCF_001423825.1', \n", + " 'Leaf357': 'GCF_001423845.1', 'Leaf182': 'GCF_001423865.2', 'Leaf185': 'GCF_001423885.1', 'Leaf186': 'GCF_001423905.1', 'Leaf187': 'GCF_001423925.1', 'Leaf194': 'GCF_001423945.1', 'Leaf196': 'GCF_001423965.1', \n", + " 'Leaf359': 'GCF_001423985.1', 'Leaf198': 'GCF_001424005.1', 'Leaf363': 'GCF_001424025.1', 'Leaf371': 'GCF_001424045.1', 'Leaf384': 'GCF_001424065.1', 'Leaf386': 'GCF_001424085.1', 'Leaf394': 'GCF_001424105.1', \n", + " 'Leaf395': 'GCF_001424125.1', 'Leaf404': 'GCF_001424145.1', 'Leaf139': 'GCF_001424165.1', 'Leaf326': 'GCF_001424185.1', 'Leaf334': 'GCF_001424195.1', 'Leaf151': 'GCF_001424225.1', 'Leaf160': 'GCF_001424265.1', \n", + " 'Leaf172': 'GCF_001424285.1', 'Leaf176': 'GCF_001424305.1', 'Leaf341': 'GCF_001424325.1', 'Leaf177': 'GCF_001424345.1', 'Leaf354': 'GCF_001424365.1', 'Leaf183': 'GCF_001424385.1', 'Leaf189': 'GCF_001424405.1', \n", + " 'Leaf191': 'GCF_001424425.1', 'Leaf361': 'GCF_001424445.1', 'Leaf369': 'GCF_001424455.1', 'Leaf380': 'GCF_001424485.1', 'Leaf391': 'GCF_001424505.1', 'Leaf399': 'GCF_001424525.1', 'Leaf400': 'GCF_001424545.1', \n", + " 'Leaf141': 'GCF_001424565.1', 'Leaf180': 'GCF_001424585.1', 'Leaf154': 'GCF_001424595.1', 'Leaf396': 'GCF_001424605.1', 'Leaf415': 'GCF_001424645.1', 'Leaf416': 'GCF_001424665.1', 'Leaf454': 'GCF_001424685.1', \n", + " 'Leaf465': 'GCF_001424705.1', 'Leaf436': 'GCF_001424715.1', 'Leaf469': 'GCF_001424745.1', 'Leaf446': 'GCF_001424755.1', 'Leaf383': 'GCF_001425345.1', 'Leaf405': 'GCF_001425355.1', 'Leaf407': 'GCF_001425385.1', \n", + " 'Leaf412': 'GCF_001425405.1', 'Leaf414': 'GCF_001425425.1', 'Leaf420': 'GCF_001425445.1', 'Leaf427': 'GCF_001425485.1', 'Leaf459': 'GCF_001425495.1', 'Leaf460': 'GCF_001425525.1', 'Leaf434': 'GCF_001425545.1', \n", + " 'Leaf466': 'GCF_001425565.1', 'Leaf443': 'GCF_001425575.1', 'Leaf453': 'GCF_001425605.1', 'Leaf3': 'GCF_001425965.1', 'Leaf7': 'GCF_001425985.1', 'Leaf94': 'GCF_001426045.1', 'Leaf258': 'GCF_001426065.1', \n", + " 'Leaf278': 'GCF_001426085.1', 'Leaf49': 'GCF_001426125.1', 'Leaf225': 'GCF_001426145.1', 'Leaf233': 'GCF_001426165.1', 'Leaf247': 'GCF_001426185.1', 'Leaf339': 'GCF_001426195.1', 'Leaf344': 'GCF_001426225.1', \n", + " 'Leaf98': 'GCF_003258395.1', 'Leaf73': 'GCF_916855635.1', 'Leaf408': 'GCF_916856905.1', 'Leaf350': 'GCF_916858655.1', 'Leaf21': 'GCF_916858675.1', 'Leaf374': 'GCF_916862475.1', 'Leaf37': 'GCF_920939475.1', \n", + " 'Leaf401': 'GCF_920939485.1', 'Leaf248': 'GCF_920939495.1', 'Leaf4': 'GCF_920939515.1', 'Leaf170': 'GCF_920984665.1', 'Leaf118': 'GCF_920984675.1', 'Leaf59': 'GCF_920984685.1', 'Leaf132': 'GCF_920984695.1', \n", + " 'Leaf313': 'GCF_920984705.1', 'Leaf205': 'GCF_920984725.1', 'Leaf250': 'GCF_920984735.1'}\n", "\n", - "df = DataFrame({\"test\": [1,2.1231,3], \"test2\": [2,3,4.12312]})\n", - "df.applymap(lambda x: round(x, 3))" + "genBank_models = {leaf_to_genbank[model.replace(\"L\", \"Leaf\")] for model in all_examined_models if model.replace(\"L\", \"Leaf\") in leaf_to_genbank}\n", + "print(genBank_models)" ] }, { "cell_type": "code", - "execution_count": 6, - "id": "414b91e8-10e3-41e1-88e2-ed8aeb452694", - "metadata": {}, + "execution_count": 1, + "id": "2a94eea5-c830-4028-88a0-1414e2fae4ad", + "metadata": { + "tags": [] + }, "outputs": [ { - "data": { - "text/plain": [ - "8388608000" - ] - }, - "execution_count": 6, - "metadata": {}, - "output_type": "execute_result" + "name": "stdout", + "output_type": "stream", + "text": [ + "modelseedpy 0.2.2\n", + "cobrakbase 0.3.1\n" + ] + } + ], + "source": [ + "import os\n", + "local_cobrakbase_path = os.path.join('C:', 'Users', 'Andrew Freiburger','Documents','Argonne','cobrakbase')\n", + "os.environ[\"HOME\"] = local_cobrakbase_path\n", + "\n", + "# import the KBase\n", + "import cobrakbase\n", + "# with open(\"/Users/afreiburger/Documents/kbase_token.txt\") as token_file:\n", + "with open(\"D:/Users/Andrew Freiburger/Documents/Argonne/kbase_token.txt\") as token_file:\n", + " kbase_api = cobrakbase.KBaseAPI(token_file.readline())" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "65543502-d39f-4e78-b473-e86d71db1f2f", + "metadata": { + "tags": [] + }, + "outputs": [], + "source": [ + "# original KBase models\n", + "GCF_001424595 = kbase_api.get_from_ws(\"136582/820/1\") ; GCF_001421165 = kbase_api.get_from_ws(\"136582/723/1\") ; GCF_001421425 = kbase_api.get_from_ws(\"136582/517/1\") ; GCF_001421805 = kbase_api.get_from_ws(\"136582/435/1\")\n", + "GCF_001423105 = kbase_api.get_from_ws(\"136582/589/1\") ; GCF_001423785 = kbase_api.get_from_ws(\"136582/587/1\") ; GCF_001423665 = kbase_api.get_from_ws(\"136582/677/1\") ; GCF_001426165 = kbase_api.get_from_ws(\"136582/491/1\")\n", + "GCF_001422185 = kbase_api.get_from_ws(\"136582/423/1\")" + ] + }, + { + "cell_type": "code", + "execution_count": 21, + "id": "5cb2d592-9ef3-410f-ac80-e89f9518d731", + "metadata": { + "collapsed": true, + "jupyter": { + "outputs_hidden": true + }, + "tags": [] + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "['2.4 g K2HPO4', '1.08 g NaH2PO4 · 2H2O', '1.62 g NH4Cl and 0.2 g MgSO4 · 7H2O', 'and 15 g noble agar (Becton', 'Dickinson and Company). The medium was supplemented with the following trace elements: 15 mg Na2EDTA · 2H2O', '3 mg FeSO4 · 7H2O', '4.5 mg ZnSO4 · 7H2O', '3 mg CoCl2 · 6H2O', '0.64 mg MnCl2', '1 mg H3BO3', '0.4 mg Na2MoO4 · 2H2O', '0.3 mg CuSO4 · 5H2O', 'and 3 mg CaCl2 · 2H2O', 'and vitamins: 500 mg D-pantothenic acid hemi calcium salt', '100 mg biotin', '400 mg riboflavin', '400 mg thiamine HCl', '200 mg pyridoxal HCl', '150 mg p-amino benzoic acid', '200 mg cobalamin', '50 mg lipoic\\nacid', '150 mg nicotinic acid', 'and 100 mg folic acid']\n" + ] + } + ], + "source": [ + "experimental_media = [x.strip() for x in \"\"\" 2.4 g K2HPO4, 1.08 g NaH2PO4 · 2H2O, 1.62 g NH4Cl and 0.2 g MgSO4 · 7H2O, and 15 g noble agar (Becton, Dickinson and Company). The medium was supplemented with the following trace elements: 15 mg Na2EDTA · 2H2O, 3 mg FeSO4 · 7H2O, \n", + "4.5 mg ZnSO4 · 7H2O, 3 mg CoCl2 · 6H2O, 0.64 mg MnCl2, 1 mg H3BO3, 0.4 mg Na2MoO4 · 2H2O, 0.3 mg CuSO4 · 5H2O, and 3 mg CaCl2 · 2H2O, and vitamins: 500 mg D-pantothenic acid hemi calcium salt, 100 mg biotin, 400 mg riboflavin, 400 mg thiamine HCl, 200 mg pyridoxal HCl, 150 mg p-amino benzoic acid, 200 mg cobalamin, 50 mg lipoic\n", + "acid, 150 mg nicotinic acid, and 100 mg folic acid\"\"\".split(\",\")]\n", + "print(experimental_media)" + ] + }, + { + "cell_type": "code", + "execution_count": 19, + "id": "18d2e1f8-1c49-462a-823b-e484f117aeca", + "metadata": { + "collapsed": true, + "jupyter": { + "outputs_hidden": true + }, + "scrolled": true, + "tags": [] + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "cpd00063 Ca2+\n", + "cpd00099 Cl-\n", + "cpd00149 Co2+\n", + "cpd00058 Cu2+\n", + "cpd10515 Fe+2\n", + "cpd10516 Fe+3\n", + "cpd00001 H2O\n", + "cpd00205 K+\n", + "cpd00254 Mg\n", + "cpd00030 Mn2+\n", + "cpd11574 Molybdate\n", + "cpd00971 Na+\n", + "cpd00013 NH3\n", + "cpd00244 Ni2+\n", + "cpd00007 O2\n", + "cpd00009 Phosphate\n", + "cpd00048 Sulfate\n", + "cpd00034 Zn2+\n", + "cpd00305 Thiamin\n", + "cpd00104 BIOT\n", + "cpd00220 Riboflavin\n", + "cpd00215 Pyridoxal\n", + "cpd00635 Cbl\n", + "cpd00541 Lipoate\n", + "cpd00393 Folate\n", + "cpd00644 PAN\n", + "cpd00218 Niacin\n", + "cpd00443 ABEE\n" + ] + } + ], + "source": [ + "base_media = {\n", + " \"cpd00063\": 1000,\n", + " \"cpd00099\": 1000,\n", + " \"cpd00149\": 1000,\n", + " \"cpd00058\": 1000,\n", + " \"cpd10515\": 1000,\n", + " \"cpd10516\": 1000,\n", + " \"cpd00001\": 1000,\n", + " \"cpd00205\": 1000,\n", + " \"cpd00254\": 1000,\n", + " \"cpd00030\": 1000,\n", + " \"cpd11574\": 1000,\n", + " \"cpd00971\": 1000,\n", + " \"cpd00013\": 1000,\n", + " \"cpd00244\": 1000,\n", + " \"cpd00007\": 1000,\n", + " \"cpd00009\": 1000,\n", + " \"cpd00048\": 1000,\n", + " \"cpd00034\": 1000,\n", + " \"cpd00305\": 1000,\n", + " \"cpd00104\": 1000,\n", + " \"cpd00220\": 1000,\n", + " \"cpd00215\": 1000,\n", + " \"cpd00635\": 1000,\n", + " \"cpd00541\": 1000,\n", + " \"cpd00393\": 1000,\n", + " \"cpd00644\": 1000,\n", + " \"cpd00218\": 1000,\n", + " \"cpd00443\": 1000,\n", + "}\n", + "\n", + "from modelseedpy.biochem import from_local\n", + "\n", + "msdb = from_local(\"../../../../ModelSEEDDatabase\")\n", + "for cpd in base_media:\n", + " compound = msdb.compounds.get_by_id(cpd)\n", + " print(cpd, compound.name)" + ] + }, + { + "cell_type": "code", + "execution_count": 20, + "id": "5a70d42a-7f25-43ca-a594-38ea0b49c532", + "metadata": { + "collapsed": true, + "jupyter": { + "outputs_hidden": true + }, + "tags": [] + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "cpd00027 D-Glucose\n", + "cpd00108 Galactose\n", + "cpd00082 D-Fructose\n", + "cpd00138 D-Mannose\n", + "cpd00314 D-Mannitol\n", + "cpd00076 Sucrose\n", + "cpd00154 Xylose\n", + "cpd00224 L-Arabinose\n", + "cpd00121 L-Inositol\n", + "cpd00158 CELB\n", + "cpd00794 TRHL\n", + "cpd00179 Maltose\n", + "cpd00029 Acetate\n", + "cpd00180 Oxalate\n", + "cpd00047 Formate\n", + "cpd00036 Succinate\n", + "cpd00222 GLCN\n", + "cpd00020 Pyruvate\n", + "cpd00280 D-Galacturonate\n", + "cpd00035 L-Alanine\n", + "cpd00051 L-Arginine\n", + "cpd00132 L-Asparagine\n", + "cpd00041 L-Aspartate\n", + "cpd00084 L-Cysteine\n", + "cpd00023 L-Glutamate\n", + "cpd00053 L-Glutamine\n", + "cpd00033 Glycine\n", + "cpd00119 L-Histidine\n", + "cpd00322 L-Isoleucine\n", + "cpd00107 L-Leucine\n", + "cpd00039 L-Lysine\n", + "cpd00060 L-Methionine\n", + "cpd00129 L-Proline\n", + "cpd00054 L-Serine\n", + "cpd00161 L-Threonine\n", + "cpd00156 L-Valine\n", + "cpd00064 Ornithine\n", + "cpd00065 L-Tryptophan\n", + "cpd00069 L-Tyrosine\n", + "cpd00066 L-Phenylalanine\n", + "cpd00116 Methanol\n", + "cpd00100 Glycerol\n", + "cpd00458 Coniferol\n", + "cpd00153 Benzoate\n", + "cpd00187 Methanamine\n" + ] } ], "source": [ - "524288000*16" + "variable_Cs = [\"cpd00027\", \"cpd00108\", \"cpd00082\", \"cpd00138\", \"cpd00314\", \"cpd00076\", \"cpd00154\", \"cpd00224\", \"cpd00121\", \"cpd00158\", \"cpd00794\", \"cpd00179\", \"cpd00029\", \"cpd00180\", \"cpd00047\", \"cpd00036\", \"cpd00222\",\n", + " \"cpd00020\", \"cpd00280\", \"cpd00035\", \"cpd00051\", \"cpd00132\", \"cpd00041\", \"cpd00084\", \"cpd00023\", \"cpd00053\", \"cpd00033\", \"cpd00119\", \"cpd00322\", \"cpd00107\", \"cpd00039\", \"cpd00060\", \"cpd00129\", \"cpd00054\",\n", + " \"cpd00161\", \"cpd00156\", \"cpd00064\", \"cpd00065\", \"cpd00069\", \"cpd00066\", \"cpd00116\", \"cpd00100\", \"cpd00458\", \"cpd00153\", \"cpd00187\"]\n", + "for cpd in variable_Cs:\n", + " compound = msdb.compounds.get_by_id(cpd)\n", + " print(cpd, compound.name)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "d11948bf-23e9-4ad6-94d7-62e0ee5f1c86", + "metadata": { + "tags": [] + }, + "outputs": [], + "source": [ + "experimental_base_media = {\n", + " \"cpd00063\": 1000,\n", + " \"cpd00099\": 1000,\n", + " \"cpd00149\": 1000,\n", + " \"cpd00058\": 1000,\n", + " \"cpd10515\": 1000,\n", + " \"cpd00001\": 1000,\n", + " \"cpd00205\": 1000,\n", + " \"cpd00254\": 1000,\n", + " \"cpd00030\": 1000,\n", + " \"cpd11574\": 1000,\n", + " \"cpd00971\": 1000,\n", + " \"cpd00013\": 1000,\n", + " \"cpd00007\": 1000,\n", + " \"cpd00009\": 1000,\n", + " \"cpd00048\": 1000,\n", + " \"cpd00034\": 1000,\n", + " \"cpd00305\": 1000,\n", + " \"cpd00104\": 1000,\n", + " \"cpd00220\": 1000,\n", + " \"cpd00215\": 1000,\n", + " \"cpd00635\": 1000,\n", + " \"cpd00541\": 1000,\n", + " \"cpd00393\": 1000,\n", + " \"cpd00644\": 1000,\n", + " \"cpd00218\": 1000,\n", + " \"cpd09225\": 1000,\n", + " \"cpd00240\": 1000\n", + "}" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "ea3ed9e3-db56-4543-b29e-a342e40b5a05", + "metadata": { + "tags": [] + }, + "outputs": [], + "source": [ + "fba_base_media = {\n", + " \"cpd00063\": 1000,\n", + " \"cpd00099\": 1000,\n", + " \"cpd00149\": 1000,\n", + " \"cpd00058\": 1000,\n", + " \"cpd10515\": 1000,\n", + " \"cpd10516\": 1000,\n", + " \"cpd00001\": 1000,\n", + " \"cpd00205\": 1000,\n", + " \"cpd00254\": 1000,\n", + " \"cpd00030\": 1000,\n", + " \"cpd11574\": 1000,\n", + " \"cpd00971\": 1000,\n", + " \"cpd00013\": 1000,\n", + " \"cpd00244\": 1000,\n", + " \"cpd00007\": 1000,\n", + " \"cpd00009\": 1000,\n", + " \"cpd00048\": 1000,\n", + " \"cpd00034\": 1000,\n", + " \"cpd00305\": 1000,\n", + " \"cpd00104\": 1000,\n", + " \"cpd00220\": 1000,\n", + " \"cpd00215\": 1000,\n", + " \"cpd00635\": 1000,\n", + " \"cpd00541\": 1000,\n", + " \"cpd00393\": 1000,\n", + " \"cpd00644\": 1000,\n", + " \"cpd00218\": 1000,\n", + " \"cpd00443\": 1000,\n", + "}\n", + "\n", + "%run ../../../modelseedpy/core/fbahelper.py\n", + "\n", + "r2a_methanol_media = FBAHelper.convert_kbase_media(kbase_api.get_from_ws(\"152904/21/1\"), 1000)\n", + "r2a_media = FBAHelper.convert_kbase_media(kbase_api.get_from_ws(\"152904/16/1\"), 1000)\n", + "maltose_media = FBAHelper.convert_kbase_media(kbase_api.get_from_ws(\"152904/19/1\"), 1000)\n", + "\n", + "variable_Cs = [\"cpd00027\", \"cpd00108\", \"cpd00082\", \"cpd00138\", \"cpd00314\", \"cpd00076\", \"cpd00154\", \"cpd00224\", \"cpd00121\", \"cpd00158\", \"cpd00794\", \"cpd00179\", \"cpd00029\", \"cpd00180\", \"cpd00047\", \"cpd00036\", \"cpd00222\",\n", + " \"cpd00020\", \"cpd00280\", \"cpd00035\", \"cpd00051\", \"cpd00132\", \"cpd00041\", \"cpd00084\", \"cpd00023\", \"cpd00053\", \"cpd00033\", \"cpd00119\", \"cpd00322\", \"cpd00107\", \"cpd00039\", \"cpd00060\", \"cpd00129\", \"cpd00054\",\n", + " \"cpd00161\", \"cpd00156\", \"cpd00064\", \"cpd00065\", \"cpd00069\", \"cpd00066\", \"cpd00116\", \"cpd00100\", \"cpd00458\", \"cpd00153\", \"cpd00187\"]\n", + "\n", + "\n", + "def media_variations(base_media, variable_cpds):\n", + " media = []\n", + " for variation in variable_cpds:\n", + " base = base_media.copy()\n", + " base.update({variation: 1000})\n", + " media.append(base)\n", + " # print(\"All media variations [Notebook print]\\n\", \"\\n\".join([str(medium) for medium in media]))\n", + " return media" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "3d8fb964-53a6-4816-88c7-be35a338cf48", + "metadata": {}, + "outputs": [], + "source": [ + "# new KBase models\n", + "# GCF_001424595 = kbase_api.get_from_ws(\"153650/30/1\") ; GCF_001421165 = kbase_api.get_from_ws(\"153650/32/1\") ; GCF_001421425 = kbase_api.get_from_ws(\"153650/43/1\") ; GCF_001421805 = kbase_api.get_from_ws(\"153650/45/1\")\n", + "# GCF_001423105 = kbase_api.get_from_ws(\"153650/36/1\") ; GCF_001423785 = kbase_api.get_from_ws(\"153650/38/1\") ; GCF_001423665 = kbase_api.get_from_ws(\"153650/40/1\") ; GCF_001426165 = kbase_api.get_from_ws(\"153650/64/1\")\n", + "# GCF_001422185 = kbase_api.get_from_ws(\"153650/34/1\") ; GCF_001421235 = kbase_api.get_from_ws(\"153650/57/1\") ; GCF_001423565 = kbase_api.get_from_ws(\"153650/59/1\")\n", + "\n", + "GCF_001424595 = kbase_api.get_from_ws(\"154981/88/1\") ; GCF_001421165 = kbase_api.get_from_ws(\"154981/96/1\") ; GCF_001421425 = kbase_api.get_from_ws(\"154981/89/1\") ; GCF_001421805 = kbase_api.get_from_ws(\"154981/90/1\")\n", + "GCF_001423105 = kbase_api.get_from_ws(\"154981/91/1\") ; GCF_001423785 = kbase_api.get_from_ws(\"154981/92/1\") ; GCF_001423665 = kbase_api.get_from_ws(\"154981/93/1\") ; GCF_001426165 = kbase_api.get_from_ws(\"154981/87/1\")\n", + "GCF_001422185 = kbase_api.get_from_ws(\"154981/95/1\") ; GCF_001421235 = kbase_api.get_from_ws(\"154981/85/1\") ; GCF_001423565 = kbase_api.get_from_ws(\"154981/84/1\")" + ] + }, + { + "cell_type": "code", + "execution_count": 12, + "id": "6fbc94e8-87b3-4212-8fe3-9ef2cca343af", + "metadata": { + "tags": [] + }, + "outputs": [], + "source": [ + "# from cobra.io import write_sbml_model\n", + "# from os import path\n", + "\n", + "# for model in MSmodels:\n", + "# write_sbml_model(model, path.join(\"vorholt models\", model.id))" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "id": "d775718f-e98b-4e04-a3e9-1c3f3276a1d8", + "metadata": { + "collapsed": true, + "jupyter": { + "outputs_hidden": true + }, + "tags": [] + }, + "outputs": [ + { + "data": { + "text/plain": [ + "{'EX_cpd03424_e0': 1000,\n", + " 'EX_cpd00215_e0': 1000,\n", + " 'EX_cpd00028_e0': 1000,\n", + " 'EX_cpd10515_e0': 1000,\n", + " 'EX_cpd00030_e0': 1000,\n", + " 'EX_cpd00149_e0': 1000,\n", + " 'EX_cpd00058_e0': 1000,\n", + " 'EX_cpd00099_e0': 1000,\n", + " 'EX_cpd00007_e0': 1000,\n", + " 'EX_cpd00034_e0': 1000,\n", + " 'EX_cpd00156_e0': 1000,\n", + " 'EX_cpd00249_e0': 1000,\n", + " 'EX_cpd00092_e0': 1000,\n", + " 'EX_cpd00069_e0': 1000,\n", + " 'EX_cpd00065_e0': 1000,\n", + " 'EX_cpd00184_e0': 1000,\n", + " 'EX_cpd00161_e0': 1000,\n", + " 'EX_cpd00048_e0': 1000,\n", + " 'EX_cpd00054_e0': 1000,\n", + " 'EX_cpd00220_e0': 1000,\n", + " 'EX_cpd00129_e0': 1000,\n", + " 'EX_cpd00644_e0': 1000,\n", + " 'EX_cpd00009_e0': 1000,\n", + " 'EX_cpd00066_e0': 1000,\n", + " 'EX_cpd00218_e0': 1000,\n", + " 'EX_cpd00971_e0': 1000,\n", + " 'EX_cpd00254_e0': 1000,\n", + " 'EX_cpd00060_e0': 1000,\n", + " 'EX_cpd00039_e0': 1000,\n", + " 'EX_cpd00107_e0': 1000,\n", + " 'EX_cpd00205_e0': 1000,\n", + " 'EX_cpd00246_e0': 1000,\n", + " 'EX_cpd00322_e0': 1000,\n", + " 'EX_cpd00226_e0': 1000,\n", + " 'EX_cpd00119_e0': 1000,\n", + " 'EX_cpd00531_e0': 1000,\n", + " 'EX_cpd00001_e0': 1000,\n", + " 'EX_cpd00067_e0': 1000,\n", + " 'EX_cpd00033_e0': 1000,\n", + " 'EX_cpd00023_e0': 1000,\n", + " 'EX_cpd00027_e0': 1000,\n", + " 'EX_cpd00393_e0': 1000,\n", + " 'EX_cpd10516_e0': 1000,\n", + " 'EX_cpd00654_e0': 1000,\n", + " 'EX_cpd00438_e0': 1000,\n", + " 'EX_cpd00381_e0': 1000,\n", + " 'EX_cpd11595_e0': 1000,\n", + " 'EX_cpd01012_e0': 1000,\n", + " 'EX_cpd00063_e0': 1000,\n", + " 'EX_cpd00041_e0': 1000,\n", + " 'EX_cpd01048_e0': 1000,\n", + " 'EX_cpd00051_e0': 1000,\n", + " 'EX_cpd00035_e0': 1000,\n", + " 'EX_cpd00182_e0': 1000,\n", + " 'EX_cpd00311_e0': 1000,\n", + " 'EX_cpd00126_e0': 1000,\n", + " 'EX_cpd00018_e0': 1000,\n", + " 'EX_cpd00091_e0': 1000,\n", + " 'EX_cpd00046_e0': 1000,\n", + " 'EX_cpd00793_e0': 1000,\n", + " 'EX_cpd00541_e0': 1000,\n", + " 'EX_cpd00239_e0': 1000,\n", + " 'EX_cpd00013_e0': 1000,\n", + " 'EX_cpd00244_e0': 1000,\n", + " 'EX_cpd11574_e0': 1000,\n", + " 'EX_cpd00020_e0': 1000,\n", + " 'EX_cpd11657_e0': 1000,\n", + " 'EX_cpd00116_e0': 1000}" + ] + }, + "execution_count": 11, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# r2a_methanol_media = FBAHelper.convert_kbase_media(kbase_api.get_from_ws(\"154981/21/1\"), 1000)\n", + "# r2a_methanol_media" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "f32e9eb7-397b-4a99-9c96-e5a871eb7d57", + "metadata": {}, + "outputs": [], + "source": [ + "%run ../../../modelseedpy/community/mscommunity.py\n", + "\n", + "CommScores.report_generation([GCF_001424595, GCF_001421165], environments)" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "14866b2f-69e7-4112-a244-cb20176c76fa", + "metadata": {}, + "outputs": [], + "source": [ + "MSmodels = [GCF_001424595, GCF_001421165, GCF_001421425, GCF_001421805, GCF_001423105, GCF_001423785, GCF_001423665, GCF_001426165, GCF_001422185, GCF_001421235, GCF_001423565]" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "ea2178a3-c787-4c7d-8c07-844dc123ef2d", + "metadata": {}, + "outputs": [], + "source": [ + "# members_minimal_media = {'GCF_001421165.1.RAST.fbamodel': {'media': {'EX_cpd00051_e0': 12.59859933717156, 'EX_cpd00063_e0': 0.1433081891404223, 'EX_cpd00058_e0': 0.14330818914042226, 'EX_cpd00184_e0': 0.4695217593295476, 'EX_cpd00118_e0': 0.14330818914042226, 'EX_cpd00161_e0': 721.1045817926323, 'EX_cpd00104_e0': 0.14330818914042226, 'EX_cpd00034_e0': 0.14330818914042226, 'EX_cpd00069_e0': 6.162852744356453, 'EX_cpd00149_e0': 0.14330818914042223, 'EX_cpd00264_e0': 0.14330818914042226, 'EX_cpd10515_e0': 0.4299245674212667, 'EX_cpd00132_e0': 10.256260471235334, 'EX_cpd00254_e0': 0.14330818914042226, 'EX_cpd00053_e0': 163.94401872560388, 'EX_cpd00218_e0': 0.2866163782810432, 'EX_cpd00007_e0': 0.35827047285105573, 'EX_cpd00039_e0': 14.577079738496302, 'EX_cpd00393_e0': 0.42992456742126617, 'EX_cpd00794_e0': 839.4121650267742, 'EX_cpd00080_e0': 1000.0, 'EX_cpd00054_e0': 999.9999999999999, 'EX_cpd00048_e0': 0.1433081891404223, 'EX_cpd00644_e0': 0.2866163782808558, 'EX_cpd00100_e0': 600.0518797872196, 'EX_cpd00030_e0': 0.1433081891404223, 'EX_cpd00065_e0': 2.41056232805087, 'EX_cpd00060_e0': 6.670019398108366, 'EX_cpd00239_e0': 1000.0000000000182, 'EX_cpd00106_e0': 147.9233178675603, 'EX_cpd00156_e0': 17.98825284422867, 'EX_cpd00066_e0': 7.891180451260871, 'EX_cpd00119_e0': 4.047925418802407, 'EX_cpd00793_e0': 0.14330818914042223, 'EX_cpd00017_e0': 1.003157323982956, 'EX_cpd00220_e0': 0.4299245674212668, 'EX_cpd00099_e0': 0.14330818914042223, 'EX_cpd00092_e0': 10.243560714688885, 'EX_cpd00028_e0': 0.14330818914042226, 'EX_cpd00107_e0': 19.170792854215925, 'EX_cpd00205_e0': 0.14330818914042226}}, 'GCF_001423785.1.RAST.fbamodel': {'media': {'EX_cpd00051_e0': 16.868043864445188, 'EX_cpd00063_e0': 0.19187282299093658, 'EX_cpd00731_e0': 1.7101146850768332, 'EX_cpd00058_e0': 0.19187282299093658, 'EX_cpd00118_e0': 0.19187282299093658, 'EX_cpd00161_e0': 1000.0, 'EX_cpd00104_e0': 0.19187282299093658, 'EX_cpd00034_e0': 0.19187282299093658, 'EX_cpd00307_e0': 1000.0, 'EX_cpd00069_e0': 8.251335536578738, 'EX_cpd00149_e0': 0.1918728229909366, 'EX_cpd00264_e0': 0.19187282299093658, 'EX_cpd10515_e0': 0.5756184689728099, 'EX_cpd00322_e0': 15.190009044828317, 'EX_cpd00137_e0': 44.26356109314145, 'EX_cpd00132_e0': 13.731927405893103, 'EX_cpd00254_e0': 0.19187282299093658, 'EX_cpd00053_e0': 46.38664592298412, 'EX_cpd00218_e0': 0.38374564598127925, 'EX_cpd00007_e0': 771.4595261416803, 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'EX_cpd00084_e0': 11.363615427448842, 'EX_cpd00017_e0': 17.55069902417948, 'EX_cpd00220_e0': 1.131252584970161, 'EX_cpd00099_e0': 0.37708419499005363, 'EX_cpd00028_e0': 0.3770841949900536, 'EX_cpd00107_e0': 50.4437536620441, 'EX_cpd00205_e0': 0.3770841949900536}}, 'GCF_001423665.1.RAST.fbamodel': {'media': {'EX_cpd00051_e0': 15.546231065993515, 'EX_cpd10516_e0': 0.5305118836788759, 'EX_cpd00063_e0': 0.1768372945596253, 'EX_cpd00309_e0': 17.317854473758544, 'EX_cpd00058_e0': 0.17683729455962527, 'EX_cpd00179_e0': 40.3927667782, 'EX_cpd00118_e0': 0.1768372945596253, 'EX_cpd00161_e0': 225.7175850942347, 'EX_cpd00104_e0': 0.17683729455962527, 'EX_cpd00034_e0': 0.17683729455962527, 'EX_cpd00069_e0': 7.6047447994300015, 'EX_cpd00149_e0': 0.17683729455962527, 'EX_cpd00264_e0': 0.1768372945596253, 'EX_cpd00322_e0': 13.999690325872457, 'EX_cpd00132_e0': 12.655866806431543, 'EX_cpd00254_e0': 0.17683729455962527, 'EX_cpd00053_e0': 1000.0, 'EX_cpd00218_e0': 0.35367458911917377, 'EX_cpd00007_e0': 549.1734549252873, 'EX_cpd00039_e0': 17.987606702710867, 'EX_cpd00393_e0': 0.5305118836788758, 'EX_cpd00794_e0': 463.0475403893679, 'EX_cpd00080_e0': 51.02790593349494, 'EX_cpd00054_e0': 15.223271445342721, 'EX_cpd00048_e0': 0.1768372945596253, 'EX_cpd00644_e0': 0.35367458911953537, 'EX_cpd00030_e0': 0.1768372945596253, 'EX_cpd00065_e0': 2.974549626345271, 'EX_cpd00060_e0': 8.230570716834249, 'EX_cpd00023_e0': 284.51951103696325, 'EX_cpd00276_e0': 17.354865881922805, 'EX_cpd00156_e0': 22.196875041878776, 'EX_cpd00066_e0': 9.737440757941766, 'EX_cpd00119_e0': 4.994998429145922, 'EX_cpd00793_e0': 0.17683729455962527, 'EX_cpd00084_e0': 4.091216728413201, 'EX_cpd00017_e0': 1.2378610619173769, 'EX_cpd00220_e0': 0.5305118836788947, 'EX_cpd00099_e0': 0.1768372945596253, 'EX_cpd00092_e0': 13.219525378221931, 'EX_cpd00028_e0': 0.17683729455962527, 'EX_cpd00107_e0': 23.656088066123704, 'EX_cpd00205_e0': 0.17683729455962527}}}\n", + "members_minimal_media_new = {'GCF_001423665.1.RAST.mdl': {'media': {'EX_cpd00138_e0': 1000.0000000000002, 'EX_cpd00254_e0': 0.498421035001218, 'EX_cpd11591_e0': 11.859528514023918, 'EX_cpd00239_e0': 2.705136881975761, 'EX_cpd00080_e0': 457.93893853018636, 'EX_cpd00099_e0': 0.49842103500121815, 'EX_cpd00034_e0': 0.498421035001218, 'EX_cpd10516_e0': 0.498421035001218, 'EX_cpd00071_e0': 999.9999999999999, 'EX_cpd00029_e0': 451.7288820181455, 'EX_cpd15606_e0': 8.189269039361996, 'EX_cpd11640_e0': 182.93388812164787, 'EX_cpd00092_e0': 5.537142336059068, 'EX_cpd00205_e0': 0.498421035001218, 'EX_cpd00793_e0': 0.4984210350012181, 'EX_cpd00027_e0': 1000.0, 'EX_cpd00063_e0': 0.4984210350012181, 'EX_cpd00028_e0': 0.498421035001218, 'EX_cpd00156_e0': 23.691089481666133, 'EX_cpd15605_e0': 12.994043125186936, 'EX_cpd00118_e0': 0.9968420700024362, 'EX_cpd00129_e0': 966.644666593217, 'EX_cpd00132_e0': 10.93917118911086, 'EX_cpd00001_e0': 1000.0, 'EX_cpd00104_e0': 0.498421035001218, 'EX_cpd00309_e0': 12.508951386002742, 'EX_cpd00149_e0': 0.498421035001218, 'EX_cpd00030_e0': 0.4984210350012181, 'EX_cpd10515_e0': 0.9968420700024362, 'EX_cpd15604_e0': 25.625461791066325, 'EX_cpd00048_e0': 0.4984210350012181, 'EX_cpd11584_e0': 6.0437409884590405, 'EX_cpd00007_e0': 999.9999999999998, 'EX_cpd00794_e0': 24.057183336058777, 'EX_cpd00276_e0': 131.85106546739325, 'EX_cpd00058_e0': 0.498421035001218}}, 'GCF_001421425.1.RAST.mdl': {'media': {'EX_cpd00268_e0': 0.5535064062472592, 'EX_cpd01017_e0': 0.959673234896009, 'EX_cpd00367_e0': 8.671531654956295e-12, 'EX_cpd00254_e0': 0.9596732348960085, 'EX_cpd00119_e0': 11.636781070553958, 'EX_cpd00080_e0': 1000.0, 'EX_cpd00099_e0': 0.9596732348960085, 'EX_cpd00209_e0': 207.53494202662617, 'EX_cpd00082_e0': 82.231143580267, 'EX_cpd00034_e0': 0.9596732348960085, 'EX_cpd10516_e0': 0.9596732348960085, 'EX_cpd00307_e0': 10.661362431688817, 'EX_cpd01080_e0': 29.51900787876525, 'EX_cpd00054_e0': 46.046236159515104, 'EX_cpd00205_e0': 0.9596732348960088, 'EX_cpd00793_e0': 0.9596732348960088, 'EX_cpd00179_e0': 48.615999975802296, 'EX_cpd00063_e0': 0.9596732348960086, 'EX_cpd00322_e0': 7.541833153758007e-13, 'EX_cpd00311_e0': 12.55395480116028, 'EX_cpd00028_e0': 0.9596732348960086, 'EX_cpd01914_e0': 24.7540008967814, 'EX_cpd00065_e0': 7.738459411918382, 'EX_cpd00039_e0': 45.96528522868814, 'EX_cpd00051_e0': 27.46280332650734, 'EX_cpd00355_e0': 1.9193464697919935, 'EX_cpd00156_e0': 45.61545938972203, 'EX_cpd00118_e0': 0.9596732348960088, 'EX_cpd00107_e0': 49.33995173914878, 'EX_cpd00136_e0': 0.9596732348960142, 'EX_cpd00128_e0': 21.12784819842611, 'EX_cpd00024_e0': 806.8044258286885, 'EX_cpd00149_e0': 0.9596732348960088, 'EX_cpd00030_e0': 0.9596732348960086, 'EX_cpd10515_e0': 1.9193464697920175, 'EX_cpd00069_e0': 15.767838350600613, 'EX_cpd15603_e0': 4.175200115651611, 'EX_cpd00066_e0': 25.019079301691015, 'EX_cpd00162_e0': 521.1845679304075, 'EX_cpd00264_e0': 0.9596732348960086, 'EX_cpd00033_e0': 106.94745481830026, 'EX_cpd00007_e0': 258.5884620563717, 'EX_cpd00058_e0': 0.9596732348960088}}, 'GCF_001421165.1.RAST.mdl': {'media': {'EX_cpd00254_e0': 0.783610742414813, 'EX_cpd11591_e0': 3.746363783708947, 'EX_cpd00239_e0': 104.25297925152192, 'EX_cpd00080_e0': 136.95338488596707, 'EX_cpd00099_e0': 0.7836107424148129, 'EX_cpd00047_e0': 990.5966710910222, 'EX_cpd00034_e0': 0.783610742414813, 'EX_cpd00137_e0': 377.8837260433707, 'EX_cpd10516_e0': 0.783610742414813, 'EX_cpd00644_e0': 1.5672214848296417, 'EX_cpd15606_e0': 13.658667654395698, 'EX_cpd11640_e0': 94.42071340317025, 'EX_cpd00092_e0': 8.705419539135445, 'EX_cpd00205_e0': 0.783610742414813, 'EX_cpd00793_e0': 0.783610742414813, 'EX_cpd00063_e0': 0.7836107424148129, 'EX_cpd00081_e0': 100.00000000000001, 'EX_cpd00028_e0': 0.783610742414813, 'EX_cpd00158_e0': 477.8008536237634, 'EX_cpd00156_e0': 35.679585759769886, 'EX_cpd15605_e0': 20.429057092810993, 'EX_cpd00118_e0': 0.7836107424148128, 'EX_cpd00129_e0': 498.8108386394637, 'EX_cpd00132_e0': 17.19841550604088, 'EX_cpd00104_e0': 0.783610742414813, 'EX_cpd00149_e0': 0.783610742414813, 'EX_cpd00030_e0': 0.7836107424148129, 'EX_cpd10515_e0': 1.5672214848296258, 'EX_cpd11590_e0': 14.89902493577346, 'EX_cpd15603_e0': 7.706562849019979e-11, 'EX_cpd15604_e0': 40.288000964427255, 'EX_cpd00048_e0': 0.7836107424148129, 'EX_cpd00264_e0': 0.7836107424148133, 'EX_cpd11584_e0': 9.501887019912086, 'EX_cpd00007_e0': 553.5262483408665, 'EX_cpd00794_e0': 37.822375001352455, 'EX_cpd00276_e0': 32.89488285912624, 'EX_cpd00058_e0': 0.783610742414813}}, 'GCF_001423105.1.RAST.mdl': {'media': {'EX_cpd00254_e0': 0.7835210433537692, 'EX_cpd11591_e0': 0.27696356725979354, 'EX_cpd00080_e0': 136.9377079824158, 'EX_cpd00099_e0': 0.7835210433537692, 'EX_cpd00047_e0': 990.5977474797551, 'EX_cpd00082_e0': 594.2904548426725, 'EX_cpd00034_e0': 0.7835210433537693, 'EX_cpd00137_e0': 1.8130052101804912e-11, 'EX_cpd10516_e0': 0.7835210433537693, 'EX_cpd00071_e0': 1000.0, 'EX_cpd00307_e0': 8.704423039322213, 'EX_cpd00644_e0': 1.5670420867073898, 'EX_cpd15606_e0': 12.87358311835685, 'EX_cpd00363_e0': 48.31333410919995, 'EX_cpd00205_e0': 0.7835210433537693, 'EX_cpd00793_e0': 0.7835210433537693, 'EX_cpd00063_e0': 0.7835210433537694, 'EX_cpd00028_e0': 0.7835210433537693, 'EX_cpd01914_e0': 18.36629083505325, 'EX_cpd00156_e0': 35.67550155677489, 'EX_cpd15605_e0': 20.42671860108283, 'EX_cpd00129_e0': 483.2123109212939, 'EX_cpd11580_e0': 5.1750946368034146e-27, 'EX_cpd00132_e0': 17.196446822306935, 'EX_cpd00104_e0': 0.7835210433537693, 'EX_cpd00149_e0': 0.7835210433537692, 'EX_cpd00030_e0': 0.7835210433537694, 'EX_cpd10515_e0': 1.5670420867075385, 'EX_cpd11590_e0': 2.3732666588497296e-13, 'EX_cpd15603_e0': 4.252492417730851, 'EX_cpd15604_e0': 40.2833892412052, 'EX_cpd00048_e0': 0.7835210433537694, 'EX_cpd11584_e0': 9.500799349340848, 'EX_cpd00007_e0': 1000.0, 'EX_cpd00794_e0': 37.81804551562641, 'EX_cpd00276_e0': 509.8298655947992, 'EX_cpd00058_e0': 0.7835210433537693}}, 'GCF_001424595.1.RAST.mdl': {'media': {'EX_cpd00268_e0': 2.3719133207623835, 'EX_cpd00254_e0': 0.8740492949874437, 'EX_cpd11591_e0': 16.415431495585818, 'EX_cpd00080_e0': 152.75953101004956, 'EX_cpd00099_e0': 0.8740492949874437, 'EX_cpd00034_e0': 0.8740492949874439, 'EX_cpd10516_e0': 0.8740492949874439, 'EX_cpd00307_e0': 955.7529952057951, 'EX_cpd00644_e0': 1.7480985899748283, 'EX_cpd15606_e0': 15.23504999051256, 'EX_cpd00205_e0': 0.8740492949874439, 'EX_cpd00793_e0': 0.874049294987444, 'EX_cpd00076_e0': 806.8411854604061, 'EX_cpd00063_e0': 0.8740492949874439, 'EX_cpd01914_e0': 4.381869999807622, 'EX_cpd00156_e0': 39.797459492027244, 'EX_cpd15605_e0': 22.786827671866465, 'EX_cpd00118_e0': 0.8740492949874439, 'EX_cpd00129_e0': 116.36764359880272, 'EX_cpd00024_e0': 1000.0, 'EX_cpd00132_e0': 19.183329342361997, 'EX_cpd00104_e0': 0.8740492949874439, 'EX_cpd00149_e0': 0.8740492949874437, 'EX_cpd00030_e0': 0.8740492949874439, 'EX_cpd10515_e0': 2.6221478849623314, 'EX_cpd15604_e0': 44.93774387382038, 'EX_cpd00048_e0': 0.8740492949874439, 'EX_cpd00264_e0': 0.8740492949874439, 'EX_cpd11584_e0': 10.598524498542542, 'EX_cpd00007_e0': 470.7909722685517, 'EX_cpd00794_e0': 42.1875536095993, 'EX_cpd00058_e0': 0.8740492949874439, 'EX_cpd00393_e0': 2.6221478849623314}}, 'GCF_001421805.1.RAST.mdl': {'media': {'EX_cpd01017_e0': 10.700485800130966, 'EX_cpd00254_e0': 0.8610388716360698, 'EX_cpd00023_e0': 1000.0000000000006, 'EX_cpd11591_e0': 20.722057818712795, 'EX_cpd00184_e0': 1.238074477728952, 'EX_cpd00099_e0': 0.8610388716360698, 'EX_cpd00209_e0': 518.2931311128203, 'EX_cpd00034_e0': 0.8610388716360696, 'EX_cpd00071_e0': 624.8422824857352, 'EX_cpd15606_e0': 14.147233920733749, 'EX_cpd00164_e0': 1.9516530398672764e-12, 'EX_cpd00205_e0': 0.8610388716360696, 'EX_cpd00793_e0': 0.8610388716360696, 'EX_cpd00076_e0': 41.55958224028566, 'EX_cpd00027_e0': 15.116361530625882, 'EX_cpd00063_e0': 0.8610388716360696, 'EX_cpd00028_e0': 0.8610388716360697, 'EX_cpd15605_e0': 22.44764053843362, 'EX_cpd11581_e0': 18.897781104448775, 'EX_cpd00009_e0': 150.48567050722428, 'EX_cpd00149_e0': 0.8610388716360698, 'EX_cpd00030_e0': 0.8610388716360696, 'EX_cpd00100_e0': 151.73851508857973, 'EX_cpd10515_e0': 2.583116614908209, 'EX_cpd00277_e0': 11.263670469805884, 'EX_cpd00048_e0': 10.886634863713224, 'EX_cpd00154_e0': 999.9999999999999, 'EX_cpd11584_e0': 10.440763041131916, 'EX_cpd00007_e0': 160.21062780641898, 'EX_cpd00058_e0': 0.8610388716360697}}}" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "579965d5-f940-49ca-92dc-0a69ee386560", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "GCF_001426165.1.RAST.mdl\n", + "GCF_001423785.1.RAST.mdl\n", + "GCF_001422185.1.RAST.mdl\n", + "GCF_001421235.1_Leaf202.fna_genome.assembly.RAST.mdl\n", + "GCF_001423565.1_Leaf145.fna_genome.assembly.RAST.mdl\n" + ] + } + ], + "source": [ + "for mem in MSmodels:\n", + " if mem.id not in members_minimal_media_new:\n", + " print(mem.id)" + ] + }, + { + "cell_type": "code", + "execution_count": 13, + "id": "00013c7a-347d-4aac-8ac1-3a1f5f11dd9c", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "0.0" + ] + }, + "execution_count": 13, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "GCF_001423785.slim_optimize()" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "9fa10b90-7e5f-4610-b661-499d98a7394f", + "metadata": { + "scrolled": true, + "tags": [] + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "The minimal flux media consists of 36 compounds and a 7343.721316392746 total influx, with a growth value of 74.91573984806648\n", + "The minimal flux media consists of 29 compounds and a 3794.1840181378557 total influx, with a growth value of 129.4194256998054\n", + "The minimal flux media consists of 35 compounds and a 4981.8759327314465 total influx, with a growth value of 117.76802046332759\n", + "The minimal flux media consists of 42 compounds and a 3428.0775623865593 total influx, with a growth value of 144.24477571345977\n", + "The minimal flux media consists of 38 compounds and a 3583.957699501794 total influx, with a growth value of 117.78150278259105\n", + "The minimal flux media consists of 33 compounds and a 3739.6371153286914 total influx, with a growth value of 131.37497216084498\n", + "The minimal media of all members:\n", + "{'GCF_001423665.1.RAST.mdl': {'media': {'EX_cpd00239_e0': 2.7051368819757426, 'EX_cpd15606_e0': 8.189269039362008, 'EX_cpd15604_e0': 25.62546179106636, 'EX_cpd00029_e0': 451.7288820176295, 'EX_cpd00058_e0': 0.49842103500121876, 'EX_cpd11591_e0': 11.859528514023935, 'EX_cpd00034_e0': 0.49842103500121876, 'EX_cpd10516_e0': 0.49842103500121876, 'EX_cpd10515_e0': 0.9968420700024376, 'EX_cpd00118_e0': 0.9968420700024376, 'EX_cpd00080_e0': 457.9389385301861, 'EX_cpd00048_e0': 0.4984210350012188, 'EX_cpd00104_e0': 0.49842103500121876, 'EX_cpd00063_e0': 0.4984210350012188, 'EX_cpd11640_e0': 182.93388812130894, 'EX_cpd00149_e0': 0.4984210350012187, 'EX_cpd00156_e0': 23.69108948166615, 'EX_cpd00309_e0': 12.50895138600171, 'EX_cpd00030_e0': 0.4984210350012188, 'EX_cpd00276_e0': 131.85106546642294, 'EX_cpd00027_e0': 1000.0, 'EX_cpd00205_e0': 0.49842103500121876, 'EX_cpd00071_e0': 999.9999999999999, 'EX_cpd15605_e0': 12.994043125186952, 'EX_cpd00028_e0': 0.49842103500121876, 'EX_cpd00001_e0': 1000.0, 'EX_cpd11584_e0': 6.0437409884590485, 'EX_cpd00138_e0': 1000.0000000000002, 'EX_cpd00099_e0': 0.4984210350012188, 'EX_cpd00007_e0': 999.9999999999998, 'EX_cpd00132_e0': 10.939171189110876, 'EX_cpd00254_e0': 0.4984210350012187, 'EX_cpd00092_e0': 5.537142336059069, 'EX_cpd00794_e0': 24.057183336058813, 'EX_cpd00129_e0': 966.6446665932066, 'EX_cpd00793_e0': 0.49842103500121887}}, 'GCF_001421805.1.RAST.mdl': {'media': {'EX_cpd00100_e0': 151.73851508857996, 'EX_cpd00076_e0': 41.559582240287384, 'EX_cpd00009_e0': 150.48567050722582, 'EX_cpd15606_e0': 14.147233920733761, 'EX_cpd00058_e0': 0.8610388716360706, 'EX_cpd00154_e0': 999.9999999999999, 'EX_cpd11591_e0': 20.72205781871271, 'EX_cpd00034_e0': 0.8610388716360706, 'EX_cpd10515_e0': 2.583116614908212, 'EX_cpd00023_e0': 999.9999999999926, 'EX_cpd00048_e0': 10.886634863713246, 'EX_cpd00063_e0': 0.8610388716360706, 'EX_cpd01017_e0': 10.700485800130913, 'EX_cpd00149_e0': 0.8610388716360706, 'EX_cpd00030_e0': 0.8610388716360706, 'EX_cpd11581_e0': 18.897781104448793, 'EX_cpd00205_e0': 0.8610388716360704, 'EX_cpd00027_e0': 15.116361530624998, 'EX_cpd00071_e0': 624.8422824858121, 'EX_cpd15605_e0': 22.447640538433642, 'EX_cpd00028_e0': 0.8610388716360706, 'EX_cpd00277_e0': 11.263670469805904, 'EX_cpd11584_e0': 10.440763041131925, 'EX_cpd00099_e0': 0.8610388716360705, 'EX_cpd00209_e0': 518.2931311127984, 'EX_cpd00007_e0': 160.21062780642515, 'EX_cpd00254_e0': 0.8610388716360705, 'EX_cpd00184_e0': 1.238074477728986, 'EX_cpd00793_e0': 0.8610388716360705}}, 'GCF_001423105.1.RAST.mdl': {'media': {'EX_cpd15603_e0': 4.252492417730891, 'EX_cpd00047_e0': 990.5977474797548, 'EX_cpd00363_e0': 48.3133341092004, 'EX_cpd15606_e0': 12.873583118356967, 'EX_cpd15604_e0': 40.283389241205576, 'EX_cpd00644_e0': 1.5670420867074042, 'EX_cpd01914_e0': 18.3662908350526, 'EX_cpd00058_e0': 0.7835210433537764, 'EX_cpd11591_e0': 0.27696356726061616, 'EX_cpd11587_e0': 5.525275083199947e-27, 'EX_cpd00307_e0': 8.704423039322844, 'EX_cpd00034_e0': 0.7835210433537764, 'EX_cpd10516_e0': 0.7835210433537764, 'EX_cpd10515_e0': 1.567042086707553, 'EX_cpd00080_e0': 136.93770798241374, 'EX_cpd00048_e0': 0.7835210433537766, 'EX_cpd00104_e0': 0.7835210433537764, 'EX_cpd00063_e0': 0.7835210433537766, 'EX_cpd00149_e0': 0.7835210433537763, 'EX_cpd00156_e0': 35.67550155677522, 'EX_cpd00030_e0': 0.7835210433537766, 'EX_cpd00276_e0': 509.8298655949868, 'EX_cpd00205_e0': 0.7835210433537764, 'EX_cpd00071_e0': 1000.0, 'EX_cpd15605_e0': 20.426718601083017, 'EX_cpd00028_e0': 0.7835210433537764, 'EX_cpd11584_e0': 9.500799349340937, 'EX_cpd00099_e0': 0.7835210433537763, 'EX_cpd00007_e0': 1000.0, 'EX_cpd00132_e0': 17.196446822307095, 'EX_cpd00254_e0': 0.7835210433537763, 'EX_cpd00794_e0': 37.81804551562676, 'EX_cpd00129_e0': 483.2123109213441, 'EX_cpd00082_e0': 594.2904548426691, 'EX_cpd00793_e0': 0.7835210433537764}}, 'GCF_001421425.1.RAST.mdl': {'media': {'EX_cpd00033_e0': 106.94745481829504, 'EX_cpd15603_e0': 4.175200115658184, 'EX_cpd00268_e0': 0.5535064062407739, 'EX_cpd00179_e0': 48.615999975802815, 'EX_cpd00065_e0': 7.738459411918382, 'EX_cpd00119_e0': 11.636781070553958, 'EX_cpd00024_e0': 806.804425828703, 'EX_cpd01914_e0': 24.754000896781328, 'EX_cpd00058_e0': 0.9596732348960086, 'EX_cpd00307_e0': 10.661362431688817, 'EX_cpd00034_e0': 0.9596732348960085, 'EX_cpd10516_e0': 0.9596732348960085, 'EX_cpd10515_e0': 1.9193464697920175, 'EX_cpd00118_e0': 0.9596732348960088, 'EX_cpd00080_e0': 1000.0, 'EX_cpd00054_e0': 46.046236159508496, 'EX_cpd00107_e0': 49.33995173914878, 'EX_cpd00063_e0': 0.9596732348960086, 'EX_cpd01080_e0': 29.51900787876525, 'EX_cpd01017_e0': 0.959673234896009, 'EX_cpd00149_e0': 0.9596732348960088, 'EX_cpd00156_e0': 45.61545938972213, 'EX_cpd00367_e0': 5.410810287522461e-12, 'EX_cpd00069_e0': 15.767838350600613, 'EX_cpd00264_e0': 0.9596732348960086, 'EX_cpd00030_e0': 0.9596732348960086, 'EX_cpd00355_e0': 1.9193464697919935, 'EX_cpd00066_e0': 25.019079301691015, 'EX_cpd00205_e0': 0.9596732348960088, 'EX_cpd00028_e0': 0.9596732348960086, 'EX_cpd00099_e0': 0.9596732348960085, 'EX_cpd00209_e0': 207.53494202663975, 'EX_cpd00051_e0': 27.46280332650734, 'EX_cpd00007_e0': 258.5884620563635, 'EX_cpd00311_e0': 12.55395480116064, 'EX_cpd00254_e0': 0.9596732348960085, 'EX_cpd00128_e0': 21.127848198427326, 'EX_cpd00162_e0': 521.1845679303979, 'EX_cpd00136_e0': 0.9596732348960132, 'EX_cpd00082_e0': 82.23114358026714, 'EX_cpd00793_e0': 0.9596732348960088, 'EX_cpd00039_e0': 45.96528522868814}}, 'GCF_001421165.1.RAST.mdl': {'media': {'EX_cpd15603_e0': 4.255765733506098e-12, 'EX_cpd00137_e0': 377.8837260434886, 'EX_cpd00047_e0': 990.5966710910222, 'EX_cpd00239_e0': 104.25297925159371, 'EX_cpd11590_e0': 14.899024935702542, 'EX_cpd15606_e0': 13.658667654395698, 'EX_cpd15604_e0': 40.288000964427255, 'EX_cpd00644_e0': 1.5672214848296087, 'EX_cpd00058_e0': 0.783610742414813, 'EX_cpd00158_e0': 477.80085362365196, 'EX_cpd11591_e0': 3.7463637837793966, 'EX_cpd00034_e0': 0.783610742414813, 'EX_cpd10516_e0': 0.783610742414813, 'EX_cpd10515_e0': 1.5672214848296258, 'EX_cpd00118_e0': 0.7836107424148098, 'EX_cpd00080_e0': 136.95338488597451, 'EX_cpd00048_e0': 0.7836107424148129, 'EX_cpd00104_e0': 0.783610742414813, 'EX_cpd00063_e0': 0.7836107424148129, 'EX_cpd11640_e0': 94.42071340316961, 'EX_cpd00149_e0': 0.783610742414813, 'EX_cpd00156_e0': 35.679585759769886, 'EX_cpd00264_e0': 0.7836107424148162, 'EX_cpd00030_e0': 0.7836107424148129, 'EX_cpd00081_e0': 100.00000000000001, 'EX_cpd00276_e0': 32.89488285944205, 'EX_cpd00205_e0': 0.783610742414813, 'EX_cpd15605_e0': 20.429057092810993, 'EX_cpd00028_e0': 0.783610742414813, 'EX_cpd11584_e0': 9.501887019912086, 'EX_cpd00099_e0': 0.7836107424148129, 'EX_cpd00007_e0': 553.5262483408665, 'EX_cpd00132_e0': 17.19841550604088, 'EX_cpd00254_e0': 0.783610742414813, 'EX_cpd00092_e0': 8.705419539135448, 'EX_cpd00794_e0': 37.822375001352455, 'EX_cpd00129_e0': 498.81083863937044, 'EX_cpd00793_e0': 0.783610742414813}}, 'GCF_001424595.1.RAST.mdl': {'media': {'EX_cpd00076_e0': 806.8411854605561, 'EX_cpd00268_e0': 2.371913320762337, 'EX_cpd00024_e0': 1000.0, 'EX_cpd15606_e0': 15.235049990512529, 'EX_cpd15604_e0': 44.937743873820224, 'EX_cpd00644_e0': 1.7480985899748254, 'EX_cpd01914_e0': 4.381869999813214, 'EX_cpd00058_e0': 0.8740492949874408, 'EX_cpd11591_e0': 16.41543149558024, 'EX_cpd00307_e0': 955.752995205986, 'EX_cpd00034_e0': 0.8740492949874408, 'EX_cpd10516_e0': 0.8740492949874408, 'EX_cpd10515_e0': 2.6221478849623217, 'EX_cpd00118_e0': 0.8740492949874408, 'EX_cpd00080_e0': 152.75953101006746, 'EX_cpd00048_e0': 0.8740492949874407, 'EX_cpd00104_e0': 0.8740492949874408, 'EX_cpd00063_e0': 0.8740492949874407, 'EX_cpd00149_e0': 0.8740492949874406, 'EX_cpd00156_e0': 39.797459492027095, 'EX_cpd00264_e0': 0.8740492949874408, 'EX_cpd00030_e0': 0.8740492949874407, 'EX_cpd00205_e0': 0.8740492949874408, 'EX_cpd15605_e0': 22.786827671866384, 'EX_cpd11584_e0': 10.598524498542504, 'EX_cpd00099_e0': 0.8740492949874406, 'EX_cpd00007_e0': 470.79097226857573, 'EX_cpd00393_e0': 2.622147884962322, 'EX_cpd00132_e0': 19.183329342361926, 'EX_cpd00254_e0': 0.8740492949874406, 'EX_cpd00794_e0': 42.18755360959915, 'EX_cpd00129_e0': 116.36764359889771, 'EX_cpd00793_e0': 0.8740492949874408}}}\n", + "\n", + "Examining the 55 model pairs\n", + "cpd11416_c0 bio1: 0.5 cpd11416_c1 + 0.5 cpd11416_c2 --> cpd11416_c0;\tcpd11416_c0 SK_cpd11416_c0: cpd11416_c0 <=> ;\tMainProcess~~0\t['GCF_001423665.1.RAST.mdl', 'GCF_001423785.1.RAST.mdl']\n", + "\tEnvironment\tR2A_M\tThe GCF_001423785.1.RAST.mdl model input does not yield an operational model, and will therefore be gapfilled.\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "C:\\Users\\Andrew Freiburger\\AppData\\Local\\Programs\\Python\\Python39\\lib\\site-packages\\sigfig\\sigfig.py:586: UserWarning: warning: 5 significant figures requested from number with only 1 significant figures\n", + " warn(\"warning: %d significant figures requested from number with only %d significant figures\" % (given['sigfigs'], len(num.map)))\n" + ] + }, + { + "ename": "AttributeError", + "evalue": "'NoneType' object has no attribute 'keys'", + "output_type": "error", + "traceback": [ + "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[1;31mAttributeError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[1;32mIn[6], line 3\u001b[0m\n\u001b[0;32m 1\u001b[0m get_ipython()\u001b[38;5;241m.\u001b[39mrun_line_magic(\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mrun\u001b[39m\u001b[38;5;124m'\u001b[39m, \u001b[38;5;124m'\u001b[39m\u001b[38;5;124m../../../modelseedpy/community/commscores.py\u001b[39m\u001b[38;5;124m'\u001b[39m)\n\u001b[0;32m 2\u001b[0m \u001b[38;5;66;03m# from modelseedpy import MSCompatibility\u001b[39;00m\n\u001b[1;32m----> 3\u001b[0m df, mets \u001b[38;5;241m=\u001b[39m \u001b[43mCommScores\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mkbase_output\u001b[49m\u001b[43m(\u001b[49m\u001b[43mMSmodels\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43menvironments\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mkbase_api\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mget_from_ws\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43m154981/21/1\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m)\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mkbase_obj\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mkbase_api\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mannotated_genomes\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43;01mTrue\u001b[39;49;00m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mskip_bad_media\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43;01mTrue\u001b[39;49;00m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mprint_progress\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43;01mTrue\u001b[39;49;00m\u001b[43m)\u001b[49m \u001b[38;5;66;03m#, pool_size=cpu_count()/2)[0])\u001b[39;00m\n\u001b[0;32m 5\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mpprint\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m pprint\n\u001b[0;32m 6\u001b[0m display(df)\n", + "File \u001b[1;32m~\\Documents\\Argonne\\ModelSEED\\ModelSEEDpy\\modelseedpy\\community\\commscores.py:449\u001b[0m, in \u001b[0;36mCommScores.kbase_output\u001b[1;34m(all_models, pairs, mem_media, pair_limit, exclude_pairs, kbase_obj, annotated_genomes, see_media, environments, pool_size, cip_score, costless, skip_bad_media, anme_comm, print_progress)\u001b[0m\n\u001b[0;32m 447\u001b[0m series \u001b[38;5;241m=\u001b[39m chain\u001b[38;5;241m.\u001b[39mfrom_iterable([ele[\u001b[38;5;241m0\u001b[39m] \u001b[38;5;28;01mfor\u001b[39;00m ele \u001b[38;5;129;01min\u001b[39;00m output])\n\u001b[0;32m 448\u001b[0m mets \u001b[38;5;241m=\u001b[39m chain\u001b[38;5;241m.\u001b[39mfrom_iterable([ele[\u001b[38;5;241m1\u001b[39m] \u001b[38;5;28;01mfor\u001b[39;00m ele \u001b[38;5;129;01min\u001b[39;00m output])\n\u001b[1;32m--> 449\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m: series, mets \u001b[38;5;241m=\u001b[39m \u001b[43mCommScores\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mcalculate_scores\u001b[49m\u001b[43m(\u001b[49m\u001b[43mpairs\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mmodels_media\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43menvironments\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mannotated_genomes\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mlazy_load\u001b[49m\u001b[43m,\u001b[49m\n\u001b[0;32m 450\u001b[0m \u001b[43m \u001b[49m\u001b[43mkbase_obj\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mcip_score\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mcostless\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mskip_bad_media\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43manme_comm\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mprint_progress\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m 451\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m concat(series, axis\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m1\u001b[39m)\u001b[38;5;241m.\u001b[39mT, mets\n", + "File \u001b[1;32m~\\Documents\\Argonne\\ModelSEED\\ModelSEEDpy\\modelseedpy\\community\\commscores.py:331\u001b[0m, in \u001b[0;36mCommScores.calculate_scores\u001b[1;34m(pairs, models_media, environments, annotated_genomes, lazy_load, kbase_obj, cip_score, costless, skip_bad_media, anme_comm, print_progress)\u001b[0m\n\u001b[0;32m 329\u001b[0m kbase_dic\u001b[38;5;241m.\u001b[39mupdate({\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mmedia\u001b[39m\u001b[38;5;124m\"\u001b[39m: environName, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mmodel1 growth\u001b[39m\u001b[38;5;124m\"\u001b[39m: g1, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mmodel2 growth\u001b[39m\u001b[38;5;124m\"\u001b[39m: g2, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mcommunity growth\u001b[39m\u001b[38;5;124m\"\u001b[39m: comm})\n\u001b[0;32m 330\u001b[0m \u001b[38;5;66;03m# define the MRO content\u001b[39;00m\n\u001b[1;32m--> 331\u001b[0m mro_values \u001b[38;5;241m=\u001b[39m \u001b[43mCommScores\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mmro\u001b[49m\u001b[43m(\u001b[49m\u001b[43mgrouping\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mmodels_media\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mraw_content\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43;01mTrue\u001b[39;49;00m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43menvironment\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43menviron\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m 332\u001b[0m kbase_dic\u001b[38;5;241m.\u001b[39mupdate({\u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mMRO_model\u001b[39m\u001b[38;5;132;01m{\u001b[39;00mmodelIDs\u001b[38;5;241m.\u001b[39mindex(models_string\u001b[38;5;241m.\u001b[39msplit(\u001b[38;5;124m'\u001b[39m\u001b[38;5;124m--\u001b[39m\u001b[38;5;124m'\u001b[39m)[\u001b[38;5;241m0\u001b[39m])\u001b[38;5;241m+\u001b[39m\u001b[38;5;241m1\u001b[39m\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m\"\u001b[39m:\n\u001b[0;32m 333\u001b[0m \u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;132;01m{\u001b[39;00m\u001b[38;5;241m100\u001b[39m\u001b[38;5;241m*\u001b[39m\u001b[38;5;28mlen\u001b[39m(intersection)\u001b[38;5;241m/\u001b[39m\u001b[38;5;28mlen\u001b[39m(memMedia)\u001b[38;5;132;01m:\u001b[39;00m\u001b[38;5;124m.3f\u001b[39m\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m% (\u001b[39m\u001b[38;5;132;01m{\u001b[39;00m\u001b[38;5;28mlen\u001b[39m(intersection)\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m/\u001b[39m\u001b[38;5;132;01m{\u001b[39;00m\u001b[38;5;28mlen\u001b[39m(memMedia)\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m)\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[0;32m 334\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m models_string, (intersection, memMedia) \u001b[38;5;129;01min\u001b[39;00m mro_values\u001b[38;5;241m.\u001b[39mitems()})\n\u001b[0;32m 335\u001b[0m mets\u001b[38;5;241m.\u001b[39mappend({\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mMRO metabolites\u001b[39m\u001b[38;5;124m\"\u001b[39m: \u001b[38;5;28mlist\u001b[39m(mro_values\u001b[38;5;241m.\u001b[39mvalues())[\u001b[38;5;241m0\u001b[39m][\u001b[38;5;241m0\u001b[39m]})\n", + "File \u001b[1;32m~\\Documents\\Argonne\\ModelSEED\\ModelSEEDpy\\modelseedpy\\community\\commscores.py:468\u001b[0m, in \u001b[0;36mCommScores.mro\u001b[1;34m(member_models, mem_media, min_growth, media_dict, raw_content, environment, skip_bad_media, printing, compatibilized)\u001b[0m\n\u001b[0;32m 466\u001b[0m mro_values \u001b[38;5;241m=\u001b[39m {}\n\u001b[0;32m 467\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m model1, model2 \u001b[38;5;129;01min\u001b[39;00m combinations(member_models, \u001b[38;5;241m2\u001b[39m):\n\u001b[1;32m--> 468\u001b[0m intersection \u001b[38;5;241m=\u001b[39m \u001b[38;5;28mset\u001b[39m(mem_media[model1\u001b[38;5;241m.\u001b[39mid][\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mmedia\u001b[39m\u001b[38;5;124m\"\u001b[39m]\u001b[38;5;241m.\u001b[39mkeys()) \u001b[38;5;241m&\u001b[39m \u001b[38;5;28mset\u001b[39m(\u001b[43mmem_media\u001b[49m\u001b[43m[\u001b[49m\u001b[43mmodel2\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mid\u001b[49m\u001b[43m]\u001b[49m\u001b[43m[\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mmedia\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m]\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mkeys\u001b[49m())\n\u001b[0;32m 469\u001b[0m inter \u001b[38;5;241m=\u001b[39m [ex\u001b[38;5;241m.\u001b[39mreplace(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mEX_\u001b[39m\u001b[38;5;124m\"\u001b[39m, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m\"\u001b[39m)\u001b[38;5;241m.\u001b[39mreplace(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m_e0\u001b[39m\u001b[38;5;124m\"\u001b[39m, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m\"\u001b[39m) \u001b[38;5;28;01mfor\u001b[39;00m ex \u001b[38;5;129;01min\u001b[39;00m intersection]\n\u001b[0;32m 470\u001b[0m m1_media \u001b[38;5;241m=\u001b[39m mem_media[model1\u001b[38;5;241m.\u001b[39mid][\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mmedia\u001b[39m\u001b[38;5;124m\"\u001b[39m] ; m2_media \u001b[38;5;241m=\u001b[39m mem_media[model2\u001b[38;5;241m.\u001b[39mid][\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mmedia\u001b[39m\u001b[38;5;124m\"\u001b[39m]\n", + "\u001b[1;31mAttributeError\u001b[0m: 'NoneType' object has no attribute 'keys'" + ] + } + ], + "source": [ + "%run ../../../modelseedpy/community/commscores.py\n", + "# from modelseedpy import MSCompatibility\n", + "df, mets = CommScores.report_generation(MSmodels, environments=kbase_api.get_from_ws(\"154981/21/1\"), kbase_obj=kbase_api, annotated_genomes=True, skip_bad_media=True, print_progress=True) #, pool_size=cpu_count()/2)[0])\n", + "\n", + "from pprint import pprint\n", + "display(df)\n", + "df.to_csv(\"commscores_report.csv\")\n", + "\n", + "%run ../../../modelseedpy/core/report.py\n", + "report = commscores_report(df, mets, msdb_path=r\"C:\\Users\\Andrew Freiburger\\Documents\\Argonne\\ModelSEED\\ModelSEEDDatabase\")" + ] + }, + { + "cell_type": "code", + "execution_count": 12, + "id": "976a50b1-68cb-4967-bc54-c0fc201d8002", + "metadata": { + "scrolled": true, + "tags": [] + }, + "outputs": [], + "source": [ + "%run ../../../modelseedpy/core/report.py\n", + "report = commscores_report(df, mets, msdb_path=r\"C:\\Users\\Andrew Freiburger\\Documents\\Argonne\\ModelSEED\\ModelSEEDDatabase\")" + ] + }, + { + "cell_type": "code", + "execution_count": 13, + "id": "c4aeab1e-a220-4cd7-bdcf-4991e89b4b3b", + "metadata": {}, + "outputs": [], + "source": [ + "GCF_001421235_genome = kbase_api.get_from_ws(GCF_001421235.genome_ref)\n", + "GCF_001423105_genome = kbase_api.get_from_ws(GCF_001423105.genome_ref)" + ] + }, + { + "cell_type": "code", + "execution_count": 14, + "id": "8ae05ee6-b982-40ce-a9d4-a20e3c6a77d7", + "metadata": { + "scrolled": true, + "tags": [] + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['4-nitrophenylphosphatase (EC 3.1.3.41)']\n", + "SSO ['SSO:000000383']\n", + "['SSO:000000383']\n", + "RAST [\"16S rRNA (cytidine(1409)-2'-O)-methyltransferase (EC 2.1.1.227)\", \"23S rRNA (cytidine(1920)-2'-O)-methyltransferase (EC 2.1.1.226)\"]\n", + "SSO ['SSO:000000229']\n", + "['SSO:000000229']\n", + "RAST ['NAD kinase (EC 2.7.1.23)']\n", + "SSO ['SSO:000005159']\n", + "['SSO:000005159']\n", + "RAST ['DNA repair protein RecN']\n", + "SSO ['SSO:000002109']\n", + "['SSO:000002109']\n", + "RAST ['CTP synthase (EC 6.3.4.2)']\n", + "SSO ['SSO:000001378']\n", + "['SSO:000001378']\n", + "RAST ['ADP-ribose pyrophosphatase (EC 3.6.1.13)']\n", + "SSO ['SSO:000000533', 'SSO:000020400']\n", + "['SSO:000000533', 'SSO:000020400']\n", + "RAST ['Site-specific tyrosine recombinase XerD']\n", + "SSO ['SSO:000007588']\n", + "['SSO:000007588']\n", + "RAST ['ParA-like protein']\n", + "SSO ['SSO:000021243']\n", + "['SSO:000021243']\n", + "RAST ['Segregation and condensation protein A']\n", + "SSO ['SSO:000007380']\n", + "['SSO:000007380']\n", + "RAST ['Segregation and condensation protein B']\n", + "SSO ['SSO:000007381']\n", + "['SSO:000007381']\n", + "RAST ['LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22)']\n", + "SSO ['SSO:000036578']\n", + "['SSO:000036578']\n", + "RAST ['Arogenate dehydrogenase (EC 1.3.1.43)']\n", + "SSO ['SSO:000001062', 'SSO:000006305']\n", + "['SSO:000001062', 'SSO:000006305']\n", + "RAST ['Cytidylate kinase (EC 2.7.4.25)']\n", + "SSO ['SSO:000001874', 'SSO:000043254']\n", + "['SSO:000001874', 'SSO:000043254']\n", + "RAST ['GTP-binding protein EngA']\n", + "SSO ['SSO:000002993']\n", + "['SSO:000002993']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, HxlR family']\n", + "SSO ['SSO:000025929']\n", + "['SSO:000025929']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Monoamine oxidase (1.4.3.4)']\n", + "SSO ['SSO:000020024', 'SSO:000038656']\n", + "['SSO:000020024', 'SSO:000038656']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00949336: hypothetical protein']\n", + "RAST ['Uncharacterized protein YehL']\n", + "SSO ['SSO:000028258']\n", + "['SSO:000028258']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Mg-chelatase subunit ChlD']\n", + "SSO ['SSO:000019652']\n", + "['SSO:000019652']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component system sensor histidine kinase']\n", + "SSO ['SSO:000021767']\n", + "['SSO:000021767']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)']\n", + "SSO ['SSO:000003164', 'SSO:000009137']\n", + "['SSO:000003164', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['DEAD-box ATP-dependent RNA helicase DeaD (= CshA) (EC 3.6.4.13)']\n", + "SSO ['SSO:000012725', 'SSO:000035396']\n", + "['SSO:000012725', 'SSO:000035396']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized amino acid permease, GabP family']\n", + "SSO ['SSO:000027035']\n", + "['SSO:000027035']\n", + "RAST ['ATP-dependent DNA helicase RecQ']\n", + "SSO ['SSO:000000584']\n", + "['SSO:000000584']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000012725']\n", + "['SSO:000009137', 'SSO:000012725']\n", + "RAST ['Thioredoxin reductase (EC 1.8.1.9)']\n", + "SSO ['SSO:000008043']\n", + "['SSO:000008043']\n", + "RAST ['probable sulfite oxidase']\n", + "SSO ['SSO:000022589']\n", + "['SSO:000022589']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Lanthionine biosynthesis protein LanL']\n", + "SSO ['SSO:000018846']\n", + "['SSO:000018846']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Superfamily I DNA and RNA helicases and helicase subunits']\n", + "SSO ['SSO:000025296']\n", + "['SSO:000025296']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Protein containing domains DUF404, DUF407']\n", + "SSO ['SSO:000022758']\n", + "['SSO:000022758']\n", + "RAST ['Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)']\n", + "SSO ['SSO:000001084']\n", + "['SSO:000001084']\n", + "RAST ['Acylamino-acid-releasing enzyme']\n", + "SSO ['SSO:000000805']\n", + "['SSO:000000805']\n", + "RAST ['FIG00512517: hypothetical protein']\n", + "RAST ['FIG00511461: hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['CHAP domain containing protein']\n", + "SSO ['SSO:000009137', 'SSO:000011545']\n", + "['SSO:000009137', 'SSO:000011545']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000013242']\n", + "['SSO:000009137', 'SSO:000013242']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ATP-dependent DNA ligase (EC 6.5.1.1) LigC']\n", + "SSO ['SSO:000000587', 'SSO:000000588']\n", + "['SSO:000000587', 'SSO:000000588']\n", + "RAST ['ATP-dependent DNA ligase (EC 6.5.1.1)']\n", + "SSO ['SSO:000000587', 'SSO:000009137']\n", + "['SSO:000000587', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000020586']\n", + "['SSO:000009137', 'SSO:000020586']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)']\n", + "SSO ['SSO:000004543']\n", + "['SSO:000004543']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glutaryl-CoA dehydrogenase (EC 1.3.8.6)']\n", + "SSO ['SSO:000010245', 'SSO:000011062']\n", + "['SSO:000010245', 'SSO:000011062']\n", + "RAST ['Acetyl-CoA acetyltransferase (EC 2.3.1.9)', '3-ketoacyl-CoA thiolase (EC 2.3.1.16)']\n", + "SSO ['SSO:000042503']\n", + "['SSO:000042503']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['Nodulation protein N-related dehydratase']\n", + "SSO ['SSO:000037233']\n", + "['SSO:000037233']\n", + "RAST ['Transcription-repair coupling factor']\n", + "SSO ['SSO:000008179', 'SSO:000009137']\n", + "['SSO:000008179', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017805']\n", + "['SSO:000009137', 'SSO:000017805']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Zinc-type alcohol dehydrogenase-like protein']\n", + "SSO ['SSO:000041756']\n", + "['SSO:000041756']\n", + "RAST ['Transcriptional regulator, MarR family']\n", + "SSO ['SSO:000025935']\n", + "['SSO:000025935']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative secreted protein']\n", + "SSO ['SSO:000017578', 'SSO:000030757']\n", + "['SSO:000017578', 'SSO:000030757']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Transcriptional regulator, LysR family']\n", + "SSO ['SSO:000025403']\n", + "['SSO:000025403']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cytoplasmic membrane protein FsxA']\n", + "SSO ['SSO:000001963', 'SSO:000009137']\n", + "['SSO:000001963', 'SSO:000009137']\n", + "RAST ['alpha-galactosidase (EC 3.2.1.22)']\n", + "SSO ['SSO:000000919']\n", + "['SSO:000000919']\n", + "RAST ['Xanthine/uracil/thiamine/ascorbate permease family protein']\n", + "SSO ['SSO:000029042']\n", + "['SSO:000029042']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phospholipid-binding protein']\n", + "SSO ['SSO:000021688']\n", + "['SSO:000021688']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Potassium channel beta chain']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Oxidoreductase']\n", + "SSO ['SSO:000020957']\n", + "['SSO:000020957']\n", + "RAST ['Uncharacterized oxidoreductase YrpG']\n", + "SSO ['SSO:000027397']\n", + "['SSO:000027397']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000013194']\n", + "['SSO:000009137', 'SSO:000013194']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['NTP pyrophosphohydrolase']\n", + "SSO ['SSO:000020390']\n", + "['SSO:000020390']\n", + "RAST ['Periplasmic serine protease']\n", + "SSO ['SSO:000021445']\n", + "['SSO:000021445']\n", + "RAST ['Glycogen accumulation regulator GarA']\n", + "SSO ['SSO:000013635', 'SSO:000035753']\n", + "['SSO:000013635', 'SSO:000035753']\n", + "RAST ['transcriptional regulator, MerR family']\n", + "SSO ['SSO:000025938']\n", + "['SSO:000025938']\n", + "RAST ['FIG01121957: hypothetical protein']\n", + "RAST ['ParA-like protein']\n", + "SSO ['SSO:000021243']\n", + "['SSO:000021243']\n", + "RAST ['Pyruvate carboxylase (EC 6.4.1.1)']\n", + "SSO ['SSO:000006841']\n", + "['SSO:000006841']\n", + "RAST ['Peptide deformylase (EC 3.5.1.88)']\n", + "SSO ['SSO:000005794']\n", + "['SSO:000005794']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glucokinase (EC 2.7.1.2)']\n", + "SSO ['SSO:000003097']\n", + "['SSO:000003097']\n", + "RAST ['Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)']\n", + "SSO ['SSO:000000796', 'SSO:000009471']\n", + "['SSO:000000796', 'SSO:000009471']\n", + "RAST ['2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54)']\n", + "SSO ['SSO:000000171']\n", + "['SSO:000000171']\n", + "RAST ['Probable serine/threonine-protein kinase pknL (EC 2.7.11.1)']\n", + "SSO ['SSO:000022577']\n", + "['SSO:000022577']\n", + "RAST ['Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)']\n", + "SSO ['SSO:000004784']\n", + "['SSO:000004784']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000012746']\n", + "['SSO:000009137', 'SSO:000012746']\n", + "RAST ['Geranylgeranyl diphosphate synthase (EC 2.5.1.29)']\n", + "SSO ['SSO:000003089']\n", + "['SSO:000003089']\n", + "RAST ['FIG017342: transmembrane protein']\n", + "SSO ['SSO:000016277']\n", + "['SSO:000016277']\n", + "RAST ['Transcriptional regulator MraZ']\n", + "SSO ['SSO:000039602']\n", + "['SSO:000039602']\n", + "RAST ['16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199)']\n", + "SSO ['SSO:000033922']\n", + "['SSO:000033922']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)']\n", + "SSO ['SSO:000001467', 'SSO:000031325']\n", + "['SSO:000001467', 'SSO:000031325']\n", + "RAST ['UDP-N-acetylmuramoy-dipeptide--L-lysine ligase (EC 6.3.2.7)']\n", + "SSO ['SSO:000044269']\n", + "['SSO:000044269']\n", + "RAST ['UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)']\n", + "SSO ['SSO:000008630']\n", + "['SSO:000008630']\n", + "RAST ['Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)']\n", + "SSO ['SSO:000005947']\n", + "['SSO:000005947']\n", + "RAST ['UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase (EC 6.3.2.9)']\n", + "SSO ['SSO:000039893']\n", + "['SSO:000039893']\n", + "RAST ['Peptidoglycan glycosyltransferase FtsW (EC 2.4.1.129)']\n", + "SSO ['SSO:000037529']\n", + "['SSO:000037529']\n", + "RAST ['UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)']\n", + "SSO ['SSO:000008622']\n", + "['SSO:000008622']\n", + "RAST ['UDP-N-acetylmuramate--glycine ligase']\n", + "SSO ['SSO:000008627', 'SSO:000039892']\n", + "['SSO:000008627', 'SSO:000039892']\n", + "RAST ['Cell division protein FtsQ']\n", + "SSO ['SSO:000001469']\n", + "['SSO:000001469']\n", + "RAST ['Cell division protein FtsZ']\n", + "SSO ['SSO:000001472']\n", + "['SSO:000001472']\n", + "RAST ['Pyridoxal phosphate-containing protein YggS']\n", + "RAST ['SepF, FtsZ-interacting protein related to cell division']\n", + "SSO ['SSO:000024537']\n", + "['SSO:000024537']\n", + "RAST ['Cell division integral membrane protein, YggT and half-length relatives']\n", + "SSO ['SSO:000001462']\n", + "['SSO:000001462']\n", + "RAST ['Cell division initiation protein DivIVA']\n", + "SSO ['SSO:000001461']\n", + "['SSO:000001461']\n", + "RAST ['Lipoprotein signal peptidase (EC 3.4.23.36)']\n", + "SSO ['SSO:000004502']\n", + "['SSO:000004502']\n", + "RAST ['LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23)']\n", + "SSO ['SSO:000036575']\n", + "['SSO:000036575']\n", + "RAST ['DNA polymerase III alpha subunit (EC 2.7.7.7)']\n", + "SSO ['SSO:000002079', 'SSO:000012808']\n", + "['SSO:000002079', 'SSO:000012808']\n", + "RAST ['Histidinol dehydrogenase (EC 1.1.1.23)']\n", + "SSO ['SSO:000003446']\n", + "['SSO:000003446']\n", + "RAST ['Ribonucleotide reductase transcriptional regulator NrdR']\n", + "SSO ['SSO:000007106']\n", + "['SSO:000007106']\n", + "RAST ['Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2)']\n", + "SSO ['SSO:000002311']\n", + "['SSO:000002311']\n", + "RAST [\"CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase\"]\n", + "SSO ['SSO:000012012']\n", + "['SSO:000012012']\n", + "RAST ['Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A']\n", + "SSO ['SSO:000001449', 'SSO:000013154']\n", + "['SSO:000001449', 'SSO:000013154']\n", + "RAST ['Iron-sulfur cluster insertion protein SCO2161']\n", + "SSO ['SSO:000036433', 'SSO:000036434']\n", + "['SSO:000036433', 'SSO:000036434']\n", + "RAST ['Cytochrome c oxidase polypeptide II (EC 1.9.3.1)']\n", + "SSO ['SSO:000001913']\n", + "['SSO:000001913']\n", + "RAST ['Cytochrome c oxidase polypeptide I (EC 1.9.3.1)']\n", + "SSO ['SSO:000001912', 'SSO:000012628']\n", + "['SSO:000001912', 'SSO:000012628']\n", + "RAST ['Cytochrome c oxidase polypeptide IV (EC 1.9.3.1)']\n", + "SSO ['SSO:000001915', 'SSO:000035277']\n", + "['SSO:000001915', 'SSO:000035277']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2)']\n", + "SSO ['SSO:000008679']\n", + "['SSO:000008679']\n", + "RAST ['Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)']\n", + "SSO ['SSO:000008678', 'SSO:000024194']\n", + "['SSO:000008678', 'SSO:000024194']\n", + "RAST ['Ubiquinol-cytochrome C reductase, diheme cytochrome cc subunit']\n", + "SSO ['SSO:000008682', 'SSO:000029482']\n", + "['SSO:000008682', 'SSO:000029482']\n", + "RAST ['Cytochrome c oxidase polypeptide III (EC 1.9.3.1)']\n", + "SSO ['SSO:000001914']\n", + "['SSO:000001914']\n", + "RAST ['Anthranilate phosphoribosyltransferase (EC 2.4.2.18)']\n", + "SSO ['SSO:000000995']\n", + "['SSO:000000995']\n", + "RAST ['Glycerol kinase (EC 2.7.1.30)']\n", + "SSO ['SSO:000003248']\n", + "['SSO:000003248']\n", + "RAST ['Glycerol uptake facilitator protein']\n", + "SSO ['SSO:000003249']\n", + "['SSO:000003249']\n", + "RAST ['Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK']\n", + "SSO ['SSO:000005961']\n", + "['SSO:000005961']\n", + "RAST ['Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL']\n", + "SSO ['SSO:000005960']\n", + "['SSO:000005960']\n", + "RAST ['DHA-specific IIA component', 'Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['UPF0225 protein YchJ']\n", + "SSO ['SSO:000009137', 'SSO:000026583']\n", + "['SSO:000009137', 'SSO:000026583']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Argininosuccinate synthase (EC 6.3.4.5)']\n", + "SSO ['SSO:000001052']\n", + "['SSO:000001052']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017392']\n", + "['SSO:000009137', 'SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000024474']\n", + "['SSO:000009137', 'SSO:000024474']\n", + "RAST ['DNA-binding response regulator, LuxR family']\n", + "RAST ['dolichol-phosphate mannosyltransferase']\n", + "SSO ['SSO:000002378', 'SSO:000017392']\n", + "['SSO:000002378', 'SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Enoyl-[acyl-carrier-protein] reductase (EC 1.3.1.104), FabL-like, predicted']\n", + "SSO ['SSO:000035642']\n", + "['SSO:000035642']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Protein QmcA (possibly involved in integral membrane quality control)']\n", + "SSO ['SSO:000006449']\n", + "['SSO:000006449']\n", + "RAST ['Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)']\n", + "SSO ['SSO:000003262', 'SSO:000009137']\n", + "['SSO:000003262', 'SSO:000009137']\n", + "RAST ['FIG00820327: hypothetical protein']\n", + "SSO ['SSO:000015073']\n", + "['SSO:000015073']\n", + "RAST ['Apolipoprotein N-acyltransferase (EC 2.3.1.-) in lipid-linked oligosaccharide synthesis cluster']\n", + "SSO ['SSO:000001022', 'SSO:000001023']\n", + "['SSO:000001022', 'SSO:000001023']\n", + "RAST ['FIG005666: putative helicase']\n", + "SSO ['SSO:000012725', 'SSO:000014237']\n", + "['SSO:000012725', 'SSO:000014237']\n", + "RAST ['Twin-arginine translocation protein TatC']\n", + "SSO ['SSO:000008425']\n", + "['SSO:000008425']\n", + "RAST ['Twin-arginine translocation protein TatA']\n", + "SSO ['SSO:000008421', 'SSO:000009137']\n", + "['SSO:000008421', 'SSO:000009137']\n", + "RAST ['FIG019733: possible DNA-binding protein']\n", + "SSO ['SSO:000016297']\n", + "['SSO:000016297']\n", + "RAST ['FIG005453: Putative DeoR-family transcriptional regulator']\n", + "SSO ['SSO:000014166']\n", + "['SSO:000014166']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)']\n", + "SSO ['SSO:000002672', 'SSO:000009137']\n", + "['SSO:000002672', 'SSO:000009137']\n", + "RAST ['tRNA (adenine(58)-N(1))-methyltransferase (EC 2.1.1.220)']\n", + "SSO ['SSO:000009323', 'SSO:000009326']\n", + "['SSO:000009323', 'SSO:000009326']\n", + "RAST ['HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1']\n", + "SSO ['SSO:000017519']\n", + "['SSO:000017519']\n", + "RAST ['FIG01121495: hypothetical protein']\n", + "SSO ['SSO:000015856']\n", + "['SSO:000015856']\n", + "RAST ['Uncharacterized protein PA4799']\n", + "SSO ['SSO:000040967']\n", + "['SSO:000040967']\n", + "RAST ['L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC (EC 6.3.1.13)']\n", + "SSO ['SSO:000004135']\n", + "['SSO:000004135']\n", + "RAST ['Undecaprenyl-diphosphatase (EC 3.6.1.27)']\n", + "SSO ['SSO:000008817']\n", + "['SSO:000008817']\n", + "RAST ['YscS-like amidohydrolase']\n", + "SSO ['SSO:000041743']\n", + "['SSO:000041743']\n", + "RAST ['NADPH dependent aldo-keto reductase => YajO']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['NADH dehydrogenase (EC 1.6.99.3)']\n", + "SSO ['SSO:000005203', 'SSO:000037035']\n", + "['SSO:000005203', 'SSO:000037035']\n", + "RAST ['Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6)']\n", + "SSO ['SSO:000008821', 'SSO:000025253']\n", + "['SSO:000008821', 'SSO:000025253']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017392']\n", + "['SSO:000009137', 'SSO:000017392']\n", + "RAST ['CDP-alcohol phosphatidyltransferase family protein']\n", + "SSO ['SSO:000011529']\n", + "['SSO:000011529']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glycerol-3-phosphate cytidylyltransferase (EC 2.7.7.39)']\n", + "SSO ['SSO:000017326']\n", + "['SSO:000017326']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative DNA or RNA helicase of superfamily II']\n", + "SSO ['SSO:000012725', 'SSO:000032218']\n", + "['SSO:000012725', 'SSO:000032218']\n", + "RAST ['DNA polymerase IV (EC 2.7.7.7)']\n", + "SSO ['SSO:000002086']\n", + "['SSO:000002086']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Lysophospholipase L1 and related esterases']\n", + "SSO ['SSO:000019148']\n", + "['SSO:000019148']\n", + "RAST ['D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)']\n", + "SSO ['SSO:000001995']\n", + "['SSO:000001995']\n", + "RAST ['putative rRNA methylase']\n", + "SSO ['SSO:000023830']\n", + "['SSO:000023830']\n", + "RAST ['NAD-dependent protein deacetylase of SIR2 family']\n", + "SSO ['SSO:000005189']\n", + "['SSO:000005189']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glycosyltransferase']\n", + "SSO ['SSO:000017392']\n", + "['SSO:000017392']\n", + "RAST ['Hydrolase']\n", + "SSO ['SSO:000017946']\n", + "['SSO:000017946']\n", + "RAST ['Alpha-amylase (EC 3.2.1.1)', 'Trehalose synthase (EC 5.4.99.16)']\n", + "SSO ['SSO:000042937']\n", + "['SSO:000042937']\n", + "RAST ['DNA polymerase III, epsilon subunit']\n", + "SSO ['SSO:000002084', 'SSO:000012812']\n", + "['SSO:000002084', 'SSO:000012812']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474']\n", + "['SSO:000018474']\n", + "RAST ['Tellurium resistance protein TerD']\n", + "SSO ['SSO:000025516']\n", + "['SSO:000025516']\n", + "RAST ['Tellurium resistance protein TerD']\n", + "SSO ['SSO:000025516']\n", + "['SSO:000025516']\n", + "RAST ['Tellurium resistance protein TerD']\n", + "SSO ['SSO:000025516']\n", + "['SSO:000025516']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000025721']\n", + "['SSO:000009137', 'SSO:000025721']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Tellurium resistance protein TerD']\n", + "SSO ['SSO:000025516']\n", + "['SSO:000025516']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Similar to citrate lyase beta subunit']\n", + "SSO ['SSO:000024727']\n", + "['SSO:000024727']\n", + "RAST ['COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG01127683: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['LSU ribosomal protein L31p, zinc-independent', 'LSU ribosomal protein L31p']\n", + "RAST ['ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['Predicted glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21), Actinobacterial type']\n", + "SSO ['SSO:000006254', 'SSO:000017356']\n", + "['SSO:000006254', 'SSO:000017356']\n", + "RAST ['Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)']\n", + "SSO ['SSO:000003124']\n", + "['SSO:000003124']\n", + "RAST ['Phosphoserine phosphatase (EC 3.1.3.3)']\n", + "SSO ['SSO:000006051']\n", + "['SSO:000006051']\n", + "RAST ['3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), FadG']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion']\n", + "SSO ['SSO:000001944']\n", + "['SSO:000001944']\n", + "RAST ['Bis-ABC ATPase SCO1840']\n", + "SSO ['SSO:000011174']\n", + "['SSO:000011174']\n", + "RAST ['Substrate-specific component BioY of biotin ECF transporter']\n", + "SSO ['SSO:000007763']\n", + "['SSO:000007763']\n", + "RAST ['PaaD-like protein (DUF59) involved in Fe-S cluster assembly']\n", + "SSO ['SSO:000005724']\n", + "['SSO:000005724']\n", + "RAST ['Iron-sulfur cluster assembly ATPase protein SufC']\n", + "SSO ['SSO:000004024']\n", + "['SSO:000004024']\n", + "RAST ['Ferredoxin, 2Fe-2S']\n", + "SSO ['SSO:000002704']\n", + "['SSO:000002704']\n", + "RAST ['Iron-sulfur cluster assembly protein SufD']\n", + "SSO ['SSO:000004026']\n", + "['SSO:000004026']\n", + "RAST ['Iron-sulfur cluster assembly protein SufB']\n", + "SSO ['SSO:000004025']\n", + "['SSO:000004025']\n", + "RAST ['Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA']\n", + "SSO ['SSO:000003359']\n", + "['SSO:000003359']\n", + "RAST ['Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB']\n", + "SSO ['SSO:000003369']\n", + "['SSO:000003369']\n", + "RAST ['Transketolase (EC 2.2.1.1)']\n", + "SSO ['SSO:000008287']\n", + "['SSO:000008287']\n", + "RAST ['Transaldolase (EC 2.2.1.2)']\n", + "SSO ['SSO:000008135']\n", + "['SSO:000008135']\n", + "RAST ['Glucose-6-phosphate isomerase (EC 5.3.1.9)']\n", + "SSO ['SSO:000003129']\n", + "['SSO:000003129']\n", + "RAST ['Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)']\n", + "SSO ['SSO:000003127', 'SSO:000030003']\n", + "['SSO:000003127', 'SSO:000030003']\n", + "RAST ['OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, actinobacterial']\n", + "SSO ['SSO:000005500']\n", + "['SSO:000005500']\n", + "RAST ['6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type']\n", + "SSO ['SSO:000000457', 'SSO:000000458']\n", + "['SSO:000000457', 'SSO:000000458']\n", + "RAST ['putative electron transport protein']\n", + "SSO ['SSO:000032491']\n", + "['SSO:000032491']\n", + "RAST ['Protein translocase membrane subunit SecG']\n", + "SSO ['SSO:000038743']\n", + "['SSO:000038743']\n", + "RAST ['Triosephosphate isomerase (EC 5.3.1.1)']\n", + "SSO ['SSO:000008383']\n", + "['SSO:000008383']\n", + "RAST ['Phosphoglycerate kinase (EC 2.7.2.3)']\n", + "SSO ['SSO:000005970']\n", + "['SSO:000005970']\n", + "RAST ['NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)']\n", + "SSO ['SSO:000005187']\n", + "['SSO:000005187']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000025307']\n", + "['SSO:000009137', 'SSO:000025307']\n", + "RAST ['Sporulation transcription regulator WhiA']\n", + "SSO ['SSO:000039228']\n", + "['SSO:000039228']\n", + "RAST ['RNase adapter protein RapZ']\n", + "SSO ['SSO:000006939']\n", + "['SSO:000006939']\n", + "RAST ['Excinuclease ABC subunit C']\n", + "SSO ['SSO:000002613']\n", + "['SSO:000002613']\n", + "RAST ['Excinuclease ABC subunit A']\n", + "SSO ['SSO:000002607']\n", + "['SSO:000002607']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Excinuclease ABC subunit B']\n", + "SSO ['SSO:000002612']\n", + "['SSO:000002612']\n", + "RAST ['Dephospho-CoA kinase (EC 2.7.1.24)']\n", + "SSO ['SSO:000002258']\n", + "['SSO:000002258']\n", + "RAST ['SSU ribosomal protein S1p']\n", + "SSO ['SSO:000007283']\n", + "['SSO:000007283']\n", + "RAST ['Conserved protein, DUF885']\n", + "SSO ['SSO:000012444']\n", + "['SSO:000012444']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['DNA polymerase I (EC 2.7.7.7)']\n", + "SSO ['SSO:000002077']\n", + "['SSO:000002077']\n", + "RAST ['1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis']\n", + "SSO ['SSO:000000036']\n", + "['SSO:000000036']\n", + "RAST ['Two-component transcriptional response regulator PdtaR, LuxR family']\n", + "SSO ['SSO:000023719', 'SSO:000026322']\n", + "['SSO:000023719', 'SSO:000026322']\n", + "RAST ['Cold shock protein of CSP family']\n", + "SSO ['SSO:000012337', 'SSO:000012339']\n", + "['SSO:000012337', 'SSO:000012339']\n", + "RAST ['Acriflavin resistance protein', 'RND multidrug efflux transporter']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Pyruvate kinase (EC 2.7.1.40)']\n", + "SSO ['SSO:000006852']\n", + "['SSO:000006852']\n", + "RAST ['Glutamate synthase [NADPH] small chain (EC 1.4.1.13)']\n", + "SSO ['SSO:000003157']\n", + "['SSO:000003157']\n", + "RAST ['Glutamate synthase [NADPH] large chain (EC 1.4.1.13)']\n", + "SSO ['SSO:000003155']\n", + "['SSO:000003155']\n", + "RAST ['Prolipoprotein diacylglyceryl transferase']\n", + "SSO ['SSO:000006370']\n", + "['SSO:000006370']\n", + "RAST ['Tryptophan synthase alpha chain (EC 4.2.1.20)']\n", + "SSO ['SSO:000008396']\n", + "['SSO:000008396']\n", + "RAST ['Tryptophan synthase beta chain (EC 4.2.1.20)']\n", + "SSO ['SSO:000008397']\n", + "['SSO:000008397']\n", + "RAST ['Indole-3-glycerol phosphate synthase (EC 4.1.1.48)']\n", + "SSO ['SSO:000003857']\n", + "['SSO:000003857']\n", + "RAST ['FIG00511163: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Anthranilate synthase, aminase component (EC 4.1.3.27)']\n", + "SSO ['SSO:000000999']\n", + "['SSO:000000999']\n", + "RAST ['Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)']\n", + "SSO ['SSO:000006033']\n", + "['SSO:000006033']\n", + "RAST ['Imidazole glycerol phosphate synthase cyclase subunit']\n", + "SSO ['SSO:000003694']\n", + "['SSO:000003694']\n", + "RAST ['ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGl']\n", + "SSO ['SSO:000000542']\n", + "['SSO:000000542']\n", + "RAST ['Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)']\n", + "SSO ['SSO:000006034', 'SSO:000043822']\n", + "['SSO:000006034', 'SSO:000043822']\n", + "RAST ['Ribulose-phosphate 3-epimerase (EC 5.1.3.1)']\n", + "SSO ['SSO:000007162']\n", + "['SSO:000007162']\n", + "RAST ['16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176)']\n", + "SSO ['SSO:000000057', 'SSO:000036869']\n", + "['SSO:000000057', 'SSO:000036869']\n", + "RAST ['Methionyl-tRNA formyltransferase (EC 2.1.2.9)']\n", + "SSO ['SSO:000004840']\n", + "['SSO:000004840']\n", + "RAST ['Helicase PriA essential for oriC/DnaA-independent DNA replication']\n", + "SSO ['SSO:000003354', 'SSO:000009137']\n", + "['SSO:000003354', 'SSO:000009137']\n", + "RAST ['S-adenosylmethionine synthetase (EC 2.5.1.6)']\n", + "SSO ['SSO:000007196', 'SSO:000042926']\n", + "['SSO:000007196', 'SSO:000042926']\n", + "RAST ['Oxidoreductase, aldo/keto reductase family']\n", + "SSO ['SSO:000020980']\n", + "['SSO:000020980']\n", + "RAST ['Transcriptional regulator, MerR family']\n", + "SSO ['SSO:000025938']\n", + "['SSO:000025938']\n", + "RAST ['Sulfate permease']\n", + "SSO ['SSO:000007808']\n", + "['SSO:000007808']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)']\n", + "SSO ['SSO:000002185']\n", + "['SSO:000002185']\n", + "RAST ['Guanylate kinase (EC 2.7.4.8)']\n", + "SSO ['SSO:000003328']\n", + "['SSO:000003328']\n", + "RAST [\"Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)\"]\n", + "SSO ['SSO:000005522']\n", + "['SSO:000005522']\n", + "RAST ['Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)']\n", + "SSO ['SSO:000001400']\n", + "['SSO:000001400']\n", + "RAST ['Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)']\n", + "SSO ['SSO:000001403']\n", + "['SSO:000001403']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Dihydroorotase (EC 3.5.2.3)']\n", + "SSO ['SSO:000002305']\n", + "['SSO:000002305']\n", + "RAST ['Aspartate carbamoyltransferase (EC 2.1.3.2)']\n", + "SSO ['SSO:000001095']\n", + "['SSO:000001095']\n", + "RAST ['Pyrimidine operon regulatory protein PyrR']\n", + "SSO ['SSO:000006825']\n", + "['SSO:000006825']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Organic hydroperoxide resistance protein']\n", + "SSO ['SSO:000020822']\n", + "['SSO:000020822']\n", + "RAST ['Organic hydroperoxide resistance transcriptional regulator']\n", + "SSO ['SSO:000020823']\n", + "['SSO:000020823']\n", + "RAST ['Transcription termination protein NusB']\n", + "SSO ['SSO:000008178']\n", + "['SSO:000008178']\n", + "RAST ['Translation elongation factor P']\n", + "SSO ['SSO:000008303']\n", + "['SSO:000008303']\n", + "RAST ['Dienelactone hydrolase family protein']\n", + "SSO ['SSO:000013094', 'SSO:000013098']\n", + "['SSO:000013094', 'SSO:000013098']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['3-dehydroquinate dehydratase II (EC 4.2.1.10)']\n", + "SSO ['SSO:000000275']\n", + "['SSO:000000275']\n", + "RAST ['3-dehydroquinate synthase (EC 4.2.3.4)']\n", + "SSO ['SSO:000000276']\n", + "['SSO:000000276']\n", + "RAST ['Shikimate kinase I (EC 2.7.1.71)']\n", + "SSO ['SSO:000007462', 'SSO:000024618']\n", + "['SSO:000007462', 'SSO:000024618']\n", + "RAST ['Chorismate synthase (EC 4.2.3.5)']\n", + "SSO ['SSO:000001558']\n", + "['SSO:000001558']\n", + "RAST ['Murein endolytic transglycosylase MltG']\n", + "SSO ['SSO:000036944']\n", + "['SSO:000036944']\n", + "RAST ['Putative pre-16S rRNA nuclease YqgF']\n", + "SSO ['SSO:000034541']\n", + "['SSO:000034541']\n", + "RAST ['Alanyl-tRNA synthetase (EC 6.1.1.7)']\n", + "SSO ['SSO:000000850', 'SSO:000042561']\n", + "['SSO:000000850', 'SSO:000042561']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['SSU ribosomal protein S4p (S9e)', 'SSU ribosomal protein S4p (S9e), zinc-independent']\n", + "RAST ['Replication-associated recombination protein RarA']\n", + "SSO ['SSO:000038974']\n", + "['SSO:000038974']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000021415']\n", + "['SSO:000009137', 'SSO:000021415']\n", + "RAST ['Uncharacterized DUF349-containing protein SCO1511']\n", + "SSO ['SSO:000039984']\n", + "['SSO:000039984']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II', \"Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)\"]\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Protein translocase subunit SecF']\n", + "SSO ['SSO:000006525']\n", + "['SSO:000006525']\n", + "RAST ['Protein translocase subunit SecD']\n", + "SSO ['SSO:000006523']\n", + "['SSO:000006523']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12)']\n", + "SSO ['SSO:000036305']\n", + "['SSO:000036305']\n", + "RAST ['Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12)']\n", + "SSO ['SSO:000017857']\n", + "['SSO:000017857']\n", + "RAST ['Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)']\n", + "SSO ['SSO:000001785']\n", + "['SSO:000001785']\n", + "RAST ['Probable transcriptional regulatory protein YebC']\n", + "SSO ['SSO:000022599']\n", + "['SSO:000022599']\n", + "RAST [\"Pyridoxal 5'-phosphate synthase (glutamine hydrolyzing), glutaminase subunit (EC 4.3.3.6)\"]\n", + "SSO ['SSO:000006805']\n", + "['SSO:000006805']\n", + "RAST [\"Pyridoxal 5'-phosphate synthase (glutamine hydrolyzing), synthase subunit (EC 4.3.3.6)\"]\n", + "SSO ['SSO:000006807']\n", + "['SSO:000006807']\n", + "RAST ['FIG049476: HIT family protein']\n", + "SSO ['SSO:000016429']\n", + "['SSO:000016429']\n", + "RAST ['Threonyl-tRNA synthetase (EC 6.1.1.3)']\n", + "SSO ['SSO:000008062', 'SSO:000043007']\n", + "['SSO:000008062', 'SSO:000043007']\n", + "RAST ['FIG01121053: hypothetical protein']\n", + "RAST ['Membrane proteins related to metalloendopeptidases']\n", + "SSO ['SSO:000019465']\n", + "['SSO:000019465']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, AfsR family']\n", + "SSO ['SSO:000009137', 'SSO:000025915']\n", + "['SSO:000009137', 'SSO:000025915']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Fatty-acyl-CoA oxidase (EC 1.3.3.6), related to yeast fatty acid beta-oxidation enzyme POX1']\n", + "SSO ['SSO:000010245', 'SSO:000016635']\n", + "['SSO:000010245', 'SSO:000016635']\n", + "RAST ['Efflux ABC transporter, permease protein']\n", + "SSO ['SSO:000029859']\n", + "['SSO:000029859']\n", + "RAST ['Efflux ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000013294']\n", + "['SSO:000013294']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily']\n", + "SSO ['SSO:000034775']\n", + "['SSO:000034775']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017392']\n", + "['SSO:000009137', 'SSO:000017392']\n", + "RAST ['Methionine ABC transporter ATP-binding protein']\n", + "RAST ['Methionine ABC transporter permease protein']\n", + "SSO ['SSO:000019558']\n", + "['SSO:000019558']\n", + "RAST ['Methionine ABC transporter substrate-binding protein']\n", + "SSO ['SSO:000004832']\n", + "['SSO:000004832']\n", + "RAST ['Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases']\n", + "SSO ['SSO:000012313']\n", + "['SSO:000012313']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Ammonium transporter']\n", + "SSO ['SSO:000000975']\n", + "['SSO:000000975']\n", + "RAST ['ATP/GTP-binding integral membrane protein']\n", + "SSO ['SSO:000001478', 'SSO:000010084']\n", + "['SSO:000001478', 'SSO:000010084']\n", + "RAST ['Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)']\n", + "SSO ['SSO:000008051']\n", + "['SSO:000008051']\n", + "RAST ['Sulfur acceptor protein => iron-sulfur cluster assembly SufE']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized protein Q1 colocalized with Q']\n", + "SSO ['SSO:000027733']\n", + "['SSO:000027733']\n", + "RAST ['Ribonuclease D (EC 3.1.26.3)']\n", + "SSO ['SSO:000007071']\n", + "['SSO:000007071']\n", + "RAST ['3-ketoacyl-CoA thiolase (EC 2.3.1.16)']\n", + "SSO ['SSO:000000312', 'SSO:000033511']\n", + "['SSO:000000312', 'SSO:000033511']\n", + "RAST ['Enoyl-CoA hydratase (EC 4.2.1.17)', '3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)', '3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)']\n", + "SSO ['SSO:000000286']\n", + "['SSO:000000286']\n", + "RAST ['1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)']\n", + "SSO ['SSO:000000046']\n", + "['SSO:000000046']\n", + "RAST ['Aconitate hydratase (EC 4.2.1.3)', '2-methylisocitrate dehydratase (EC 4.2.1.99)']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST [\"Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)\"]\n", + "SSO ['SSO:000002256', 'SSO:000029803']\n", + "['SSO:000002256', 'SSO:000029803']\n", + "RAST ['FIG01105974: Probable conserved alanine rich transmembrane protein']\n", + "RAST ['FIG01121218: hypothetical protein']\n", + "SSO ['SSO:000015849']\n", + "['SSO:000015849']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Nucleotide pyrophosphatase (EC 3.6.1.9)', 'Alkaline phosphodiesterase I (EC 3.1.4.1)']\n", + "RAST ['DNA topoisomerase IV subunit A (EC 5.99.1.3)']\n", + "SSO ['SSO:000012881']\n", + "['SSO:000012881']\n", + "RAST ['DNA topoisomerase IV subunit B (EC 5.99.1.3)']\n", + "SSO ['SSO:000012882']\n", + "['SSO:000012882']\n", + "RAST ['Uncharacterized protein Sros_7085']\n", + "SSO ['SSO:000009137', 'SSO:000041375']\n", + "['SSO:000009137', 'SSO:000041375']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['proposed amino acid ligase found clustered with an amidotransferase']\n", + "SSO ['SSO:000009260']\n", + "['SSO:000009260']\n", + "RAST ['RNA polymerase sigma factor RpoD']\n", + "SSO ['SSO:000006900', 'SSO:000006902']\n", + "['SSO:000006900', 'SSO:000006902']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['FIG00511445: hypothetical protein']\n", + "SSO ['SSO:000014004']\n", + "['SSO:000014004']\n", + "RAST ['Cytosol aminopeptidase PepA (EC 3.4.11.1)']\n", + "SSO ['SSO:000001970', 'SSO:000010813']\n", + "['SSO:000001970', 'SSO:000010813']\n", + "RAST ['Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)']\n", + "SSO ['SSO:000002297', 'SSO:000029838']\n", + "['SSO:000002297', 'SSO:000029838']\n", + "RAST ['Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)']\n", + "SSO ['SSO:000002291']\n", + "['SSO:000002291']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transmembrane protein MT2276, clustered with lipoate gene']\n", + "SSO ['SSO:000008326']\n", + "['SSO:000008326']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glutamine synthetase type I (EC 6.3.1.2)']\n", + "SSO ['SSO:000003172']\n", + "['SSO:000003172']\n", + "RAST ['UDP-glucose 6-dehydrogenase (EC 1.1.1.22)']\n", + "SSO ['SSO:000008645', 'SSO:000026460']\n", + "['SSO:000008645', 'SSO:000026460']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Hyaluronan synthase (EC 2.4.1.212)']\n", + "SSO ['SSO:000003493', 'SSO:000017392']\n", + "['SSO:000003493', 'SSO:000017392']\n", + "RAST ['Glutamine synthetase adenylyl-L-tyrosine phosphorylase (EC 2.7.7.89)', 'Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)']\n", + "RAST ['Glutamine synthetase type I (EC 6.3.1.2)']\n", + "SSO ['SSO:000003169', 'SSO:000003172']\n", + "['SSO:000003169', 'SSO:000003172']\n", + "RAST ['Glutamine amidotransferase chain of NAD synthetase', 'NAD synthetase (EC 6.3.1.5)']\n", + "SSO ['SSO:000042632']\n", + "['SSO:000042632']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Methionine aminopeptidase (EC 3.4.11.18)']\n", + "SSO ['SSO:000004833']\n", + "['SSO:000004833']\n", + "RAST ['Polyphosphate glucokinase (EC 2.7.1.63)']\n", + "SSO ['SSO:000006158']\n", + "['SSO:000006158']\n", + "RAST ['FIG137478: Hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000016519']\n", + "['SSO:000009137', 'SSO:000016519']\n", + "RAST ['GTP cyclohydrolase 1 type 2 homolog YbgI']\n", + "SSO ['SSO:000037190']\n", + "['SSO:000037190']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative hydrolase']\n", + "SSO ['SSO:000009137', 'SSO:000012466']\n", + "['SSO:000009137', 'SSO:000012466']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000039438']\n", + "['SSO:000009137', 'SSO:000039438']\n", + "RAST ['Putative esterase']\n", + "SSO ['SSO:000009716']\n", + "['SSO:000009716']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Alkyl hydroperoxide reductase subunit C-like protein']\n", + "SSO ['SSO:000000893', 'SSO:000021467']\n", + "['SSO:000000893', 'SSO:000021467']\n", + "RAST ['Pyruvate dehydrogenase E1 component (EC 1.2.4.1)']\n", + "SSO ['SSO:000006847']\n", + "['SSO:000006847']\n", + "RAST ['Hypothetical protein, possibly related to signal transduction']\n", + "SSO ['SSO:000018152', 'SSO:000030098']\n", + "['SSO:000018152', 'SSO:000030098']\n", + "RAST ['Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)']\n", + "SSO ['SSO:000004693']\n", + "['SSO:000004693']\n", + "RAST ['3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)']\n", + "SSO ['SSO:000000335']\n", + "['SSO:000000335']\n", + "RAST ['Acyl carrier protein']\n", + "SSO ['SSO:000000749']\n", + "['SSO:000000749']\n", + "RAST ['3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)']\n", + "SSO ['SSO:000000334']\n", + "['SSO:000000334']\n", + "RAST ['FIG01122152: hypothetical protein']\n", + "SSO ['SSO:000015868']\n", + "['SSO:000015868']\n", + "RAST ['DNA polymerase I (EC 2.7.7.7)']\n", + "SSO ['SSO:000002077']\n", + "['SSO:000002077']\n", + "RAST ['FIG00511859: hypothetical protein']\n", + "RAST ['NADPH-dependent FMN reductase family protein']\n", + "SSO ['SSO:000016584', 'SSO:000020359']\n", + "['SSO:000016584', 'SSO:000020359']\n", + "RAST ['coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase']\n", + "SSO ['SSO:000029606']\n", + "['SSO:000029606']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FtsK/SpoIIIE family protein']\n", + "SSO ['SSO:000009114', 'SSO:000009137']\n", + "['SSO:000009114', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000013635']\n", + "['SSO:000009137', 'SSO:000013635']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000033631']\n", + "['SSO:000009137', 'SSO:000033631']\n", + "RAST ['FIG002343: hypothetical protein']\n", + "SSO ['SSO:000013671']\n", + "['SSO:000013671']\n", + "RAST ['FIG022979: MoxR-like ATPases']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000016732']\n", + "['SSO:000009137', 'SSO:000016732']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000022788']\n", + "['SSO:000009137', 'SSO:000022788']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glycosyltransferase']\n", + "SSO ['SSO:000017392']\n", + "['SSO:000017392']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474']\n", + "['SSO:000018474']\n", + "RAST ['Peptide deformylase (EC 3.5.1.88)']\n", + "SSO ['SSO:000005794']\n", + "['SSO:000005794']\n", + "RAST ['D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)']\n", + "SSO ['SSO:000001979']\n", + "['SSO:000001979']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Dipeptide ABC transporter, ATP-binding protein DppD (TC 3.A.1.5.2)']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['Oligopeptide ABC transporter, permease protein OppC (TC 3.A.1.5.1)']\n", + "RAST ['Oligopeptide ABC transporter, permease protein OppB (TC 3.A.1.5.1)']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000034323']\n", + "['SSO:000034323']\n", + "RAST ['DNA primase DnaG']\n", + "SSO ['SSO:000002090', 'SSO:000035413']\n", + "['SSO:000002090', 'SSO:000035413']\n", + "RAST ['dNTP triphosphohydrolase, broad substrate specificity']\n", + "SSO ['SSO:000002246', 'SSO:000009081']\n", + "['SSO:000002246', 'SSO:000009081']\n", + "RAST ['tRNA-dihydrouridine synthase DusB']\n", + "SSO ['SSO:000033453']\n", + "['SSO:000033453']\n", + "RAST ['YbaK/prolyl-tRNA synthetase associated region']\n", + "SSO ['SSO:000029112']\n", + "['SSO:000029112']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain']\n", + "SSO ['SSO:000009536']\n", + "['SSO:000009536']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glycyl-tRNA synthetase (EC 6.1.1.14)']\n", + "SSO ['SSO:000003308', 'SSO:000043843']\n", + "['SSO:000003308', 'SSO:000043843']\n", + "RAST ['Cysteine desulfurase (EC 2.8.1.7)']\n", + "SSO ['SSO:000001856']\n", + "['SSO:000001856']\n", + "RAST ['Transcriptional regulator, LysR family']\n", + "SSO ['SSO:000025403']\n", + "['SSO:000025403']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Trans,polycis-decaprenyl diphosphate synthase (EC 2.5.1.86)']\n", + "SSO ['SSO:000008127']\n", + "['SSO:000008127']\n", + "RAST ['DNA recombination and repair protein RecO']\n", + "SSO ['SSO:000002096']\n", + "['SSO:000002096']\n", + "RAST ['putative membrane protein']\n", + "SSO ['SSO:000009137', 'SSO:000030665']\n", + "['SSO:000009137', 'SSO:000030665']\n", + "RAST ['2-isopropylmalate synthase (EC 2.3.3.13)']\n", + "SSO ['SSO:000000168']\n", + "['SSO:000000168']\n", + "RAST ['Two-component transcriptional response regulator, NarL/FixJ family']\n", + "SSO ['SSO:000039859']\n", + "['SSO:000039859']\n", + "RAST ['Two-component system sensor histidine kinase']\n", + "SSO ['SSO:000009137', 'SSO:000021767']\n", + "['SSO:000009137', 'SSO:000021767']\n", + "RAST ['GTP-binding protein Era']\n", + "SSO ['SSO:000002995']\n", + "['SSO:000002995']\n", + "RAST ['Magnesium and cobalt efflux protein CorC']\n", + "SSO ['SSO:000004629']\n", + "['SSO:000004629']\n", + "RAST ['Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly']\n", + "SSO ['SSO:000004804']\n", + "['SSO:000004804']\n", + "RAST ['Phosphate starvation-inducible protein PhoH, predicted ATPase']\n", + "SSO ['SSO:000005923', 'SSO:000021593']\n", + "['SSO:000005923', 'SSO:000021593']\n", + "RAST ['Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases']\n", + "SSO ['SSO:000013082']\n", + "['SSO:000013082']\n", + "RAST ['16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193)']\n", + "SSO ['SSO:000000064']\n", + "['SSO:000000064']\n", + "RAST ['Chaperone protein DnaJ']\n", + "SSO ['SSO:000001503']\n", + "['SSO:000001503']\n", + "RAST ['Heat-inducible transcription repressor HrcA']\n", + "SSO ['SSO:000003352']\n", + "['SSO:000003352']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW']\n", + "SSO ['SSO:000029759', 'SSO:000037447']\n", + "['SSO:000029759', 'SSO:000037447']\n", + "RAST ['A3(2) GLYCOGEN METABOLISM CLUSTERI']\n", + "SSO ['SSO:000009777']\n", + "['SSO:000009777']\n", + "RAST ['Translation elongation factor LepA']\n", + "SSO ['SSO:000008302']\n", + "['SSO:000008302']\n", + "RAST ['Aspartate aminotransferase (EC 2.6.1.1)']\n", + "SSO ['SSO:000001093']\n", + "['SSO:000001093']\n", + "RAST ['SSU ribosomal protein S20p']\n", + "SSO ['SSO:000007286']\n", + "['SSO:000007286']\n", + "RAST ['DNA polymerase III delta subunit (EC 2.7.7.7)']\n", + "SSO ['SSO:000002083', 'SSO:000012810']\n", + "['SSO:000002083', 'SSO:000012810']\n", + "RAST ['DNA internalization-related competence protein ComEC/Rec2']\n", + "SSO ['SSO:000002072']\n", + "['SSO:000002072']\n", + "RAST ['UDP-glucose 4-epimerase (EC 5.1.3.2)']\n", + "SSO ['SSO:000008644']\n", + "['SSO:000008644']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Leucyl-tRNA synthetase (EC 6.1.1.4)']\n", + "SSO ['SSO:000004422', 'SSO:000042403']\n", + "['SSO:000004422', 'SSO:000042403']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Aminodeoxychorismate lyase (EC 4.1.3.38)']\n", + "SSO ['SSO:000000956', 'SSO:000009137']\n", + "['SSO:000000956', 'SSO:000009137']\n", + "RAST ['Transport ATP-binding protein CydC']\n", + "SSO ['SSO:000042168']\n", + "['SSO:000042168']\n", + "RAST ['Efflux ABC transporter for glutathione/L-cysteine, essential for assembly of bd-type respiratory oxidases => CydD subunit']\n", + "RAST ['Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)']\n", + "SSO ['SSO:000001940']\n", + "['SSO:000001940']\n", + "RAST ['Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)']\n", + "SSO ['SSO:000001939']\n", + "['SSO:000001939']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 13, osmolytes)']\n", + "SSO ['SSO:000034273']\n", + "['SSO:000034273']\n", + "RAST ['ABC transporter, permease protein (cluster 13, osmolytes)']\n", + "SSO ['SSO:000034272']\n", + "['SSO:000034272']\n", + "RAST ['ABC transporter, permease protein (cluster 13, osmolytes)']\n", + "SSO ['SSO:000034272']\n", + "['SSO:000034272']\n", + "RAST ['ABC transporter, ATP-binding protein (cluster 13, osmolytes)']\n", + "SSO ['SSO:000034233']\n", + "['SSO:000034233']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['Gifsy-2 prophage protein']\n", + "SSO ['SSO:000017097']\n", + "['SSO:000017097']\n", + "RAST ['FIG01028644: hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glucoamylase (EC 3.2.1.3)']\n", + "SSO ['SSO:000017202']\n", + "['SSO:000017202']\n", + "RAST ['Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)']\n", + "SSO ['SSO:000003127', 'SSO:000030003']\n", + "['SSO:000003127', 'SSO:000030003']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7)']\n", + "SSO ['SSO:000012808', 'SSO:000013458']\n", + "['SSO:000012808', 'SSO:000013458']\n", + "RAST ['Glutathione S-transferase, omega (EC 2.5.1.18)']\n", + "SSO ['SSO:000003209', 'SSO:000003216']\n", + "['SSO:000003209', 'SSO:000003216']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Signal transduction response regulator', 'GAF domain-containing protein']\n", + "SSO ['SSO:000012915']\n", + "['SSO:000012915']\n", + "RAST ['Aldehyde dehydrogenase (EC 1.2.1.3)']\n", + "SSO ['SSO:000000864']\n", + "['SSO:000000864']\n", + "RAST ['FIG01043527: hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST [\"3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)\"]\n", + "SSO ['SSO:000000256', 'SSO:000021634']\n", + "['SSO:000000256', 'SSO:000021634']\n", + "RAST ['probable UDP-glucose-4-epimerase']\n", + "SSO ['SSO:000031657']\n", + "['SSO:000031657']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Nucleoside-diphosphate-sugar epimerase']\n", + "SSO ['SSO:000020663']\n", + "['SSO:000020663']\n", + "RAST ['FMN adenylyltransferase (EC 2.7.7.2)', 'Riboflavin kinase (EC 2.7.1.26)']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000009137', 'SSO:000018474']\n", + "['SSO:000009137', 'SSO:000018474']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['tRNA pseudouridine(55) synthase (EC 5.4.99.25)']\n", + "SSO ['SSO:000009366']\n", + "['SSO:000009366']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['A/G-specific adenine glycosylase (EC 3.2.2.-)']\n", + "SSO ['SSO:000000466']\n", + "['SSO:000000466']\n", + "RAST ['Ribosome-binding factor A']\n", + "SSO ['SSO:000007152']\n", + "['SSO:000007152']\n", + "RAST ['Translation initiation factor 2']\n", + "SSO ['SSO:000008310', 'SSO:000033640']\n", + "['SSO:000008310', 'SSO:000033640']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcription termination protein NusA']\n", + "SSO ['SSO:000008177']\n", + "['SSO:000008177']\n", + "RAST ['Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type']\n", + "SSO ['SSO:000006375', 'SSO:000043132']\n", + "['SSO:000006375', 'SSO:000043132']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Aerotolerance protein BatB']\n", + "SSO ['SSO:000034523']\n", + "['SSO:000034523']\n", + "RAST ['Aerotolerance protein BatA']\n", + "SSO ['SSO:000034522']\n", + "['SSO:000034522']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein PA3071']\n", + "SSO ['SSO:000009139']\n", + "['SSO:000009139']\n", + "RAST ['MoxR-like ATPase in aerotolerance operon']\n", + "SSO ['SSO:000004959']\n", + "['SSO:000004959']\n", + "RAST ['(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (flavodoxin) (EC 1.17.7.3)']\n", + "SSO ['SSO:000033866']\n", + "['SSO:000033866']\n", + "RAST ['Membrane-associated zinc metalloprotease']\n", + "SSO ['SSO:000004780']\n", + "['SSO:000004780']\n", + "RAST ['1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)']\n", + "SSO ['SSO:000000045']\n", + "['SSO:000000045']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['OsmC/Ohr family protein']\n", + "SSO ['SSO:000020840', 'SSO:000021467']\n", + "['SSO:000020840', 'SSO:000021467']\n", + "RAST ['Hypothetical protein of L-Asparaginase type 2-like superfamily']\n", + "SSO ['SSO:000003627', 'SSO:000009137']\n", + "['SSO:000003627', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Ribonuclease E (EC 3.1.26.12)']\n", + "SSO ['SSO:000007072', 'SSO:000013635']\n", + "['SSO:000007072', 'SSO:000013635']\n", + "RAST ['FIG001454: Transglutaminase-like enzymes, putative cysteine proteases']\n", + "SSO ['SSO:000013651']\n", + "['SSO:000013651']\n", + "RAST ['FIG002343: hypothetical protein']\n", + "SSO ['SSO:000013671']\n", + "['SSO:000013671']\n", + "RAST ['FIG022979: MoxR-like ATPases']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Serine/threonine protein kinase']\n", + "SSO ['SSO:000024584']\n", + "['SSO:000024584']\n", + "RAST ['Protein serine/threonine phosphatase PrpC, regulation of stationary phase']\n", + "SSO ['SSO:000006517', 'SSO:000024592']\n", + "['SSO:000006517', 'SSO:000024592']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000013635']\n", + "['SSO:000009137', 'SSO:000013635']\n", + "RAST ['Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)']\n", + "SSO ['SSO:000004870', 'SSO:000019607']\n", + "['SSO:000004870', 'SSO:000019607']\n", + "RAST ['UPF0246 protein YaaA']\n", + "SSO ['SSO:000008666']\n", + "['SSO:000008666']\n", + "RAST ['ATP synthase epsilon chain (EC 3.6.3.14)']\n", + "SSO ['SSO:000000554']\n", + "['SSO:000000554']\n", + "RAST ['ATP synthase beta chain (EC 3.6.3.14)']\n", + "SSO ['SSO:000000551']\n", + "['SSO:000000551']\n", + "RAST ['ATP synthase gamma chain (EC 3.6.3.14)']\n", + "SSO ['SSO:000000555']\n", + "['SSO:000000555']\n", + "RAST ['ATP synthase alpha chain (EC 3.6.3.14)']\n", + "SSO ['SSO:000000549', 'SSO:000013601']\n", + "['SSO:000000549', 'SSO:000013601']\n", + "RAST ['ATP synthase delta chain (EC 3.6.3.14)']\n", + "SSO ['SSO:000000553']\n", + "['SSO:000000553']\n", + "RAST ['ATP synthase F0 sector subunit b (EC 3.6.3.14)']\n", + "SSO ['SSO:000000546']\n", + "['SSO:000000546']\n", + "RAST ['ATP synthase F0 sector subunit c (EC 3.6.3.14)']\n", + "SSO ['SSO:000000548']\n", + "['SSO:000000548']\n", + "RAST ['ATP synthase F0 sector subunit a (EC 3.6.3.14)']\n", + "SSO ['SSO:000000545']\n", + "['SSO:000000545']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Threonylcarbamoyl-AMP synthase (EC 2.7.7.87)']\n", + "SSO ['SSO:000039483']\n", + "['SSO:000039483']\n", + "RAST ['Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297)']\n", + "SSO ['SSO:000005792']\n", + "['SSO:000005792']\n", + "RAST ['Peptide chain release factor 1']\n", + "SSO ['SSO:000005788']\n", + "['SSO:000005788']\n", + "RAST ['Transcription termination factor Rho']\n", + "SSO ['SSO:000008176']\n", + "['SSO:000008176']\n", + "RAST ['Homoserine kinase (EC 2.7.1.39)']\n", + "SSO ['SSO:000003486']\n", + "['SSO:000003486']\n", + "RAST ['Threonine synthase (EC 4.2.3.1)']\n", + "SSO ['SSO:000008061']\n", + "['SSO:000008061']\n", + "RAST ['Homoserine dehydrogenase (EC 1.1.1.3)']\n", + "SSO ['SSO:000003485']\n", + "['SSO:000003485']\n", + "RAST ['Diaminopimelate decarboxylase (EC 4.1.1.20)']\n", + "SSO ['SSO:000002280']\n", + "['SSO:000002280']\n", + "RAST ['Alkaline phosphatase (EC 3.1.3.1)']\n", + "SSO ['SSO:000000886']\n", + "['SSO:000000886']\n", + "RAST ['Arginyl-tRNA synthetase (EC 6.1.1.19)']\n", + "SSO ['SSO:000001053', 'SSO:000043390']\n", + "['SSO:000001053', 'SSO:000043390']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glutamine amidotransferase, class I']\n", + "SSO ['SSO:000003168']\n", + "['SSO:000003168']\n", + "RAST [\"Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)\"]\n", + "SSO ['SSO:000006811']\n", + "['SSO:000006811']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000042367']\n", + "['SSO:000009137', 'SSO:000042367']\n", + "RAST ['Suppressor of sigma54-dependent transcription, PspA-like']\n", + "SSO ['SSO:000007866', 'SSO:000022976']\n", + "['SSO:000007866', 'SSO:000022976']\n", + "RAST ['Arginase (EC 3.5.3.1)']\n", + "SSO ['SSO:000001042']\n", + "['SSO:000001042']\n", + "RAST ['Enoyl-CoA hydratase (EC 4.2.1.17)']\n", + "SSO ['SSO:000002538']\n", + "['SSO:000002538']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase']\n", + "SSO ['SSO:000005641', 'SSO:000037035']\n", + "['SSO:000005641', 'SSO:000037035']\n", + "RAST ['FIG00512259: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Oxidoreductase']\n", + "SSO ['SSO:000020957']\n", + "['SSO:000020957']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000024633']\n", + "['SSO:000009137', 'SSO:000024633']\n", + "RAST ['ABC-type Fe3+-siderophore transport system, permease component']\n", + "SSO ['SSO:000000509']\n", + "['SSO:000000509']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ABC-type Fe3+-siderophore transport system, ATPase component']\n", + "SSO ['SSO:000000506', 'SSO:000009848']\n", + "['SSO:000000506', 'SSO:000009848']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000034323']\n", + "['SSO:000034323']\n", + "RAST ['Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2)']\n", + "RAST ['Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)']\n", + "SSO ['SSO:000002346']\n", + "['SSO:000002346']\n", + "RAST ['Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)']\n", + "SSO ['SSO:000005495', 'SSO:000009848']\n", + "['SSO:000005495', 'SSO:000009848']\n", + "RAST ['Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)']\n", + "SSO ['SSO:000005491', 'SSO:000009848']\n", + "['SSO:000005491', 'SSO:000009848']\n", + "RAST ['Amidase']\n", + "SSO ['SSO:000010533']\n", + "['SSO:000010533']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Outer membrane protein assembly factor YaeT precursor']\n", + "RAST ['Acetyltransferase, GNAT family']\n", + "SSO ['SSO:000005120', 'SSO:000009631']\n", + "['SSO:000005120', 'SSO:000009631']\n", + "RAST ['Uracil-DNA glycosylase, family 1 (EC 3.2.2.27)']\n", + "SSO ['SSO:000008851', 'SSO:000028867']\n", + "['SSO:000008851', 'SSO:000028867']\n", + "RAST ['Cyanophycinase (EC 3.4.15.6)']\n", + "SSO ['SSO:000001823']\n", + "['SSO:000001823']\n", + "RAST ['Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22)']\n", + "SSO ['SSO:000008962', 'SSO:000021717']\n", + "['SSO:000008962', 'SSO:000021717']\n", + "RAST ['Alkylated DNA repair protein AlkB']\n", + "SSO ['SSO:000000894', 'SSO:000010503']\n", + "['SSO:000000894', 'SSO:000010503']\n", + "RAST ['Transglutaminase domain protein']\n", + "SSO ['SSO:000025996', 'SSO:000033632']\n", + "['SSO:000025996', 'SSO:000033632']\n", + "RAST ['YdfG-like protein']\n", + "SSO ['SSO:000041722']\n", + "['SSO:000041722']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)', 'O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)']\n", + "RAST ['Homoserine O-acetyltransferase (EC 2.3.1.31)']\n", + "SSO ['SSO:000003483']\n", + "['SSO:000003483']\n", + "RAST ['Two-component system sensor histidine kinase']\n", + "SSO ['SSO:000010002', 'SSO:000021767']\n", + "['SSO:000010002', 'SSO:000021767']\n", + "RAST ['FIG00512468: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['FIG00544011: hypothetical protein']\n", + "SSO ['SSO:000014163']\n", + "['SSO:000014163']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474']\n", + "['SSO:000018474']\n", + "RAST ['putative secreted protein']\n", + "SSO ['SSO:000030757']\n", + "['SSO:000030757']\n", + "RAST ['NAD(P)HX epimerase', 'NAD(P)HX dehydratase']\n", + "RAST ['HAD-superfamily hydrolase subfamily IA, variant 3']\n", + "SSO ['SSO:000017526']\n", + "['SSO:000017526']\n", + "RAST ['NADH-dependent flavin oxidoreductase']\n", + "SSO ['SSO:000020331', 'SSO:000020342']\n", + "['SSO:000020331', 'SSO:000020342']\n", + "RAST ['Uncharacterized protein Rv1841c/MT1889']\n", + "SSO ['SSO:000027747']\n", + "['SSO:000027747']\n", + "RAST ['Hemolysins and related proteins containing CBS domains']\n", + "SSO ['SSO:000017744']\n", + "['SSO:000017744']\n", + "RAST ['CBS domain', \"Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)\"]\n", + "RAST ['Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)', '2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)', '2-oxoglutarate decarboxylase (EC 4.1.1.71)', '2-hydroxy-3-oxoadipate synthase (EC 2.2.1.5)']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative anti-sigma factor']\n", + "SSO ['SSO:000023186']\n", + "['SSO:000023186']\n", + "RAST ['RNA polymerase sigma-54 factor RpoN']\n", + "SSO ['SSO:000006914']\n", + "['SSO:000006914']\n", + "RAST ['3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)']\n", + "SSO ['SSO:000034048']\n", + "['SSO:000034048']\n", + "RAST ['Ribosome small subunit biogenesis RbfA-release protein RsgA']\n", + "SSO ['SSO:000007149']\n", + "['SSO:000007149']\n", + "RAST ['Histidinol-phosphatase [alternative form] (EC 3.1.3.15)']\n", + "SSO ['SSO:000003447', 'SSO:000003448']\n", + "['SSO:000003447', 'SSO:000003448']\n", + "RAST ['DedA protein']\n", + "SSO ['SSO:000000886', 'SSO:000002229']\n", + "['SSO:000000886', 'SSO:000002229']\n", + "RAST ['tmRNA-binding protein SmpB']\n", + "SSO ['SSO:000009411']\n", + "['SSO:000009411']\n", + "RAST ['Cell-division-associated, ABC-transporter-like signaling protein FtsX']\n", + "SSO ['SSO:000035066']\n", + "['SSO:000035066']\n", + "RAST ['Cell-division-associated, ABC-transporter-like signaling protein FtsE']\n", + "SSO ['SSO:000035065']\n", + "['SSO:000035065']\n", + "RAST ['Peptide chain release factor 2']\n", + "SSO ['SSO:000005789']\n", + "['SSO:000005789']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cysteine desulfurase (EC 2.8.1.7)']\n", + "SSO ['SSO:000001856']\n", + "['SSO:000001856']\n", + "RAST ['Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196)']\n", + "SSO ['SSO:000018920']\n", + "['SSO:000018920']\n", + "RAST ['Cys-tRNA(Pro) deacylase YbaK']\n", + "SSO ['SSO:000001849']\n", + "['SSO:000001849']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative glucanase glgE (EC 3.2.1.-)']\n", + "SSO ['SSO:000023316']\n", + "['SSO:000023316']\n", + "RAST ['1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)']\n", + "SSO ['SSO:000000034']\n", + "['SSO:000000034']\n", + "RAST ['FIG000875: Thioredoxin domain-containing protein EC-YbbN']\n", + "SSO ['SSO:000025554']\n", + "['SSO:000025554']\n", + "RAST ['FIG00762332: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Hydrolase, alpha/beta fold family']\n", + "SSO ['SSO:000017962']\n", + "['SSO:000017962']\n", + "RAST ['putative secreted protein']\n", + "SSO ['SSO:000030757']\n", + "['SSO:000030757']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phosphatidate cytidylyltransferase (EC 2.7.7.41)']\n", + "SSO ['SSO:000005932']\n", + "['SSO:000005932']\n", + "RAST ['Ribosome recycling factor']\n", + "SSO ['SSO:000007148']\n", + "['SSO:000007148']\n", + "RAST ['Uridylate kinase (EC 2.7.4.22)']\n", + "SSO ['SSO:000033811', 'SSO:000044197']\n", + "['SSO:000033811', 'SSO:000044197']\n", + "RAST ['Translation elongation factor Ts']\n", + "SSO ['SSO:000008306']\n", + "['SSO:000008306']\n", + "RAST ['SSU ribosomal protein S2p (SAe)']\n", + "SSO ['SSO:000007308']\n", + "['SSO:000007308']\n", + "RAST ['Glucose/mannose:H+ symporter GlcP']\n", + "SSO ['SSO:000017227']\n", + "['SSO:000017227']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Site-specific tyrosine recombinase XerC']\n", + "SSO ['SSO:000007587', 'SSO:000026421']\n", + "['SSO:000007587', 'SSO:000026421']\n", + "RAST ['Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake']\n", + "SSO ['SSO:000007181', 'SSO:000012836']\n", + "['SSO:000007181', 'SSO:000012836']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Probable phiRv1 integrase']\n", + "SSO ['SSO:000022539']\n", + "['SSO:000022539']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phage tail length tape-measure protein']\n", + "SSO ['SSO:000031406']\n", + "['SSO:000031406']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, GntR family']\n", + "SSO ['SSO:000019301']\n", + "['SSO:000019301']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination']\n", + "SSO ['SSO:000009788']\n", + "['SSO:000009788']\n", + "RAST ['UPF0102 protein YraN']\n", + "SSO ['SSO:000026500']\n", + "['SSO:000026500']\n", + "RAST ['Protein often found in Actinomycetes clustered with signal peptidase and/or RNaseHII']\n", + "SSO ['SSO:000006514']\n", + "['SSO:000006514']\n", + "RAST ['Ribonuclease HII (EC 3.1.26.4)']\n", + "SSO ['SSO:000007081']\n", + "['SSO:000007081']\n", + "RAST ['Signal peptidase I (EC 3.4.21.89)']\n", + "SSO ['SSO:000007517']\n", + "['SSO:000007517']\n", + "RAST ['LSU ribosomal protein L19p']\n", + "SSO ['SSO:000004233', 'SSO:000009741']\n", + "['SSO:000004233', 'SSO:000009741']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Methionine aminopeptidase (EC 3.4.11.18)']\n", + "SSO ['SSO:000004833']\n", + "['SSO:000004833']\n", + "RAST ['tRNA (guanine(37)-N(1))-methyltransferase (EC 2.1.1.228)']\n", + "SSO ['SSO:000009340']\n", + "['SSO:000009340']\n", + "RAST ['16S rRNA processing protein RimM']\n", + "SSO ['SSO:000000065', 'SSO:000024182']\n", + "['SSO:000000065', 'SSO:000024182']\n", + "RAST ['KH domain RNA binding protein YlqC']\n", + "SSO ['SSO:000004075', 'SSO:000023851']\n", + "['SSO:000004075', 'SSO:000023851']\n", + "RAST ['SSU ribosomal protein S16p']\n", + "SSO ['SSO:000007266']\n", + "['SSO:000007266']\n", + "RAST ['2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)']\n", + "SSO ['SSO:000000102']\n", + "['SSO:000000102']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['Acyl-CoA dehydrogenase']\n", + "SSO ['SSO:000010245', 'SSO:000010255']\n", + "['SSO:000010245', 'SSO:000010255']\n", + "RAST ['Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)']\n", + "SSO ['SSO:000004543', 'SSO:000034048']\n", + "['SSO:000004543', 'SSO:000034048']\n", + "RAST ['FIG074102: hypothetical protein']\n", + "SSO ['SSO:000003160']\n", + "['SSO:000003160']\n", + "RAST ['Signal recognition particle protein Ffh']\n", + "SSO ['SSO:000007523']\n", + "['SSO:000007523']\n", + "RAST ['Signal recognition particle receptor FtsY']\n", + "SSO ['SSO:000007524']\n", + "['SSO:000007524']\n", + "RAST ['Integral membrane protein TerC']\n", + "SSO ['SSO:000018482', 'SSO:000025520']\n", + "['SSO:000018482', 'SSO:000025520']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Chromosome partition protein smc']\n", + "SSO ['SSO:000001570']\n", + "['SSO:000001570']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)']\n", + "SSO ['SSO:000002875']\n", + "['SSO:000002875']\n", + "RAST ['Ribonuclease III (EC 3.1.26.3)']\n", + "SSO ['SSO:000007084']\n", + "['SSO:000007084']\n", + "RAST ['LSU ribosomal protein L32p, zinc-independent', 'LSU ribosomal protein L32p']\n", + "RAST ['FIG01269488: protein, clustered with ribosomal protein L32p']\n", + "RAST ['FIG001454: Transglutaminase-like enzymes, putative cysteine proteases']\n", + "SSO ['SSO:000013651', 'SSO:000033631']\n", + "['SSO:000013651', 'SSO:000033631']\n", + "RAST ['FIG002343: hypothetical protein']\n", + "SSO ['SSO:000013671']\n", + "['SSO:000013671']\n", + "RAST ['FIG022979: MoxR-like ATPases']\n", + "RAST ['Phosphopantetheine adenylyltransferase (EC 2.7.7.3)']\n", + "SSO ['SSO:000006021']\n", + "['SSO:000006021']\n", + "RAST ['ATP-dependent DNA helicase RecG (EC 3.6.4.12)']\n", + "SSO ['SSO:000000569']\n", + "['SSO:000000569']\n", + "RAST ['16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171)']\n", + "SSO ['SSO:000000063', 'SSO:000036869']\n", + "['SSO:000000063', 'SSO:000036869']\n", + "RAST ['Thiamine-monophosphate kinase (EC 2.7.4.16)']\n", + "SSO ['SSO:000008014', 'SSO:000043047']\n", + "['SSO:000008014', 'SSO:000043047']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['D-alanine--D-alanine ligase (EC 6.3.2.4)']\n", + "SSO ['SSO:000001986']\n", + "['SSO:000001986']\n", + "RAST ['Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)']\n", + "SSO ['SSO:000003258']\n", + "['SSO:000003258']\n", + "RAST ['Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)']\n", + "SSO ['SSO:000000796', 'SSO:000009471']\n", + "['SSO:000000796', 'SSO:000009471']\n", + "RAST ['UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)']\n", + "SSO ['SSO:000008616']\n", + "['SSO:000008616']\n", + "RAST ['3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)']\n", + "SSO ['SSO:000000307']\n", + "['SSO:000000307']\n", + "RAST ['3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)']\n", + "SSO ['SSO:000000306']\n", + "['SSO:000000306']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Branched-chain amino acid aminotransferase (EC 2.6.1.42)']\n", + "SSO ['SSO:000001260']\n", + "['SSO:000001260']\n", + "RAST ['3-isopropylmalate dehydrogenase (EC 1.1.1.85)']\n", + "SSO ['SSO:000000308']\n", + "['SSO:000000308']\n", + "RAST ['D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)']\n", + "SSO ['SSO:000001979', 'SSO:000021650']\n", + "['SSO:000001979', 'SSO:000021650']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)']\n", + "SSO ['SSO:000019339']\n", + "['SSO:000019339']\n", + "RAST ['Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86)']\n", + "SSO ['SSO:000004083', 'SSO:000036468']\n", + "['SSO:000004083', 'SSO:000036468']\n", + "RAST ['Acetolactate synthase small subunit (EC 2.2.1.6)']\n", + "SSO ['SSO:000000686']\n", + "['SSO:000000686']\n", + "RAST ['Acetolactate synthase large subunit (EC 2.2.1.6)']\n", + "SSO ['SSO:000000685']\n", + "['SSO:000000685']\n", + "RAST ['Dihydroxy-acid dehydratase (EC 4.2.1.9)']\n", + "SSO ['SSO:000002316']\n", + "['SSO:000002316']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Antitoxin HigA']\n", + "SSO ['SSO:000001018']\n", + "['SSO:000001018']\n", + "RAST ['Toxin HigB']\n", + "SSO ['SSO:000008113', 'SSO:000009137']\n", + "['SSO:000008113', 'SSO:000009137']\n", + "RAST ['Trehalose-6-phosphate phosphatase (EC 3.1.3.12)']\n", + "SSO ['SSO:000010460', 'SSO:000033686']\n", + "['SSO:000010460', 'SSO:000033686']\n", + "RAST ['Trehalose-6-phosphate synthase (EC 2.4.1.15)']\n", + "SSO ['SSO:000026177']\n", + "['SSO:000026177']\n", + "RAST ['Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation']\n", + "SSO ['SSO:000007157', 'SSO:000021723']\n", + "['SSO:000007157', 'SSO:000021723']\n", + "RAST ['Magnesium and cobalt transport protein CorA']\n", + "SSO ['SSO:000004630']\n", + "['SSO:000004630']\n", + "RAST ['Uncharacterized protein SCO3347']\n", + "SSO ['SSO:000025246', 'SSO:000027766']\n", + "['SSO:000025246', 'SSO:000027766']\n", + "RAST ['N-acetylmuramoyl-L-alanine amidase']\n", + "SSO ['SSO:000005115', 'SSO:000009137']\n", + "['SSO:000005115', 'SSO:000009137']\n", + "RAST ['membrane protein, putative']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative anion permease']\n", + "SSO ['SSO:000038786']\n", + "['SSO:000038786']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Membrane protein']\n", + "SSO ['SSO:000009756', 'SSO:000019395']\n", + "['SSO:000009756', 'SSO:000019395']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['L-asparagine permease']\n", + "SSO ['SSO:000000948', 'SSO:000018742']\n", + "['SSO:000000948', 'SSO:000018742']\n", + "RAST ['lysophospholipase-like family protein']\n", + "SSO ['SSO:000021274', 'SSO:000030979']\n", + "['SSO:000021274', 'SSO:000030979']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000039438']\n", + "['SSO:000009137', 'SSO:000039438']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474']\n", + "['SSO:000018474']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['RNA polymerase ECF-type sigma factor']\n", + "SSO ['SSO:000023836']\n", + "['SSO:000023836']\n", + "RAST ['Flavodoxin reductases (ferredoxin-NADPH reductases) family 1']\n", + "SSO ['SSO:000009137', 'SSO:000013224']\n", + "['SSO:000009137', 'SSO:000013224']\n", + "RAST ['FAD:protein FMN transferase (EC 2.7.1.180)']\n", + "SSO ['SSO:000013628']\n", + "['SSO:000013628']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Methionine ABC transporter substrate-binding protein']\n", + "SSO ['SSO:000004832']\n", + "['SSO:000004832']\n", + "RAST ['Methionine ABC transporter ATP-binding protein']\n", + "RAST ['Methionine ABC transporter permease protein']\n", + "SSO ['SSO:000019558']\n", + "['SSO:000019558']\n", + "RAST ['Putative oxidoreductase']\n", + "RAST ['Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family']\n", + "SSO ['SSO:000002992']\n", + "['SSO:000002992']\n", + "RAST ['LSU ribosomal protein L36p', 'LSU ribosomal protein L36p, zinc-independent']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Non-heme chloroperoxidase (EC 1.11.1.10)']\n", + "SSO ['SSO:000020605']\n", + "['SSO:000020605']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017392']\n", + "['SSO:000009137', 'SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017392']\n", + "['SSO:000009137', 'SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative sugar transferase']\n", + "SSO ['SSO:000017392', 'SSO:000023617']\n", + "['SSO:000017392', 'SSO:000023617']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['L-arabinose ABC transporter, substrate-binding protein AraF']\n", + "SSO ['SSO:000036486']\n", + "['SSO:000036486']\n", + "RAST ['L-arabinose ABC transporter, ATP-binding protein AraG']\n", + "SSO ['SSO:000036484']\n", + "['SSO:000036484']\n", + "RAST ['L-arabinose ABC transporter, permease protein AraH']\n", + "SSO ['SSO:000036485']\n", + "['SSO:000036485']\n", + "RAST ['Transcriptional regulator, LacI/PurR family']\n", + "RAST ['Mn-dependent transcriptional regulator MntR']\n", + "SSO ['SSO:000019939']\n", + "['SSO:000019939']\n", + "RAST ['Manganese transport protein MntH']\n", + "SSO ['SSO:000019329']\n", + "['SSO:000019329']\n", + "RAST ['ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines)']\n", + "SSO ['SSO:000034238']\n", + "['SSO:000034238']\n", + "RAST ['ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)']\n", + "SSO ['SSO:000034225']\n", + "['SSO:000034225']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines)']\n", + "SSO ['SSO:000034320']\n", + "['SSO:000034320']\n", + "RAST ['Adenosylhomocysteinase (EC 3.3.1.1)']\n", + "SSO ['SSO:000000817']\n", + "['SSO:000000817']\n", + "RAST ['possible chlorohydrolase-like protein']\n", + "SSO ['SSO:000010559', 'SSO:000031525']\n", + "['SSO:000010559', 'SSO:000031525']\n", + "RAST ['FIG018171: hypothetical protein of Cupin superfamily']\n", + "SSO ['SSO:000012512', 'SSO:000016284']\n", + "['SSO:000012512', 'SSO:000016284']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['AhpC/Tsa family protein GSU0066']\n", + "SSO ['SSO:000010350', 'SSO:000010351']\n", + "['SSO:000010350', 'SSO:000010351']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Protein of unknown function UPF0060']\n", + "SSO ['SSO:000022893']\n", + "['SSO:000022893']\n", + "RAST ['Cystathionine beta-lyase, type II (EC 4.4.1.8)']\n", + "SSO ['SSO:000012562']\n", + "['SSO:000012562']\n", + "RAST ['ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)']\n", + "SSO ['SSO:000034225']\n", + "['SSO:000034225']\n", + "RAST ['ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines)']\n", + "SSO ['SSO:000034238']\n", + "['SSO:000034238']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines)']\n", + "SSO ['SSO:000034320']\n", + "['SSO:000034320']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Nitrogen regulatory protein P-II']\n", + "SSO ['SSO:000005355']\n", + "['SSO:000005355']\n", + "RAST ['Nitrilotriacetate monooxygenase component A (EC 1.14.13.-)']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)', '3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)']\n", + "SSO ['SSO:000000286']\n", + "['SSO:000000286']\n", + "RAST ['Transcriptional repressor TetR family => EthR']\n", + "RAST ['Monooxygenase, flavin-binding family']\n", + "SSO ['SSO:000020034', 'SSO:000037035']\n", + "['SSO:000020034', 'SSO:000037035']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Major myo-inositol transporter IolT']\n", + "SSO ['SSO:000004665']\n", + "['SSO:000004665']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['beta-glucosidase (EC 3.2.1.21)']\n", + "SSO ['SSO:000009137', 'SSO:000027090']\n", + "['SSO:000009137', 'SSO:000027090']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)']\n", + "SSO ['SSO:000005495', 'SSO:000009848']\n", + "['SSO:000005495', 'SSO:000009848']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000034288']\n", + "['SSO:000034288']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000034287']\n", + "['SSO:000034287']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000009842', 'SSO:000034323']\n", + "['SSO:000009842', 'SSO:000034323']\n", + "RAST ['FIG01134116: hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Alcohol dehydrogenase (EC 1.1.1.1)']\n", + "SSO ['SSO:000000860']\n", + "['SSO:000000860']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glucose-6-phosphate isomerase (EC 5.3.1.9)']\n", + "SSO ['SSO:000003129']\n", + "['SSO:000003129']\n", + "RAST ['Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB']\n", + "SSO ['SSO:000016700']\n", + "['SSO:000016700']\n", + "RAST ['Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD']\n", + "SSO ['SSO:000016699']\n", + "['SSO:000016699']\n", + "RAST ['Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC']\n", + "SSO ['SSO:000009848', 'SSO:000016698']\n", + "['SSO:000009848', 'SSO:000016698']\n", + "RAST ['FIG00511300: hypothetical protein']\n", + "RAST ['Serine/threonine protein kinase PrkC, regulator of stationary phase']\n", + "SSO ['SSO:000007446', 'SSO:000022788']\n", + "['SSO:000007446', 'SSO:000022788']\n", + "RAST ['Acetyl-CoA synthetase (EC 6.2.1.1)']\n", + "SSO ['SSO:000000713']\n", + "['SSO:000000713']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['N-Acetyl-D-glucosamine ABC transport system, permease protein 1']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ATP-dependent DNA helicase RecQ']\n", + "SSO ['SSO:000000584']\n", + "['SSO:000000584']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['LacI-family transcriptional regulatory protein']\n", + "SSO ['SSO:000018819']\n", + "['SSO:000018819']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000009842', 'SSO:000034314']\n", + "['SSO:000009842', 'SSO:000034314']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)', 'Domain of unknown function']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['Trehalose utilization protein ThuA']\n", + "SSO ['SSO:000009126', 'SSO:000026174']\n", + "['SSO:000009126', 'SSO:000026174']\n", + "RAST ['Myo-inositol 2-dehydrogenase (EC 1.1.1.18)']\n", + "SSO ['SSO:000005064']\n", + "['SSO:000005064']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily']\n", + "SSO ['SSO:000034775']\n", + "['SSO:000034775']\n", + "RAST ['FIG00512287: hypothetical protein']\n", + "SSO ['SSO:000017392']\n", + "['SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Conserved protein with diacylglycerol kinase catalytic domain']\n", + "SSO ['SSO:000002270', 'SSO:000012443']\n", + "['SSO:000002270', 'SSO:000012443']\n", + "RAST ['Nodulin-related protein CC_0717']\n", + "SSO ['SSO:000009137', 'SSO:000037235']\n", + "['SSO:000009137', 'SSO:000037235']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)']\n", + "SSO ['SSO:000001995', 'SSO:000009137']\n", + "['SSO:000001995', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Isochorismatase (EC 3.3.2.1)']\n", + "SSO ['SSO:000017208']\n", + "['SSO:000017208']\n", + "RAST ['Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family']\n", + "SSO ['SSO:000034670']\n", + "['SSO:000034670']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000019235']\n", + "['SSO:000009137', 'SSO:000019235']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00511731: hypothetical protein']\n", + "SSO ['SSO:000014005']\n", + "['SSO:000014005']\n", + "RAST ['Transcriptional regulator, MarR family']\n", + "SSO ['SSO:000025935']\n", + "['SSO:000025935']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Dehydrogenase']\n", + "SSO ['SSO:000013044']\n", + "['SSO:000013044']\n", + "RAST ['Mll2313 protein']\n", + "SSO ['SSO:000009137', 'SSO:000019718']\n", + "['SSO:000009137', 'SSO:000019718']\n", + "RAST ['YpfJ protein, zinc metalloprotease superfamily']\n", + "SSO ['SSO:000008989']\n", + "['SSO:000008989']\n", + "RAST ['FIG00511865: hypothetical protein']\n", + "RAST ['Response regulator']\n", + "SSO ['SSO:000023719']\n", + "['SSO:000023719']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phosphate regulon transcriptional regulatory protein PhoB (SphR)']\n", + "SSO ['SSO:000005922']\n", + "['SSO:000005922']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative oxidoreductase']\n", + "SSO ['SSO:000020957']\n", + "['SSO:000020957']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000016591']\n", + "['SSO:000009137', 'SSO:000016591']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000013628']\n", + "['SSO:000009137', 'SSO:000013628']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['Two-component system sensor histidine kinase']\n", + "SSO ['SSO:000009137', 'SSO:000021767']\n", + "['SSO:000009137', 'SSO:000021767']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00822982: hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000015111']\n", + "['SSO:000009137', 'SSO:000015111']\n", + "RAST ['Prophage Lp2 protein 6']\n", + "SSO ['SSO:000022656', 'SSO:000024083']\n", + "['SSO:000022656', 'SSO:000024083']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Thioredoxin reductase (EC 1.8.1.9)']\n", + "SSO ['SSO:000008043', 'SSO:000037035']\n", + "['SSO:000008043', 'SSO:000037035']\n", + "RAST ['Transcriptional regulator SCO0376, Xre-family with cupin domain']\n", + "SSO ['SSO:000025841']\n", + "['SSO:000025841']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['N-acetyl-D-glucosamine ABC transporter, substrate-binding protein']\n", + "SSO ['SSO:000005089', 'SSO:000013593']\n", + "['SSO:000005089', 'SSO:000013593']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['FIG01423360: glycoside hydrolase']\n", + "SSO ['SSO:000016245', 'SSO:000017367']\n", + "['SSO:000016245', 'SSO:000017367']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000003118', 'SSO:000005624']\n", + "['SSO:000003118', 'SSO:000005624']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000034287']\n", + "['SSO:000034287']\n", + "RAST ['Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)']\n", + "SSO ['SSO:000002346']\n", + "['SSO:000002346']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000009842', 'SSO:000034323']\n", + "['SSO:000009842', 'SSO:000034323']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases']\n", + "SSO ['SSO:000012313']\n", + "['SSO:000012313']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Signal peptidase I (EC 3.4.21.89)']\n", + "SSO ['SSO:000007517']\n", + "['SSO:000007517']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)']\n", + "SSO ['SSO:000002347', 'SSO:000009842']\n", + "['SSO:000002347', 'SSO:000009842']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000034287']\n", + "['SSO:000034287']\n", + "RAST ['Dipeptide ABC transporter, permease protein DppC (TC 3.A.1.5.2)']\n", + "RAST ['Oligopeptide ABC transporter, ATP-binding protein OppD (TC 3.A.1.5.1)']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000021899']\n", + "['SSO:000009137', 'SSO:000021899']\n", + "RAST ['S-adenosylhomocysteine deaminase (EC 3.5.4.28)', 'Methylthioadenosine deaminase']\n", + "SSO ['SSO:000010559']\n", + "['SSO:000010559']\n", + "RAST ['Hydantoin racemase (EC 5.1.99.-)']\n", + "SSO ['SSO:000003497']\n", + "['SSO:000003497']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Acetyltransferase']\n", + "SSO ['SSO:000010176']\n", + "['SSO:000010176']\n", + "RAST ['Protein kinase domain of HipA', 'Toxin HigB']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Thiol peroxidase, Bcp-type (EC 1.11.1.15)']\n", + "SSO ['SSO:000008031']\n", + "['SSO:000008031']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['WhiB-like transcription regulator']\n", + "SSO ['SSO:000008953', 'SSO:000029013']\n", + "['SSO:000008953', 'SSO:000029013']\n", + "RAST ['Signal transduction histidine kinase, subgroup 2']\n", + "SSO ['SSO:000024675']\n", + "['SSO:000024675']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000030098']\n", + "['SSO:000009137', 'SSO:000030098']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000000286', 'SSO:000009137']\n", + "['SSO:000000286', 'SSO:000009137']\n", + "RAST ['Protein translocase subunit SecA']\n", + "SSO ['SSO:000006520']\n", + "['SSO:000006520']\n", + "RAST ['Ribosome hibernation promoting factor Hpf']\n", + "SSO ['SSO:000007143']\n", + "['SSO:000007143']\n", + "RAST ['Competence protein F homolog, phosphoribosyltransferase domain', 'protein YhgH required for utilization of DNA as sole source of carbon and energy']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two component system sensor histidine kinase MtrB']\n", + "SSO ['SSO:000008435']\n", + "['SSO:000008435']\n", + "RAST ['Two component system response regulator MtrA']\n", + "SSO ['SSO:000008433']\n", + "['SSO:000008433']\n", + "RAST ['FIG00761799: membrane protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative membrane protein']\n", + "SSO ['SSO:000030665']\n", + "['SSO:000030665']\n", + "RAST ['FIG00512629: secreted protein']\n", + "RAST ['FIG022979: MoxR-like ATPases']\n", + "RAST ['putative membrane protein']\n", + "SSO ['SSO:000030665']\n", + "['SSO:000030665']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474']\n", + "['SSO:000018474']\n", + "RAST ['putative membrane protein']\n", + "SSO ['SSO:000030665']\n", + "['SSO:000030665']\n", + "RAST ['Adenosylhomocysteinase (EC 3.3.1.1)']\n", + "SSO ['SSO:000000817']\n", + "['SSO:000000817']\n", + "RAST ['Copper-translocating P-type ATPase (EC 3.6.3.4)', 'Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)']\n", + "SSO ['SSO:000001777']\n", + "['SSO:000001777']\n", + "RAST ['Copper chaperone']\n", + "SSO ['SSO:000012461']\n", + "['SSO:000012461']\n", + "RAST ['Repressor CsoR of the copZA operon']\n", + "SSO ['SSO:000007011']\n", + "['SSO:000007011']\n", + "RAST ['Phosphomannomutase (EC 5.4.2.8)']\n", + "SSO ['SSO:000005992']\n", + "['SSO:000005992']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glycosyl transferase, family 2']\n", + "SSO ['SSO:000003304', 'SSO:000017392']\n", + "['SSO:000003304', 'SSO:000017392']\n", + "RAST ['Sporulation regulatory protein WhiB']\n", + "SSO ['SSO:000008953', 'SSO:000025070']\n", + "['SSO:000008953', 'SSO:000025070']\n", + "RAST ['UDP-glucose 4-epimerase (EC 5.1.3.2)']\n", + "SSO ['SSO:000008644']\n", + "['SSO:000008644']\n", + "RAST ['Transcriptional regulator, AraC family']\n", + "SSO ['SSO:000023839', 'SSO:000030098']\n", + "['SSO:000023839', 'SSO:000030098']\n", + "RAST ['Mannose-6-phosphate isomerase (EC 5.3.1.8)']\n", + "SSO ['SSO:000004712', 'SSO:000019343']\n", + "['SSO:000004712', 'SSO:000019343']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hemagglutinin-related protein']\n", + "SSO ['SSO:000009137', 'SSO:000017702']\n", + "['SSO:000009137', 'SSO:000017702']\n", + "RAST ['putative secreted hydrolase']\n", + "SSO ['SSO:000009137', 'SSO:000023580']\n", + "['SSO:000009137', 'SSO:000023580']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000030067']\n", + "['SSO:000009137', 'SSO:000030067']\n", + "RAST ['glycosyltransferase domain containing protein']\n", + "SSO ['SSO:000017392']\n", + "['SSO:000017392']\n", + "RAST ['O-antigen export system permease protein RfbD']\n", + "SSO ['SSO:000020714']\n", + "['SSO:000020714']\n", + "RAST ['Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)']\n", + "SSO ['SSO:000009848', 'SSO:000025500']\n", + "['SSO:000009848', 'SSO:000025500']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase (EC 2.4.1.289)']\n", + "SSO ['SSO:000005109', 'SSO:000030067']\n", + "['SSO:000005109', 'SSO:000030067']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glycosyl transferase, family 2']\n", + "SSO ['SSO:000003304', 'SSO:000030067']\n", + "['SSO:000003304', 'SSO:000030067']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['O-antigen acetylase']\n", + "SSO ['SSO:000010295', 'SSO:000020708']\n", + "['SSO:000010295', 'SSO:000020708']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Polysaccharide pyruvyl transferase CsaB']\n", + "SSO ['SSO:000036187']\n", + "['SSO:000036187']\n", + "RAST ['Putative transmembrane protein HieC']\n", + "SSO ['SSO:000009137', 'SSO:000023652']\n", + "['SSO:000009137', 'SSO:000023652']\n", + "RAST ['NAD(P)H oxidase']\n", + "SSO ['SSO:000005203', 'SSO:000020287']\n", + "['SSO:000005203', 'SSO:000020287']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)']\n", + "SSO ['SSO:000003126']\n", + "['SSO:000003126']\n", + "RAST ['dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)']\n", + "SSO ['SSO:000009089']\n", + "['SSO:000009089']\n", + "RAST ['Putative oxidoreductase SCO7655']\n", + "SSO ['SSO:000023480']\n", + "['SSO:000023480']\n", + "RAST ['dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)']\n", + "SSO ['SSO:000009095']\n", + "['SSO:000009095']\n", + "RAST ['dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)']\n", + "SSO ['SSO:000009090']\n", + "['SSO:000009090']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000030067']\n", + "['SSO:000009137', 'SSO:000030067']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017392']\n", + "['SSO:000009137', 'SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017392']\n", + "['SSO:000009137', 'SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000030067']\n", + "['SSO:000009137', 'SSO:000030067']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Beta-1,3-glucosyltransferase']\n", + "SSO ['SSO:000011075', 'SSO:000017392']\n", + "['SSO:000011075', 'SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010242']\n", + "['SSO:000009137', 'SSO:000010242']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Beta-1,3-glucosyltransferase']\n", + "SSO ['SSO:000009137', 'SSO:000011075']\n", + "['SSO:000009137', 'SSO:000011075']\n", + "RAST ['Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)']\n", + "SSO ['SSO:000009848', 'SSO:000025500']\n", + "['SSO:000009848', 'SSO:000025500']\n", + "RAST ['O-antigen export system permease protein RfbD']\n", + "SSO ['SSO:000020714']\n", + "['SSO:000020714']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017392']\n", + "['SSO:000009137', 'SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000030067']\n", + "['SSO:000009137', 'SSO:000030067']\n", + "RAST ['Glycosyl transferase, group 1']\n", + "SSO ['SSO:000017413']\n", + "['SSO:000017413']\n", + "RAST ['N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18)']\n", + "SSO ['SSO:000000405', 'SSO:000005147']\n", + "['SSO:000000405', 'SSO:000005147']\n", + "RAST ['N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18)']\n", + "SSO ['SSO:000000406', 'SSO:000005148']\n", + "['SSO:000000406', 'SSO:000005148']\n", + "RAST ['UDP-glucose 6-dehydrogenase (EC 1.1.1.22)']\n", + "SSO ['SSO:000008645', 'SSO:000026460']\n", + "['SSO:000008645', 'SSO:000026460']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)']\n", + "SSO ['SSO:000001243', 'SSO:000009057']\n", + "['SSO:000001243', 'SSO:000009057']\n", + "RAST ['Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)', 'Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)', 'Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)']\n", + "SSO ['SSO:000000717']\n", + "['SSO:000000717']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00511709: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component system, sensor protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['23S rRNA methyltransferase/RumA']\n", + "RAST ['Septum formation protein Maf']\n", + "SSO ['SSO:000007416']\n", + "['SSO:000007416']\n", + "RAST ['Biotin carboxyl carrier protein of acetyl-CoA carboxylase', 'Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Purine nucleoside phosphorylase (EC 2.4.2.1)']\n", + "SSO ['SSO:000006580']\n", + "['SSO:000006580']\n", + "RAST ['Phosphomannomutase (EC 5.4.2.8)']\n", + "SSO ['SSO:000005992']\n", + "['SSO:000005992']\n", + "RAST ['PTS system, lactose/cellobiose specific IIB subunit']\n", + "SSO ['SSO:000021199']\n", + "['SSO:000021199']\n", + "RAST ['PTS system, mannitol-specific IIA component (EC 2.7.1.197)']\n", + "SSO ['SSO:000021204']\n", + "['SSO:000021204']\n", + "RAST ['Adenosine deaminase (EC 3.5.4.4)']\n", + "SSO ['SSO:000000811']\n", + "['SSO:000000811']\n", + "RAST ['Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)']\n", + "SSO ['SSO:000006827', 'SSO:000008066']\n", + "['SSO:000006827', 'SSO:000008066']\n", + "RAST ['Cytidine deaminase (EC 3.5.4.5)']\n", + "SSO ['SSO:000001873']\n", + "['SSO:000001873']\n", + "RAST ['ABC transporter permease protein 2 CMM_0979']\n", + "SSO ['SSO:000034223']\n", + "['SSO:000034223']\n", + "RAST ['ABC transporter permease protein 1 CMM_0978']\n", + "SSO ['SSO:000034222']\n", + "['SSO:000034222']\n", + "RAST ['ABC transporter dimeric ATP-binding protein CMM_0977']\n", + "SSO ['SSO:000009848', 'SSO:000034215']\n", + "['SSO:000009848', 'SSO:000034215']\n", + "RAST ['ABC transporter substrate-binding protein CMM_0976']\n", + "SSO ['SSO:000034226']\n", + "['SSO:000034226']\n", + "RAST ['Mannose-1-phosphate guanylyltransferase (EC 2.7.7.13)']\n", + "SSO ['SSO:000004710']\n", + "['SSO:000004710']\n", + "RAST ['Glycosyl transferase, group 1']\n", + "SSO ['SSO:000017413']\n", + "['SSO:000017413']\n", + "RAST ['Succinate dehydrogenase cytochrome b-556 subunit']\n", + "SSO ['SSO:000007776']\n", + "['SSO:000007776']\n", + "RAST ['Succinate dehydrogenase hydrophobic membrane anchor protein']\n", + "SSO ['SSO:000007780']\n", + "['SSO:000007780']\n", + "RAST ['Succinate dehydrogenase flavoprotein subunit (EC 1.3.5.1)']\n", + "SSO ['SSO:000007779']\n", + "['SSO:000007779']\n", + "RAST ['Succinate dehydrogenase iron-sulfur protein (EC 1.3.5.1)']\n", + "SSO ['SSO:000007781']\n", + "['SSO:000007781']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)']\n", + "SSO ['SSO:000019339']\n", + "['SSO:000019339']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)']\n", + "SSO ['SSO:000005964', 'SSO:000021641']\n", + "['SSO:000005964', 'SSO:000021641']\n", + "RAST ['Transcriptional repressor of the fructose operon, DeoR family']\n", + "SSO ['SSO:000008278']\n", + "['SSO:000008278']\n", + "RAST ['Phosphotransferase system, phosphocarrier protein HPr']\n", + "SSO ['SSO:000006056']\n", + "['SSO:000006056']\n", + "RAST ['Exodeoxyribonuclease III (EC 3.1.11.2)']\n", + "SSO ['SSO:000002619']\n", + "['SSO:000002619']\n", + "RAST ['Tryptophanyl-tRNA synthetase (EC 6.1.1.2)']\n", + "SSO ['SSO:000008401', 'SSO:000043791']\n", + "['SSO:000008401', 'SSO:000043791']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)', 'Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)']\n", + "RAST ['3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)', 'GTP cyclohydrolase II (EC 3.5.4.25)']\n", + "SSO ['SSO:000002985']\n", + "['SSO:000002985']\n", + "RAST ['Uncharacterized MFS-type transporter YhjE']\n", + "SSO ['SSO:000040012']\n", + "['SSO:000040012']\n", + "RAST ['Efflux ABC transporter, permease/ATP-binding protein SCO3235']\n", + "SSO ['SSO:000009848', 'SSO:000013313']\n", + "['SSO:000009848', 'SSO:000013313']\n", + "RAST ['Nicotinamidase (EC 3.5.1.19)']\n", + "SSO ['SSO:000005298', 'SSO:000018641']\n", + "['SSO:000005298', 'SSO:000018641']\n", + "RAST ['D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)']\n", + "SSO ['SSO:000001995', 'SSO:000009137']\n", + "['SSO:000001995', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Ribokinase (EC 2.7.1.15)']\n", + "SSO ['SSO:000007068']\n", + "['SSO:000007068']\n", + "RAST ['Phosphate ABC transporter, ATP-binding protein PstB (TC 3.A.1.7.1)']\n", + "SSO ['SSO:000038495']\n", + "['SSO:000038495']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000009310']\n", + "['SSO:000009137', 'SSO:000009310']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative periplasmic phosphate-binding protein PstS (Catenulisporaceae type)']\n", + "SSO ['SSO:000006714']\n", + "['SSO:000006714']\n", + "RAST ['Phosphate ABC transporter, permease protein PstA (TC 3.A.1.7.1)']\n", + "SSO ['SSO:000038496']\n", + "['SSO:000038496']\n", + "RAST ['Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1)']\n", + "SSO ['SSO:000038497']\n", + "['SSO:000038497']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['DNA polymerase III delta prime subunit (EC 2.7.7.7)']\n", + "SSO ['SSO:000002082', 'SSO:000012811']\n", + "['SSO:000002082', 'SSO:000012811']\n", + "RAST ['Thymidylate kinase (EC 2.7.4.9)']\n", + "SSO ['SSO:000008067', 'SSO:000043902']\n", + "['SSO:000008067', 'SSO:000043902']\n", + "RAST ['DNA topoisomerase I (EC 5.99.1.2)']\n", + "SSO ['SSO:000002113']\n", + "['SSO:000002113']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000009137', 'SSO:000018474']\n", + "['SSO:000009137', 'SSO:000018474']\n", + "RAST ['Flp pilus assembly protein, ATPase CpaF']\n", + "SSO ['SSO:000016854']\n", + "['SSO:000016854']\n", + "RAST ['Acetyl-CoA synthetase (EC 6.2.1.1)']\n", + "SSO ['SSO:000000713']\n", + "['SSO:000000713']\n", + "RAST ['RidA/YER057c/UK114 superfamily, group 1']\n", + "SSO ['SSO:000007169']\n", + "['SSO:000007169']\n", + "RAST ['Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)']\n", + "SSO ['SSO:000005028', 'SSO:000021054']\n", + "['SSO:000005028', 'SSO:000021054']\n", + "RAST ['Uncharacterized metalohydrolase SCO3582']\n", + "SSO ['SSO:000019538', 'SSO:000040266']\n", + "['SSO:000019538', 'SSO:000040266']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Thymidine kinase (EC 2.7.1.21)']\n", + "SSO ['SSO:000008065']\n", + "['SSO:000008065']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010002']\n", + "['SSO:000009137', 'SSO:000010002']\n", + "RAST ['Malate:quinone oxidoreductase (EC 1.1.5.4)']\n", + "SSO ['SSO:000004677']\n", + "['SSO:000004677']\n", + "RAST ['Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)']\n", + "SSO ['SSO:000001100']\n", + "['SSO:000001100']\n", + "RAST ['Aspartokinase (EC 2.7.2.4)']\n", + "SSO ['SSO:000001104', 'SSO:000042612']\n", + "['SSO:000001104', 'SSO:000042612']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Recombination protein RecR']\n", + "SSO ['SSO:000006959']\n", + "['SSO:000006959']\n", + "RAST ['DNA polymerase III subunits gamma and tau (EC 2.7.7.7)']\n", + "SSO ['SSO:000002085']\n", + "['SSO:000002085']\n", + "RAST ['T1SS secreted agglutinin RTX']\n", + "SSO ['SSO:000007880']\n", + "['SSO:000007880']\n", + "RAST ['oxidoreductase ylbE']\n", + "SSO ['SSO:000031299']\n", + "['SSO:000031299']\n", + "RAST ['Acetate kinase (EC 2.7.2.1)']\n", + "SSO ['SSO:000000670']\n", + "['SSO:000000670']\n", + "RAST ['BioD-like N-terminal domain', 'Phosphate acetyltransferase (EC 2.3.1.8)']\n", + "SSO ['SSO:000005916']\n", + "['SSO:000005916']\n", + "RAST ['Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)']\n", + "SSO ['SSO:000007150', 'SSO:000009137']\n", + "['SSO:000007150', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Multidrug resistance transporter, Bcr/CflA family']\n", + "SSO ['SSO:000020104']\n", + "['SSO:000020104']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1']\n", + "SSO ['SSO:000035056']\n", + "['SSO:000035056']\n", + "RAST ['Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6)']\n", + "SSO ['SSO:000008821', 'SSO:000025253']\n", + "['SSO:000008821', 'SSO:000025253']\n", + "RAST ['Cystathionine gamma-lyase (EC 4.4.1.1)']\n", + "SSO ['SSO:000001854', 'SSO:000001855']\n", + "['SSO:000001854', 'SSO:000001855']\n", + "RAST ['Cystathionine beta-synthase (EC 4.2.1.22)']\n", + "SSO ['SSO:000001853']\n", + "['SSO:000001853']\n", + "RAST ['Efflux ABC transporter, permease/ATP-binding protein']\n", + "SSO ['SSO:000009848', 'SSO:000011023']\n", + "['SSO:000009848', 'SSO:000011023']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['LSU ribosomal protein L7p/L12p (P1/P2)']\n", + "SSO ['SSO:000036584']\n", + "['SSO:000036584']\n", + "RAST ['LSU ribosomal protein L10p (P0)']\n", + "SSO ['SSO:000004197']\n", + "['SSO:000004197']\n", + "RAST ['Two-component system sensor histidine kinase']\n", + "SSO ['SSO:000021767']\n", + "['SSO:000021767']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['ABC-type antimicrobial peptide transport system, permease component']\n", + "SSO ['SSO:000009889']\n", + "['SSO:000009889']\n", + "RAST ['ABC-type antimicrobial peptide transport system, ATPase component']\n", + "SSO ['SSO:000009848', 'SSO:000009888']\n", + "['SSO:000009848', 'SSO:000009888']\n", + "RAST ['PQQ repeat-containing protein']\n", + "SSO ['SSO:000009137', 'SSO:000021115']\n", + "['SSO:000009137', 'SSO:000021115']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000013593', 'SSO:000034314']\n", + "['SSO:000013593', 'SSO:000034314']\n", + "RAST ['NADH-dependent dehydrogenase']\n", + "RAST ['Sugar phosphate isomerases/epimerases']\n", + "SSO ['SSO:000025246']\n", + "['SSO:000025246']\n", + "RAST ['Transcriptional regulator, ROK family']\n", + "SSO ['SSO:000025947']\n", + "['SSO:000025947']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000023917']\n", + "['SSO:000009137', 'SSO:000023917']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Zinc-type alcohol dehydrogenase-like protein']\n", + "SSO ['SSO:000041756']\n", + "['SSO:000041756']\n", + "RAST ['LSU ribosomal protein L1p (L10Ae)']\n", + "SSO ['SSO:000004237']\n", + "['SSO:000004237']\n", + "RAST ['LSU ribosomal protein L11p (L12e)']\n", + "SSO ['SSO:000004201']\n", + "['SSO:000004201']\n", + "RAST ['Transcription antitermination protein NusG']\n", + "SSO ['SSO:000008138']\n", + "['SSO:000008138']\n", + "RAST ['Protein translocase subunit SecE']\n", + "SSO ['SSO:000006524']\n", + "['SSO:000006524']\n", + "RAST ['Aspartate aminotransferase (EC 2.6.1.1)']\n", + "SSO ['SSO:000001093', 'SSO:000023742']\n", + "['SSO:000001093', 'SSO:000023742']\n", + "RAST ['UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.3.1.98)']\n", + "SSO ['SSO:000008614', 'SSO:000043015']\n", + "['SSO:000008614', 'SSO:000043015']\n", + "RAST ['(3R)-hydroxyacyl-ACP dehydratase subunit HadB']\n", + "SSO ['SSO:000000007']\n", + "['SSO:000000007']\n", + "RAST ['(3R)-hydroxyacyl-ACP dehydratase subunit HadA']\n", + "SSO ['SSO:000000006']\n", + "['SSO:000000006']\n", + "RAST ['Similar to 1,4-dihydroxy-2-naphthoate octaprenyltransferase']\n", + "RAST ['2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases']\n", + "SSO ['SSO:000009564', 'SSO:000013622']\n", + "['SSO:000009564', 'SSO:000013622']\n", + "RAST ['Methyltransferase type 12']\n", + "SSO ['SSO:000019030']\n", + "['SSO:000019030']\n", + "RAST ['Naringenin-chalcone synthase (EC 2.3.1.74)']\n", + "SSO ['SSO:000020461']\n", + "['SSO:000020461']\n", + "RAST ['Aldo/keto reductase, SCO4109 family']\n", + "SSO ['SSO:000010385']\n", + "['SSO:000010385']\n", + "RAST ['Aldo/keto reductase, SCO4109 family']\n", + "SSO ['SSO:000010385']\n", + "['SSO:000010385']\n", + "RAST ['Alpha-glucosidase (EC 3.2.1.20)']\n", + "SSO ['SSO:000000920']\n", + "['SSO:000000920']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Inositol-1-monophosphatase (EC 3.1.3.25)']\n", + "SSO ['SSO:000003916', 'SSO:000018454']\n", + "['SSO:000003916', 'SSO:000018454']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['UPF0234 protein Yitk']\n", + "SSO ['SSO:000026590']\n", + "['SSO:000026590']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Ferredoxin--NADP(+) reductase, actinobacterial (eukaryote-like) type (EC 1.18.1.2)']\n", + "SSO ['SSO:000009137', 'SSO:000016674']\n", + "['SSO:000009137', 'SSO:000016674']\n", + "RAST ['Solanesyl diphosphate synthase (EC 2.5.1.11)']\n", + "SSO ['SSO:000007617']\n", + "['SSO:000007617']\n", + "RAST ['Demethylmenaquinone methyltransferase (EC 2.1.1.163)']\n", + "SSO ['SSO:000002241']\n", + "['SSO:000002241']\n", + "RAST ['Isochorismate synthase (EC 5.4.4.2)', 'Menaquinone-specific isochorismate synthase (EC 5.4.4.2)']\n", + "RAST ['UDP-galactose-lipid carrier transferase (EC 2.-.-.-)']\n", + "SSO ['SSO:000026452']\n", + "['SSO:000026452']\n", + "RAST ['2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)']\n", + "SSO ['SSO:000000218']\n", + "['SSO:000000218']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)']\n", + "SSO ['SSO:000000035']\n", + "['SSO:000000035']\n", + "RAST ['O-antigen acetylase']\n", + "SSO ['SSO:000010242', 'SSO:000020708']\n", + "['SSO:000010242', 'SSO:000020708']\n", + "RAST ['O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)']\n", + "SSO ['SSO:000005474']\n", + "['SSO:000005474']\n", + "RAST ['Naphthoate synthase (EC 4.1.3.36)']\n", + "SSO ['SSO:000005287', 'SSO:000042583']\n", + "['SSO:000005287', 'SSO:000042583']\n", + "RAST ['O-succinylbenzoate synthase (EC 4.2.1.113)']\n", + "SSO ['SSO:000005473']\n", + "['SSO:000005473']\n", + "RAST ['Cytochrome c-type biogenesis protein CcsA/ResC']\n", + "SSO ['SSO:000001925']\n", + "['SSO:000001925']\n", + "RAST ['Ccs1/ResB-related putative cytochrome C-type biogenesis protein']\n", + "SSO ['SSO:000001458']\n", + "['SSO:000001458']\n", + "RAST ['Cytochrome c-type biogenesis protein CcdA (DsbD analog)']\n", + "SSO ['SSO:000001918', 'SSO:000012584']\n", + "['SSO:000001918', 'SSO:000012584']\n", + "RAST ['Thiol:disulfide oxidoreductase related to ResA']\n", + "SSO ['SSO:000008040']\n", + "['SSO:000008040']\n", + "RAST ['Hypothetical, related to broad specificity phosphatases COG0406']\n", + "SSO ['SSO:000003685']\n", + "['SSO:000003685']\n", + "RAST ['Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)', 'Aspartyl-tRNA synthetase (EC 6.1.1.12)']\n", + "SSO ['SSO:000042809']\n", + "['SSO:000042809']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glutaredoxin-like domain-containing protein PA3033']\n", + "SSO ['SSO:000030016', 'SSO:000035535']\n", + "['SSO:000030016', 'SSO:000035535']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Excisionase-like protein SCO3328']\n", + "SSO ['SSO:000030098']\n", + "['SSO:000030098']\n", + "RAST ['Transcriptional regulator, ArsR family']\n", + "SSO ['SSO:000010822']\n", + "['SSO:000010822']\n", + "RAST ['KtrAB potassium uptake system, integral membrane component KtrB']\n", + "SSO ['SSO:000004086']\n", + "['SSO:000004086']\n", + "RAST ['KtrAB potassium uptake system, peripheral membrane component KtrA']\n", + "SSO ['SSO:000004087']\n", + "['SSO:000004087']\n", + "RAST ['Pyrroline-5-carboxylate reductase (EC 1.5.1.2)']\n", + "SSO ['SSO:000006834']\n", + "['SSO:000006834']\n", + "RAST ['Cation transporter']\n", + "SSO ['SSO:000011997']\n", + "['SSO:000011997']\n", + "RAST ['tRNA-specific adenosine-34 deaminase (EC 3.5.4.33)']\n", + "SSO ['SSO:000009404']\n", + "['SSO:000009404']\n", + "RAST ['Uracil phosphoribosyltransferase (EC 2.4.2.9)']\n", + "SSO ['SSO:000008849']\n", + "['SSO:000008849']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['Transcriptional regulator, MarR family']\n", + "SSO ['SSO:000025935']\n", + "['SSO:000025935']\n", + "RAST ['Deoxyribodipyrimidine photolyase (EC 4.1.99.3)']\n", + "SSO ['SSO:000002250']\n", + "['SSO:000002250']\n", + "RAST ['Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily']\n", + "SSO ['SSO:000034775']\n", + "['SSO:000034775']\n", + "RAST ['N-acetyltransferase ElaA']\n", + "SSO ['SSO:000020215']\n", + "['SSO:000020215']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['Dienelactone hydrolase family protein']\n", + "SSO ['SSO:000013098']\n", + "['SSO:000013098']\n", + "RAST ['6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)']\n", + "SSO ['SSO:000000440']\n", + "['SSO:000000440']\n", + "RAST ['3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)', 'GTP cyclohydrolase II (EC 3.5.4.25)']\n", + "SSO ['SSO:000000263']\n", + "['SSO:000000263']\n", + "RAST ['Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)']\n", + "SSO ['SSO:000007065']\n", + "['SSO:000007065']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Aminodeoxychorismate lyase (EC 4.1.3.38)']\n", + "SSO ['SSO:000000956']\n", + "['SSO:000000956']\n", + "RAST ['L-serine dehydratase, beta subunit (EC 4.3.1.17)', 'L-serine dehydratase, alpha subunit (EC 4.3.1.17)']\n", + "SSO ['SSO:000043427']\n", + "['SSO:000043427']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['transporter, MMPL family']\n", + "SSO ['SSO:000033651']\n", + "['SSO:000033651']\n", + "RAST ['Cna B domain protein']\n", + "SSO ['SSO:000012279']\n", + "['SSO:000012279']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Acylphosphate phosphohydrolase (EC 3.6.1.7)']\n", + "SSO ['SSO:000010292']\n", + "['SSO:000010292']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['DNA-3-methyladenine glycosylase (EC 3.2.2.20)']\n", + "SSO ['SSO:000002129']\n", + "['SSO:000002129']\n", + "RAST ['FIG01135974: hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)']\n", + "SSO ['SSO:000003127', 'SSO:000030003']\n", + "['SSO:000003127', 'SSO:000030003']\n", + "RAST ['Kumamolysin']\n", + "SSO ['SSO:000018713']\n", + "['SSO:000018713']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Organic hydroperoxide resistance protein']\n", + "SSO ['SSO:000020822']\n", + "['SSO:000020822']\n", + "RAST ['Putative oxidoreductase SMc00968']\n", + "SSO ['SSO:000006688', 'SSO:000033847']\n", + "['SSO:000006688', 'SSO:000033847']\n", + "RAST ['Protein of unknown function DUF1304']\n", + "SSO ['SSO:000031990']\n", + "['SSO:000031990']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000039438']\n", + "['SSO:000009137', 'SSO:000039438']\n", + "RAST ['Acetyltransferase, GNAT family']\n", + "SSO ['SSO:000009631']\n", + "['SSO:000009631']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000025091']\n", + "['SSO:000009137', 'SSO:000025091']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Similar to citrate lyase beta chain, 3']\n", + "SSO ['SSO:000024720']\n", + "['SSO:000024720']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)']\n", + "SSO ['SSO:000001186']\n", + "['SSO:000001186']\n", + "RAST ['Transcriptional regulator, PadR family']\n", + "SSO ['SSO:000025945']\n", + "['SSO:000025945']\n", + "RAST ['Uncharacterized MFS-type transporter Saci_1521']\n", + "SSO ['SSO:000026922']\n", + "['SSO:000026922']\n", + "RAST ['ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)', 'NAD(P)H-hydrate epimerase (EC 5.1.99.6)']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Aspartyl aminopeptidase (EC 3.4.11.21)']\n", + "SSO ['SSO:000010866']\n", + "['SSO:000010866']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Efflux ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000013294']\n", + "['SSO:000013294']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Thioredoxin peroxidase (EC 1.11.1.15)', 'Glutathione peroxidase (EC 1.11.1.9)']\n", + "SSO ['SSO:000003224']\n", + "['SSO:000003224']\n", + "RAST ['Putative DNA-binding protein']\n", + "SSO ['SSO:000030098']\n", + "['SSO:000030098']\n", + "RAST ['Short-chain dehydrogenase']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00511840: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Magnesium and cobalt transport protein CorA']\n", + "SSO ['SSO:000004630']\n", + "['SSO:000004630']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Polyketide synthase modules and related proteins']\n", + "SSO ['SSO:000020611', 'SSO:000021862']\n", + "['SSO:000020611', 'SSO:000021862']\n", + "RAST ['Membrane alanine aminopeptidase (EC 3.4.11.2)']\n", + "SSO ['SSO:000019402']\n", + "['SSO:000019402']\n", + "RAST ['Histone acetyltransferase HPA2 and related acetyltransferases']\n", + "SSO ['SSO:000003457']\n", + "['SSO:000003457']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['Metal-dependent hydrolase']\n", + "SSO ['SSO:000009137', 'SSO:000019509']\n", + "['SSO:000009137', 'SSO:000019509']\n", + "RAST ['Transcriptional regulator, GntR family']\n", + "SSO ['SSO:000019301']\n", + "['SSO:000019301']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)', 'O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474']\n", + "['SSO:000018474']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['NAD-dependent epimerase/dehydratase']\n", + "SSO ['SSO:000009137', 'SSO:000020304']\n", + "['SSO:000009137', 'SSO:000020304']\n", + "RAST ['L-arabinose isomerase (EC 5.3.1.4)']\n", + "SSO ['SSO:000018739']\n", + "['SSO:000018739']\n", + "RAST ['L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)']\n", + "SSO ['SSO:000004170']\n", + "['SSO:000004170']\n", + "RAST ['Ribulokinase (EC 2.7.1.16)']\n", + "SSO ['SSO:000007156', 'SSO:000010090']\n", + "['SSO:000007156', 'SSO:000010090']\n", + "RAST ['Transcriptional regulator, LacI/PurR family']\n", + "RAST ['Arsenate reductase (EC 1.20.4.1)']\n", + "SSO ['SSO:000001067']\n", + "['SSO:000001067']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized methyltransferase SCO7062']\n", + "SSO ['SSO:000027369']\n", + "['SSO:000027369']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010242']\n", + "['SSO:000009137', 'SSO:000010242']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Succinoglycan biosynthesis protein exoM (EC 2.-.-.-)']\n", + "SSO ['SSO:000030067']\n", + "['SSO:000030067']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000030067']\n", + "['SSO:000009137', 'SSO:000030067']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474', 'SSO:000021890']\n", + "['SSO:000018474', 'SSO:000021890']\n", + "RAST ['GDP-mannose:glycolipid 4-beta-D-mannosyltransferase (EC 2.4.1.251)']\n", + "SSO ['SSO:000017392']\n", + "['SSO:000017392']\n", + "RAST ['Chitinase (EC 3.2.1.14)']\n", + "SSO ['SSO:000012169', 'SSO:000021090']\n", + "['SSO:000012169', 'SSO:000021090']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative aldose-1-epimerase']\n", + "SSO ['SSO:000023149', 'SSO:000034571']\n", + "['SSO:000023149', 'SSO:000034571']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['alpha-L-arabinofuranosidase (EC 3.2.1.55)']\n", + "SSO ['SSO:000010479', 'SSO:000029063']\n", + "['SSO:000010479', 'SSO:000029063']\n", + "RAST ['CarD-like transcriptional regulator']\n", + "SSO ['SSO:000011920', 'SSO:000011921']\n", + "['SSO:000011920', 'SSO:000011921']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474']\n", + "['SSO:000018474']\n", + "RAST ['NADPH:quinone oxidoreductase']\n", + "SSO ['SSO:000005246', 'SSO:000005248']\n", + "['SSO:000005246', 'SSO:000005248']\n", + "RAST ['FIG00821664: hypothetical protein']\n", + "RAST ['Mn-dependent transcriptional regulator MntR']\n", + "SSO ['SSO:000019939']\n", + "['SSO:000019939']\n", + "RAST ['Putative formate dehydrogenase oxidoreductase protein']\n", + "SSO ['SSO:000006654']\n", + "['SSO:000006654']\n", + "RAST ['Sulfur carrier protein FdhD']\n", + "SSO ['SSO:000036897']\n", + "['SSO:000036897']\n", + "RAST ['Molybdopterin biosynthesis protein MoeA']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000009137', 'SSO:000018474']\n", + "['SSO:000009137', 'SSO:000018474']\n", + "RAST ['oxidoreductase of aldo/keto reductase family, subgroup 1']\n", + "SSO ['SSO:000009198']\n", + "['SSO:000009198']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000024474']\n", + "['SSO:000009137', 'SSO:000024474']\n", + "RAST ['Serine protease, subtilase family']\n", + "SSO ['SSO:000024568']\n", + "['SSO:000024568']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246', 'SSO:000039438']\n", + "['SSO:000008246', 'SSO:000039438']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)']\n", + "SSO ['SSO:000000334']\n", + "['SSO:000000334']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1', 'Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['Alkanal monooxygenase alpha chain (EC 1.14.14.3)']\n", + "RAST ['Luciferase-like monooxygenase YhbW']\n", + "SSO ['SSO:000019077']\n", + "['SSO:000019077']\n", + "RAST ['D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)']\n", + "SSO ['SSO:000001979']\n", + "['SSO:000001979']\n", + "RAST ['Fumarylacetoacetate hydrolase family protein']\n", + "SSO ['SSO:000016921']\n", + "['SSO:000016921']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional repressor of the fructose operon, DeoR family']\n", + "SSO ['SSO:000008278']\n", + "['SSO:000008278']\n", + "RAST ['1-phosphofructokinase (EC 2.7.1.56)']\n", + "SSO ['SSO:000000049']\n", + "['SSO:000000049']\n", + "RAST ['PTS system, fructose-specific IIC component', 'PTS system, fructose-specific IIA component (EC 2.7.1.202)', 'PTS system, fructose-specific IIB component (EC 2.7.1.202)']\n", + "RAST ['Cysteine desulfurase (EC 2.8.1.7)']\n", + "SSO ['SSO:000001856']\n", + "['SSO:000001856']\n", + "RAST ['Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)']\n", + "SSO ['SSO:000006877']\n", + "['SSO:000006877']\n", + "RAST ['L-aspartate oxidase (EC 1.4.3.16)']\n", + "SSO ['SSO:000004128']\n", + "['SSO:000004128']\n", + "RAST ['Quinolinate synthetase (EC 2.5.1.72)']\n", + "SSO ['SSO:000006878']\n", + "['SSO:000006878']\n", + "RAST ['Nudix-related transcriptional regulator NrtR']\n", + "SSO ['SSO:000005457', 'SSO:000020400']\n", + "['SSO:000005457', 'SSO:000020400']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)']\n", + "SSO ['SSO:000007459', 'SSO:000043117']\n", + "['SSO:000007459', 'SSO:000043117']\n", + "RAST ['3-dehydroquinate dehydratase I (EC 4.2.1.10)']\n", + "SSO ['SSO:000000274']\n", + "['SSO:000000274']\n", + "RAST ['Transcriptional regulator, ArsR family']\n", + "SSO ['SSO:000010822']\n", + "['SSO:000010822']\n", + "RAST ['Cobalt/zinc/cadmium resistance protein CzcD']\n", + "SSO ['SSO:000011997', 'SSO:000035156']\n", + "['SSO:000011997', 'SSO:000035156']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000003308', 'SSO:000009137']\n", + "['SSO:000003308', 'SSO:000009137']\n", + "RAST ['Inosose isomerase (EC 5.3.99.-)']\n", + "SSO ['SSO:000003920', 'SSO:000025246']\n", + "['SSO:000003920', 'SSO:000025246']\n", + "RAST ['Nucleoside-diphosphate-sugar epimerases']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000025307']\n", + "['SSO:000009137', 'SSO:000025307']\n", + "RAST ['Heme-degrading protein MhuD (no EC)']\n", + "SSO ['SSO:000010702', 'SSO:000036256']\n", + "['SSO:000010702', 'SSO:000036256']\n", + "RAST ['Uncharacterized protein SCO4765']\n", + "SSO ['SSO:000019235', 'SSO:000041205']\n", + "['SSO:000019235', 'SSO:000041205']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)', 'Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)']\n", + "RAST ['Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1']\n", + "SSO ['SSO:000009137', 'SSO:000035056']\n", + "['SSO:000009137', 'SSO:000035056']\n", + "RAST ['Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2']\n", + "SSO ['SSO:000006670']\n", + "['SSO:000006670']\n", + "RAST ['Cysteine desulfurase (EC 2.8.1.7) => SufS']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010242']\n", + "['SSO:000009137', 'SSO:000010242']\n", + "RAST ['Serine acetyltransferase (EC 2.3.1.30)']\n", + "SSO ['SSO:000007423', 'SSO:000024550']\n", + "['SSO:000007423', 'SSO:000024550']\n", + "RAST ['Cysteine synthase (EC 2.5.1.47)']\n", + "SSO ['SSO:000001864']\n", + "['SSO:000001864']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['NUDIX hydrolase']\n", + "SSO ['SSO:000020400']\n", + "['SSO:000020400']\n", + "RAST ['Uncharacterized protein MSMEG_2998, DinB family']\n", + "SSO ['SSO:000013144', 'SSO:000040907']\n", + "['SSO:000013144', 'SSO:000040907']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)']\n", + "SSO ['SSO:000003257']\n", + "['SSO:000003257']\n", + "RAST ['Deoxyribonucleoside regulator DeoR (transcriptional repressor)']\n", + "RAST ['Transcriptional regulator, GntR family']\n", + "SSO ['SSO:000019301']\n", + "['SSO:000019301']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Amino acid permease in hypothetical Actinobacterial gene cluster']\n", + "SSO ['SSO:000000948', 'SSO:000000949']\n", + "['SSO:000000948', 'SSO:000000949']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative aminotransferase']\n", + "SSO ['SSO:000023177']\n", + "['SSO:000023177']\n", + "RAST ['Homoserine kinase (EC 2.7.1.39)']\n", + "SSO ['SSO:000003486', 'SSO:000021723']\n", + "['SSO:000003486', 'SSO:000021723']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)']\n", + "SSO ['SSO:000003026']\n", + "['SSO:000003026']\n", + "RAST ['Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16)']\n", + "SSO ['SSO:000007783']\n", + "['SSO:000007783']\n", + "RAST ['4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)']\n", + "SSO ['SSO:000000352']\n", + "['SSO:000000352']\n", + "RAST ['Monoamine/putrescine oxidase (EC 1.4.3.10)']\n", + "RAST ['Agmatine/putrescine antiporter, associated with agmatine catabolism']\n", + "SSO ['SSO:000000845']\n", + "['SSO:000000845']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000039438']\n", + "['SSO:000009137', 'SSO:000039438']\n", + "RAST ['Glyoxalase family protein']\n", + "SSO ['SSO:000017444']\n", + "['SSO:000017444']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000030067']\n", + "['SSO:000009137', 'SSO:000030067']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)']\n", + "SSO ['SSO:000008617']\n", + "['SSO:000008617']\n", + "RAST ['Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6)']\n", + "SSO ['SSO:000008821', 'SSO:000025253']\n", + "['SSO:000008821', 'SSO:000025253']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Tyrosine-protein kinase (EC 2.7.10.2)']\n", + "SSO ['SSO:000015062']\n", + "['SSO:000015062']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative oxidoreductase']\n", + "SSO ['SSO:000020957']\n", + "['SSO:000020957']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Beta-phosphoglucomutase (EC 5.4.2.6)']\n", + "SSO ['SSO:000001193', 'SSO:000029459']\n", + "['SSO:000001193', 'SSO:000029459']\n", + "RAST ['Trehalose phosphorylase (EC 2.4.1.64)', 'Maltose phosphorylase (EC 2.4.1.8)']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246', 'SSO:000039438']\n", + "['SSO:000008246', 'SSO:000039438']\n", + "RAST ['NAD-dependent epimerase/dehydratase']\n", + "SSO ['SSO:000020304']\n", + "['SSO:000020304']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000016939']\n", + "['SSO:000009137', 'SSO:000016939']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010702']\n", + "['SSO:000009137', 'SSO:000010702']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Resuscitation-promoting factor RpfB']\n", + "SSO ['SSO:000024091']\n", + "['SSO:000024091']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['serine protease']\n", + "SSO ['SSO:000024558']\n", + "['SSO:000024558']\n", + "RAST ['Transcriptional regulator, YafY family']\n", + "SSO ['SSO:000039739']\n", + "['SSO:000039739']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1']\n", + "SSO ['SSO:000035056']\n", + "['SSO:000035056']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Permease of the drug/metabolite transporter (DMT) superfamily']\n", + "SSO ['SSO:000021459']\n", + "['SSO:000021459']\n", + "RAST ['Transcriptional regulator, ArsR family']\n", + "SSO ['SSO:000010822']\n", + "['SSO:000010822']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Fructokinase (EC 2.7.1.4)']\n", + "SSO ['SSO:000002929', 'SSO:000029506']\n", + "['SSO:000002929', 'SSO:000029506']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, GntR family domain', 'Aspartate aminotransferase (EC 2.6.1.1)']\n", + "RAST ['Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)']\n", + "SSO ['SSO:000005028', 'SSO:000021298']\n", + "['SSO:000005028', 'SSO:000021298']\n", + "RAST ['4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)']\n", + "SSO ['SSO:000000352']\n", + "['SSO:000000352']\n", + "RAST ['Peptidyl-tRNA hydrolase ArfB (EC 3.1.1.29)']\n", + "SSO ['SSO:000037535', 'SSO:000043229']\n", + "['SSO:000037535', 'SSO:000043229']\n", + "RAST ['Glutathione hydrolase (EC 3.4.19.13)', 'Gamma-glutamyltranspeptidase (EC 2.3.2.2)']\n", + "SSO ['SSO:000025993']\n", + "['SSO:000025993']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)']\n", + "SSO ['SSO:000007037', 'SSO:000023860']\n", + "['SSO:000007037', 'SSO:000023860']\n", + "RAST ['beta-galactosidase (EC 3.2.1.23)']\n", + "SSO ['SSO:000001182']\n", + "['SSO:000001182']\n", + "RAST ['Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)']\n", + "SSO ['SSO:000005499']\n", + "['SSO:000005499']\n", + "RAST ['Transcriptional regulator, MarR family']\n", + "SSO ['SSO:000025935']\n", + "['SSO:000025935']\n", + "RAST ['putative membrane protein']\n", + "SSO ['SSO:000009137', 'SSO:000030665']\n", + "['SSO:000009137', 'SSO:000030665']\n", + "RAST ['Aldehyde dehydrogenase (EC 1.2.1.3)']\n", + "SSO ['SSO:000000864']\n", + "['SSO:000000864']\n", + "RAST ['Phosphoenolpyruvate carboxylase (EC 4.1.1.31)']\n", + "SSO ['SSO:000005955']\n", + "['SSO:000005955']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000021119']\n", + "['SSO:000009137', 'SSO:000021119']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00512366: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Aquaporin Z']\n", + "SSO ['SSO:000001024']\n", + "['SSO:000001024']\n", + "RAST ['FIG00511803: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00512438: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Alkaline shock protein 23']\n", + "SSO ['SSO:000010418']\n", + "['SSO:000010418']\n", + "RAST ['Transcriptional regulator, AraC family']\n", + "SSO ['SSO:000023839']\n", + "['SSO:000023839']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000006900', 'SSO:000009137']\n", + "['SSO:000006900', 'SSO:000009137']\n", + "RAST ['FIG00511486: hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Radical SAM domain protein']\n", + "SSO ['SSO:000023252', 'SSO:000033054']\n", + "['SSO:000023252', 'SSO:000033054']\n", + "RAST ['NADH dehydrogenase (EC 1.6.99.3)']\n", + "SSO ['SSO:000005203', 'SSO:000037035']\n", + "['SSO:000005203', 'SSO:000037035']\n", + "RAST ['Oligo-1,6-glucosidase (EC 3.2.1.10)']\n", + "SSO ['SSO:000000920', 'SSO:000020754']\n", + "['SSO:000000920', 'SSO:000020754']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['beta-galactosidase (EC 3.2.1.23)']\n", + "SSO ['SSO:000001182']\n", + "['SSO:000001182']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034314']\n", + "['SSO:000034314']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 8, B12/iron complex)']\n", + "SSO ['SSO:000034327']\n", + "['SSO:000034327']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized UPF0750 membrane protein']\n", + "RAST [\"3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)\"]\n", + "SSO ['SSO:000000256', 'SSO:000009137']\n", + "['SSO:000000256', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glycosyl transferase, group 1']\n", + "SSO ['SSO:000017413']\n", + "['SSO:000017413']\n", + "RAST ['Aliphatic amidase AmiE (EC 3.5.1.4)']\n", + "SSO ['SSO:000000885', 'SSO:000011942']\n", + "['SSO:000000885', 'SSO:000011942']\n", + "RAST ['Putative monooxygenase']\n", + "SSO ['SSO:000023442']\n", + "['SSO:000023442']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Aliphatic amidase AmiE (EC 3.5.1.4)']\n", + "SSO ['SSO:000000885', 'SSO:000011942']\n", + "['SSO:000000885', 'SSO:000011942']\n", + "RAST ['Uncharacterized protein MSMEG_0572']\n", + "SSO ['SSO:000040900']\n", + "['SSO:000040900']\n", + "RAST ['Biotin synthase-related enzyme']\n", + "SSO ['SSO:000011156']\n", + "['SSO:000011156']\n", + "RAST ['Selenophosphate synthetase-related proteins']\n", + "SSO ['SSO:000024471']\n", + "['SSO:000024471']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['putative carboxylesterase']\n", + "SSO ['SSO:000023214']\n", + "['SSO:000023214']\n", + "RAST ['N-acetyl-D-glucosamine ABC transporter, permease protein 1']\n", + "SSO ['SSO:000005087']\n", + "['SSO:000005087']\n", + "RAST ['SN-glycerol-3-phosphate transport system permease protein UgpE (TC 3.A.1.1.3)']\n", + "SSO ['SSO:000024351']\n", + "['SSO:000024351']\n", + "RAST ['Glycerol-3-phosphate ABC transporter, substrate-binding protein UgpB']\n", + "SSO ['SSO:000013593', 'SSO:000036152']\n", + "['SSO:000013593', 'SSO:000036152']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Thiol:disulfide oxidoreductase related to ResA']\n", + "SSO ['SSO:000008040']\n", + "['SSO:000008040']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Organic hydroperoxide resistance transcriptional regulator']\n", + "SSO ['SSO:000020823']\n", + "['SSO:000020823']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Acetyltransferase, GNAT family']\n", + "SSO ['SSO:000009631']\n", + "['SSO:000009631']\n", + "RAST ['Ligand-binding SRPBCC domain protein family']\n", + "SSO ['SSO:000036613']\n", + "['SSO:000036613']\n", + "RAST ['two-component sensor']\n", + "SSO ['SSO:000024474', 'SSO:000026283']\n", + "['SSO:000024474', 'SSO:000026283']\n", + "RAST ['Two-component transcriptional response regulator, NarL/FixJ family']\n", + "SSO ['SSO:000039859']\n", + "['SSO:000039859']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Iron utilization protein']\n", + "SSO ['SSO:000018603', 'SSO:000024633']\n", + "['SSO:000018603', 'SSO:000024633']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000013593', 'SSO:000034314']\n", + "['SSO:000013593', 'SSO:000034314']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['Putative esterase']\n", + "SSO ['SSO:000009716']\n", + "['SSO:000009716']\n", + "RAST ['Sucrose-6-phosphate hydrolase (EC 3.2.1.26)']\n", + "SSO ['SSO:000007796', 'SSO:000017388']\n", + "['SSO:000007796', 'SSO:000017388']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000016939']\n", + "['SSO:000009137', 'SSO:000016939']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010002']\n", + "['SSO:000009137', 'SSO:000010002']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034314']\n", + "['SSO:000034314']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['beta-galactosidase (EC 3.2.1.23)']\n", + "SSO ['SSO:000001182']\n", + "['SSO:000001182']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, MerR family']\n", + "SSO ['SSO:000025938']\n", + "['SSO:000025938']\n", + "RAST ['Oxidoreductase homolog']\n", + "RAST ['Xylose isomerase (EC 5.3.1.5)']\n", + "SSO ['SSO:000029073']\n", + "['SSO:000029073']\n", + "RAST ['Xylulose kinase (EC 2.7.1.17)']\n", + "SSO ['SSO:000008974', 'SSO:000033834']\n", + "['SSO:000008974', 'SSO:000033834']\n", + "RAST ['Acetyl xylan esterase']\n", + "SSO ['SSO:000010156']\n", + "['SSO:000010156']\n", + "RAST ['beta-glucosidase (EC 3.2.1.21)']\n", + "SSO ['SSO:000017381', 'SSO:000027090']\n", + "['SSO:000017381', 'SSO:000027090']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000013593', 'SSO:000034314']\n", + "['SSO:000013593', 'SSO:000034314']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['Myo-inositol 2-dehydrogenase (EC 1.1.1.18)']\n", + "SSO ['SSO:000005064']\n", + "['SSO:000005064']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Galactoside O-acetyltransferase (EC 2.3.1.18)']\n", + "SSO ['SSO:000003018', 'SSO:000039286']\n", + "['SSO:000003018', 'SSO:000039286']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Nucleoside-diphosphate-sugar epimerases']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)']\n", + "SSO ['SSO:000007901', 'SSO:000025471']\n", + "['SSO:000007901', 'SSO:000025471']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Diacetyl/L-xylulose reductase (EC 1.1.1.10)']\n", + "RAST ['Pantothenate kinase (EC 2.7.1.33)']\n", + "SSO ['SSO:000005728']\n", + "['SSO:000005728']\n", + "RAST ['Multiple polyol-specific dehydrogenase (EC 1.1.1.-)']\n", + "SSO ['SSO:000020111']\n", + "['SSO:000020111']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010002']\n", + "['SSO:000009137', 'SSO:000010002']\n", + "RAST ['Putative phosphatase YfbT']\n", + "SSO ['SSO:000006725']\n", + "['SSO:000006725']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose)']\n", + "SSO ['SSO:000034277']\n", + "['SSO:000034277']\n", + "RAST ['ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose)']\n", + "SSO ['SSO:000034237']\n", + "['SSO:000034237']\n", + "RAST ['Fructose ABC transporter, ATP-binding component FrcA']\n", + "SSO ['SSO:000016897']\n", + "['SSO:000016897']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['N-acetyl-D-glucosamine ABC transporter, permease protein 1']\n", + "SSO ['SSO:000005087']\n", + "['SSO:000005087']\n", + "RAST ['N-acetyl-D-glucosamine ABC transporter, substrate-binding protein']\n", + "SSO ['SSO:000005089']\n", + "['SSO:000005089']\n", + "RAST ['oxidoreductase with transcriptional repressor domain']\n", + "SSO ['SSO:000031298']\n", + "['SSO:000031298']\n", + "RAST ['Glycerol-3-phosphate regulon repressor GlpR']\n", + "SSO ['SSO:000003259']\n", + "['SSO:000003259']\n", + "RAST ['Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)']\n", + "SSO ['SSO:000003115']\n", + "['SSO:000003115']\n", + "RAST ['Predicted N-acetyl-glucosamine kinase 2, ROK family (EC 2.7.1.59)']\n", + "SSO ['SSO:000006233']\n", + "['SSO:000006233']\n", + "RAST ['N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)']\n", + "SSO ['SSO:000005105', 'SSO:000010559']\n", + "['SSO:000005105', 'SSO:000010559']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Excinuclease ABC subunit A paralog of unknown function']\n", + "SSO ['SSO:000002610']\n", + "['SSO:000002610']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glycoprotein gp2']\n", + "SSO ['SSO:000009137', 'SSO:000017364']\n", + "['SSO:000009137', 'SSO:000017364']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000007517', 'SSO:000009137']\n", + "['SSO:000007517', 'SSO:000009137']\n", + "RAST ['Chitinase (EC 3.2.1.14)']\n", + "SSO ['SSO:000012169']\n", + "['SSO:000012169']\n", + "RAST ['Transcriptional regulator, MarR family']\n", + "SSO ['SSO:000025935']\n", + "['SSO:000025935']\n", + "RAST ['Osmosensitive K+ channel histidine kinase KdpD']\n", + "SSO ['SSO:000005525']\n", + "['SSO:000005525']\n", + "RAST ['Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)']\n", + "SSO ['SSO:000006198']\n", + "['SSO:000006198']\n", + "RAST ['Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)']\n", + "SSO ['SSO:000006197']\n", + "['SSO:000006197']\n", + "RAST ['Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)']\n", + "SSO ['SSO:000006196']\n", + "['SSO:000006196']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000006900', 'SSO:000009137']\n", + "['SSO:000006900', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010559']\n", + "['SSO:000009137', 'SSO:000010559']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Ribokinase (EC 2.7.1.15)']\n", + "SSO ['SSO:000007068']\n", + "['SSO:000007068']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000013593', 'SSO:000034314']\n", + "['SSO:000013593', 'SSO:000034314']\n", + "RAST ['Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)']\n", + "SSO ['SSO:000003115', 'SSO:000025239']\n", + "['SSO:000003115', 'SSO:000025239']\n", + "RAST ['Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)']\n", + "SSO ['SSO:000007901']\n", + "['SSO:000007901']\n", + "RAST ['alpha-galactosidase (EC 3.2.1.22)']\n", + "SSO ['SSO:000000919']\n", + "['SSO:000000919']\n", + "RAST ['Transcriptional regulator']\n", + "SSO ['SSO:000012915']\n", + "['SSO:000012915']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000000919', 'SSO:000009137']\n", + "['SSO:000000919', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['D-arabino-3-hexulose 6-phosphate formaldehyde-lyase (EC 4.1.2.43)']\n", + "SSO ['SSO:000002010', 'SSO:000043793']\n", + "['SSO:000002010', 'SSO:000043793']\n", + "RAST ['6-phospho-3-hexuloisomerase (EC 5.3.1.27)']\n", + "SSO ['SSO:000000449']\n", + "['SSO:000000449']\n", + "RAST ['Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1']\n", + "SSO ['SSO:000035056']\n", + "['SSO:000035056']\n", + "RAST ['Transcriptional regulator, AsnC family']\n", + "SSO ['SSO:000025917']\n", + "['SSO:000025917']\n", + "RAST ['Alanine dehydrogenase (EC 1.4.1.1)']\n", + "SSO ['SSO:000000847']\n", + "['SSO:000000847']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000007517', 'SSO:000009137']\n", + "['SSO:000007517', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010002']\n", + "['SSO:000009137', 'SSO:000010002']\n", + "RAST ['Urea carboxylase-related amino acid permease']\n", + "SSO ['SSO:000000948', 'SSO:000028870']\n", + "['SSO:000000948', 'SSO:000028870']\n", + "RAST ['Allophanate hydrolase (EC 3.5.1.54)']\n", + "SSO ['SSO:000000901']\n", + "['SSO:000000901']\n", + "RAST ['Urea carboxylase (EC 6.3.4.6)']\n", + "SSO ['SSO:000008860']\n", + "['SSO:000008860']\n", + "RAST ['Urea carboxylase-related aminomethyltransferase']\n", + "SSO ['SSO:000028871']\n", + "['SSO:000028871']\n", + "RAST ['Urea carboxylase-related aminomethyltransferase']\n", + "SSO ['SSO:000028871']\n", + "['SSO:000028871']\n", + "RAST ['transcription regulator AmtR']\n", + "SSO ['SSO:000033568']\n", + "['SSO:000033568']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative membrane-associated phospholipid phosphatase, PAP2 superfamily']\n", + "SSO ['SSO:000038806']\n", + "['SSO:000038806']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Probable low-affinity inorganic phosphate transporter']\n", + "SSO ['SSO:000018447', 'SSO:000022511']\n", + "['SSO:000018447', 'SSO:000022511']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000009842']\n", + "['SSO:000009137', 'SSO:000009842']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['beta-galactosidase (EC 3.2.1.23)']\n", + "SSO ['SSO:000001182', 'SSO:000017370']\n", + "['SSO:000001182', 'SSO:000017370']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000016939']\n", + "['SSO:000009137', 'SSO:000016939']\n", + "RAST ['GDP-mannose pyrophosphatase NudK']\n", + "SSO ['SSO:000002975']\n", + "['SSO:000002975']\n", + "RAST ['Acetyltransferase, GNAT family']\n", + "SSO ['SSO:000005120', 'SSO:000009631']\n", + "['SSO:000005120', 'SSO:000009631']\n", + "RAST ['Transcriptional regulator, Xre-family with cupin domain']\n", + "SSO ['SSO:000025958']\n", + "['SSO:000025958']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['Transcriptional regulator, TetR family']\n", + "RAST ['Zinc-type alcohol dehydrogenase-like protein']\n", + "SSO ['SSO:000041756']\n", + "['SSO:000041756']\n", + "RAST ['Transcriptional regulator, MarR family']\n", + "SSO ['SSO:000025935']\n", + "['SSO:000025935']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)']\n", + "SSO ['SSO:000001979']\n", + "['SSO:000001979']\n", + "RAST ['RNA polymerase sigma-70 factor']\n", + "SSO ['SSO:000006915']\n", + "['SSO:000006915']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246', 'SSO:000039438']\n", + "['SSO:000008246', 'SSO:000039438']\n", + "RAST ['Mll5128 protein']\n", + "SSO ['SSO:000019766']\n", + "['SSO:000019766']\n", + "RAST ['Dipeptide ABC transporter, ATP-binding protein DppD (TC 3.A.1.5.2)']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['Oligopeptide ABC transporter, permease protein OppC (TC 3.A.1.5.1)']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000034287']\n", + "['SSO:000034287']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000009842', 'SSO:000034323']\n", + "['SSO:000009842', 'SSO:000034323']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000012512']\n", + "['SSO:000009137', 'SSO:000012512']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Mannose-6-phosphate isomerase']\n", + "SSO ['SSO:000004712', 'SSO:000012512']\n", + "['SSO:000004712', 'SSO:000012512']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000012972']\n", + "['SSO:000009137', 'SSO:000012972']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phenolic acid decarboxylase (EC 4.1.1.-)']\n", + "SSO ['SSO:000021578']\n", + "['SSO:000021578']\n", + "RAST ['Hydrolase, alpha/beta fold family']\n", + "SSO ['SSO:000017962', 'SSO:000035530']\n", + "['SSO:000017962', 'SSO:000035530']\n", + "RAST ['FIG00511202: hypothetical protein']\n", + "RAST ['Redox-sensing transcriptional regulator QorR']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00544679: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Probable Co/Zn/Cd efflux system membrane fusion protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196)']\n", + "SSO ['SSO:000018920']\n", + "['SSO:000018920']\n", + "RAST ['D-inositol-3-phosphate glycosyltransferase (EC 2.4.1.250)']\n", + "SSO ['SSO:000002029', 'SSO:000017392']\n", + "['SSO:000002029', 'SSO:000017392']\n", + "RAST ['Cardiolipin synthase, bacterial type ClsA']\n", + "SSO ['SSO:000035002']\n", + "['SSO:000035002']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative esterase']\n", + "SSO ['SSO:000009137', 'SSO:000009716']\n", + "['SSO:000009137', 'SSO:000009716']\n", + "RAST ['Putative large secreted protein']\n", + "SSO ['SSO:000009137', 'SSO:000023383']\n", + "['SSO:000009137', 'SSO:000023383']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017510']\n", + "['SSO:000009137', 'SSO:000017510']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Mobile element protein']\n", + "SSO ['SSO:000018202', 'SSO:000019954']\n", + "['SSO:000018202', 'SSO:000019954']\n", + "RAST ['Mobile element protein']\n", + "SSO ['SSO:000010002', 'SSO:000019954']\n", + "['SSO:000010002', 'SSO:000019954']\n", + "RAST ['Acetyltransferase, GNAT family']\n", + "SSO ['SSO:000005120', 'SSO:000009631']\n", + "['SSO:000005120', 'SSO:000009631']\n", + "RAST ['Arsenical resistance operon repressor']\n", + "SSO ['SSO:000001071']\n", + "['SSO:000001071']\n", + "RAST ['putative secreted protein']\n", + "SSO ['SSO:000030757']\n", + "['SSO:000030757']\n", + "RAST ['Arsenical resistance operon repressor', 'Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family']\n", + "SSO ['SSO:000030098']\n", + "['SSO:000030098']\n", + "RAST ['Aquaporin Z']\n", + "SSO ['SSO:000001024']\n", + "['SSO:000001024']\n", + "RAST ['Putative pyridine nucleotide-disulphide oxidoreductase']\n", + "SSO ['SSO:000023547']\n", + "['SSO:000023547']\n", + "RAST ['Arsenate reductase (EC 1.20.4.1)']\n", + "SSO ['SSO:000001067']\n", + "['SSO:000001067']\n", + "RAST ['Protein of unknown function UPF0060']\n", + "SSO ['SSO:000022893']\n", + "['SSO:000022893']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000011997', 'SSO:000018474']\n", + "['SSO:000011997', 'SSO:000018474']\n", + "RAST ['Cobalt/zinc/cadmium resistance protein CzcD']\n", + "SSO ['SSO:000011997', 'SSO:000035156']\n", + "['SSO:000011997', 'SSO:000035156']\n", + "RAST ['Transcriptional regulator, ArsR family']\n", + "SSO ['SSO:000010822']\n", + "['SSO:000010822']\n", + "RAST ['Uncharacterized membrane protein, YraQ family']\n", + "SSO ['SSO:000009137', 'SSO:000027321']\n", + "['SSO:000009137', 'SSO:000027321']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cobalt/zinc/cadmium resistance protein CzcD']\n", + "SSO ['SSO:000011997', 'SSO:000035156']\n", + "['SSO:000011997', 'SSO:000035156']\n", + "RAST ['Transcriptional regulator, ArsR family']\n", + "SSO ['SSO:000010822']\n", + "['SSO:000010822']\n", + "RAST ['Replication initiation ATPase']\n", + "SSO ['SSO:000024003']\n", + "['SSO:000024003']\n", + "RAST ['Tn552 transposase']\n", + "SSO ['SSO:000008077']\n", + "['SSO:000008077']\n", + "RAST ['Phage DNA invertase']\n", + "SSO ['SSO:000021485']\n", + "['SSO:000021485']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000028867']\n", + "['SSO:000009137', 'SSO:000028867']\n", + "RAST ['C4-dicarboxylate transporter/malic acid transport protein']\n", + "SSO ['SSO:000011492']\n", + "['SSO:000011492']\n", + "RAST ['Transcriptional regulator, LysR family']\n", + "SSO ['SSO:000025403']\n", + "['SSO:000025403']\n", + "RAST ['Enolase (EC 4.2.1.11)']\n", + "SSO ['SSO:000002536', 'SSO:000043336']\n", + "['SSO:000002536', 'SSO:000043336']\n", + "RAST ['Inorganic pyrophosphatase (EC 3.6.1.1)']\n", + "SSO ['SSO:000003905', 'SSO:000043609']\n", + "['SSO:000003905', 'SSO:000043609']\n", + "RAST ['Fluoride ion transporter CrcB']\n", + "SSO ['SSO:000016856']\n", + "['SSO:000016856']\n", + "RAST ['Fluoride ion transporter CrcB']\n", + "SSO ['SSO:000016856']\n", + "['SSO:000016856']\n", + "RAST ['Phosphoglycerate mutase (EC 5.4.2.11)']\n", + "SSO ['SSO:000005972']\n", + "['SSO:000005972']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000028839']\n", + "['SSO:000009137', 'SSO:000028839']\n", + "RAST ['Resolvase domain-containing protein']\n", + "SSO ['SSO:000024023']\n", + "['SSO:000024023']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000030098']\n", + "['SSO:000009137', 'SSO:000030098']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1']\n", + "SSO ['SSO:000035056']\n", + "['SSO:000035056']\n", + "RAST ['Permease of the drug/metabolite transporter (DMT) superfamily']\n", + "SSO ['SSO:000021459']\n", + "['SSO:000021459']\n", + "RAST ['Riboflavin transporter PnuX']\n", + "SSO ['SSO:000007066', 'SSO:000020511']\n", + "['SSO:000007066', 'SSO:000020511']\n", + "RAST ['Magnesium chelatase, subunit ChlI (EC 6.6.1.1)']\n", + "SSO ['SSO:000004631', 'SSO:000004632']\n", + "['SSO:000004631', 'SSO:000004632']\n", + "RAST ['FIG019045: long form Mg-chelase associated protein with vWA domain']\n", + "SSO ['SSO:000016291']\n", + "['SSO:000016291']\n", + "RAST ['Uncharacterized protien SCO1664']\n", + "SSO ['SSO:000041506']\n", + "['SSO:000041506']\n", + "RAST ['FIG00512060: hypothetical protein']\n", + "RAST ['Phosphoglycerate mutase']\n", + "SSO ['SSO:000005972']\n", + "['SSO:000005972']\n", + "RAST ['Hydrolase']\n", + "SSO ['SSO:000017946']\n", + "['SSO:000017946']\n", + "RAST ['Seryl-tRNA synthetase (EC 6.1.1.11)']\n", + "SSO ['SSO:000007452']\n", + "['SSO:000007452']\n", + "RAST ['Conserved protein with diacylglycerol kinase catalytic domain']\n", + "SSO ['SSO:000012443']\n", + "['SSO:000012443']\n", + "RAST ['Prephenate dehydratase (EC 4.2.1.51)']\n", + "SSO ['SSO:000006304']\n", + "['SSO:000006304']\n", + "RAST ['Phosphoglucomutase (EC 5.4.2.2)']\n", + "SSO ['SSO:000005967']\n", + "['SSO:000005967']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)']\n", + "SSO ['SSO:000010433']\n", + "['SSO:000010433']\n", + "RAST ['Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)']\n", + "SSO ['SSO:000000796', 'SSO:000009471']\n", + "['SSO:000000796', 'SSO:000009471']\n", + "RAST ['Short-chain dehydrogenase']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phosphoserine phosphatase (EC 3.1.3.3)']\n", + "SSO ['SSO:000006051']\n", + "['SSO:000006051']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG022979: MoxR-like ATPases']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000011545']\n", + "['SSO:000009137', 'SSO:000011545']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['NADH-FMN oxidoreductase']\n", + "SSO ['SSO:000005216']\n", + "['SSO:000005216']\n", + "RAST ['DNA modification methyltransferase']\n", + "SSO ['SSO:000012793', 'SSO:000024791']\n", + "['SSO:000012793', 'SSO:000024791']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000005120', 'SSO:000009137']\n", + "['SSO:000005120', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Lipoate-protein ligase A']\n", + "SSO ['SSO:000004465', 'SSO:000036636']\n", + "['SSO:000004465', 'SSO:000036636']\n", + "RAST ['Lysophospholipase (EC 3.1.1.5)', 'Monoglyceride lipase (EC 3.1.1.23)']\n", + "SSO ['SSO:000035530']\n", + "['SSO:000035530']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component system sensor histidine kinase']\n", + "SSO ['SSO:000021767']\n", + "['SSO:000021767']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['DNA for SgaA, complete cds']\n", + "SSO ['SSO:000012755', 'SSO:000029864']\n", + "['SSO:000012755', 'SSO:000029864']\n", + "RAST ['Protein containing transglutaminase-like domain, putative cysteine protease']\n", + "SSO ['SSO:000022762', 'SSO:000033632']\n", + "['SSO:000022762', 'SSO:000033632']\n", + "RAST ['Protein containing domains DUF403']\n", + "SSO ['SSO:000022757']\n", + "['SSO:000022757']\n", + "RAST ['Protein containing domains DUF404, DUF407']\n", + "SSO ['SSO:000022758']\n", + "['SSO:000022758']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Short-chain dehydrogenase/reductase SDR']\n", + "SSO ['SSO:000009307']\n", + "['SSO:000009307']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000002702', 'SSO:000009137']\n", + "['SSO:000002702', 'SSO:000009137']\n", + "RAST ['putative Fe-S, FMN containing oxidoreductase']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FAD:protein FMN transferase (EC 2.7.1.180)']\n", + "SSO ['SSO:000013628']\n", + "['SSO:000013628']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)']\n", + "SSO ['SSO:000001301', 'SSO:000009137']\n", + "['SSO:000001301', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['beta-glucosidase (EC 3.2.1.21)']\n", + "SSO ['SSO:000027090']\n", + "['SSO:000027090']\n", + "RAST ['Beta-hexosaminidase (EC 3.2.1.52)']\n", + "SSO ['SSO:000042124']\n", + "['SSO:000042124']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000000587', 'SSO:000009137']\n", + "['SSO:000000587', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Sarcosine oxidase( EC:1.5.3.1 )']\n", + "SSO ['SSO:000024404']\n", + "['SSO:000024404']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Non functional Dihydropteroate synthase 2']\n", + "SSO ['SSO:000002313', 'SSO:000005396']\n", + "['SSO:000002313', 'SSO:000005396']\n", + "RAST ['GTP cyclohydrolase I (EC 3.5.4.16) type 1']\n", + "SSO ['SSO:000002983', 'SSO:000017010']\n", + "['SSO:000002983', 'SSO:000017010']\n", + "RAST ['xylitol oxidase( EC:1.1.3.41 )']\n", + "SSO ['SSO:000013618']\n", + "['SSO:000013618']\n", + "RAST ['2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)']\n", + "SSO ['SSO:000000159']\n", + "['SSO:000000159']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['GCN5-related N-acetyltransferase']\n", + "SSO ['SSO:000002965']\n", + "['SSO:000002965']\n", + "RAST ['ATP-dependent DNA helicase RecQ']\n", + "SSO ['SSO:000000584']\n", + "['SSO:000000584']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Acetyltransferase, GNAT family']\n", + "SSO ['SSO:000009631']\n", + "['SSO:000009631']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Exonuclease SbcC']\n", + "SSO ['SSO:000002627']\n", + "['SSO:000002627']\n", + "RAST ['Exonuclease SbcD']\n", + "SSO ['SSO:000002626']\n", + "['SSO:000002626']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized protein Rv0443']\n", + "SSO ['SSO:000041041']\n", + "['SSO:000041041']\n", + "RAST ['DEAD-box ATP-dependent RNA helicase DeaD (= CshA) (EC 3.6.4.13)']\n", + "SSO ['SSO:000012725', 'SSO:000035396']\n", + "['SSO:000012725', 'SSO:000035396']\n", + "RAST ['Acriflavin resistance protein', 'RND multidrug efflux transporter']\n", + "RAST ['Uncharacterized amino acid permease, GabP family']\n", + "SSO ['SSO:000027035']\n", + "['SSO:000027035']\n", + "RAST ['Putative oxidoreductase']\n", + "SSO ['SSO:000037035']\n", + "['SSO:000037035']\n", + "RAST ['Uncharacterized protein SCO4088']\n", + "SSO ['SSO:000041194']\n", + "['SSO:000041194']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)']\n", + "SSO ['SSO:000006042']\n", + "['SSO:000006042']\n", + "RAST ['Amidophosphoribosyltransferase (EC 2.4.2.14)']\n", + "SSO ['SSO:000000945']\n", + "['SSO:000000945']\n", + "RAST ['Efflux ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000009848', 'SSO:000013294']\n", + "['SSO:000009848', 'SSO:000013294']\n", + "RAST ['Efflux ABC transporter, permease protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized protein MSMEG_5817']\n", + "SSO ['SSO:000009137', 'SSO:000040097']\n", + "['SSO:000009137', 'SSO:000040097']\n", + "RAST ['Phosphoribosylamine--glycine ligase (EC 6.3.4.13)']\n", + "SSO ['SSO:000006036']\n", + "['SSO:000006036']\n", + "RAST ['Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)']\n", + "SSO ['SSO:000006038']\n", + "['SSO:000006038']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Catalase KatE (EC 1.11.1.6)']\n", + "SSO ['SSO:000001444', 'SSO:000001446']\n", + "['SSO:000001444', 'SSO:000001446']\n", + "RAST ['Transcriptional regulator, Fur family']\n", + "SSO ['SSO:000025926', 'SSO:000025979']\n", + "['SSO:000025926', 'SSO:000025979']\n", + "RAST ['Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)']\n", + "SSO ['SSO:000001911']\n", + "['SSO:000001911']\n", + "RAST ['Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3)']\n", + "SSO ['SSO:000006043', 'SSO:000009218']\n", + "['SSO:000006043', 'SSO:000009218']\n", + "RAST ['Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)']\n", + "SSO ['SSO:000006044']\n", + "['SSO:000006044']\n", + "RAST ['Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3)']\n", + "SSO ['SSO:000006045']\n", + "['SSO:000006045']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Chorismate mutase I (EC 5.4.99.5)']\n", + "SSO ['SSO:000001555', 'SSO:000012210']\n", + "['SSO:000001555', 'SSO:000012210']\n", + "RAST ['Adenylosuccinate synthetase (EC 6.3.4.4)']\n", + "SSO ['SSO:000000824']\n", + "['SSO:000000824']\n", + "RAST ['Copper resistance protein CopC']\n", + "SSO ['SSO:000001768']\n", + "['SSO:000001768']\n", + "RAST ['Conserved membrane protein in copper uptake, YcnI']\n", + "SSO ['SSO:000001757']\n", + "['SSO:000001757']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)', 'Copper resistance protein CopD']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Na+/H+ antiporter']\n", + "SSO ['SSO:000005278']\n", + "['SSO:000005278']\n", + "RAST ['Fluoride ion transporter CrcB']\n", + "SSO ['SSO:000016856']\n", + "['SSO:000016856']\n", + "RAST ['Fluoride ion transporter CrcB']\n", + "SSO ['SSO:000016856']\n", + "['SSO:000016856']\n", + "RAST [\"RNA-2',3'-PO4:RNA-5'-OH ligase\"]\n", + "SSO ['SSO:000006926']\n", + "['SSO:000006926']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00512505: hypothetical protein']\n", + "SSO ['SSO:000014008']\n", + "['SSO:000014008']\n", + "RAST ['Alpha-D-GlcNAc alpha-1,2-L-rhamnosyltransferase (EC 2.4.1.-)']\n", + "SSO ['SSO:000010474', 'SSO:000017392']\n", + "['SSO:000010474', 'SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010295']\n", + "['SSO:000009137', 'SSO:000010295']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Tyrosine-protein kinase (EC 2.7.10.2)']\n", + "SSO ['SSO:000015062']\n", + "['SSO:000015062']\n", + "RAST ['Glycosyltransferase']\n", + "SSO ['SSO:000017392']\n", + "['SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010242']\n", + "['SSO:000009137', 'SSO:000010242']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['SpoU rRNA methylase family protein']\n", + "SSO ['SSO:000023830']\n", + "['SSO:000023830']\n", + "RAST ['Hypothetical NagD-like phosphatase, Actinobacterial subfamily']\n", + "SSO ['SSO:000017510', 'SSO:000017997']\n", + "['SSO:000017510', 'SSO:000017997']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Orotate phosphoribosyltransferase (EC 2.4.2.10)']\n", + "SSO ['SSO:000005521']\n", + "['SSO:000005521']\n", + "RAST ['Exodeoxyribonuclease III (EC 3.1.11.2)']\n", + "SSO ['SSO:000002619']\n", + "['SSO:000002619']\n", + "RAST ['Auxin Efflux Carrier']\n", + "SSO ['SSO:000010896']\n", + "['SSO:000010896']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000035530']\n", + "['SSO:000009137', 'SSO:000035530']\n", + "RAST ['Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)']\n", + "SSO ['SSO:000005028', 'SSO:000009137']\n", + "['SSO:000005028', 'SSO:000009137']\n", + "RAST ['Low-specificity L-threonine aldolase (EC 4.1.2.48)']\n", + "SSO ['SSO:000004554']\n", + "['SSO:000004554']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000009703']\n", + "['SSO:000009137', 'SSO:000009703']\n", + "RAST ['Chaperone protein ClpB (ATP-dependent unfoldase)']\n", + "SSO ['SSO:000035081']\n", + "['SSO:000035081']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00511251: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['23S rRNA (guanine(1835)-N(2))-methyltransferase (EC 2.1.1.174)']\n", + "SSO ['SSO:000000232', 'SSO:000036869']\n", + "['SSO:000000232', 'SSO:000036869']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017392']\n", + "['SSO:000009137', 'SSO:000017392']\n", + "RAST ['weak similarity to aminoglycoside phosphotransferase']\n", + "SSO ['SSO:000000960']\n", + "['SSO:000000960']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010295']\n", + "['SSO:000009137', 'SSO:000010295']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010295']\n", + "['SSO:000009137', 'SSO:000010295']\n", + "RAST ['HspR, transcriptional repressor of DnaK operon']\n", + "SSO ['SSO:000003491']\n", + "['SSO:000003491']\n", + "RAST ['Chaperone protein DnaJ']\n", + "SSO ['SSO:000001503', 'SSO:000013194']\n", + "['SSO:000001503', 'SSO:000013194']\n", + "RAST ['Heat shock protein GrpE']\n", + "SSO ['SSO:000003351']\n", + "['SSO:000003351']\n", + "RAST ['Chaperone protein DnaK']\n", + "SSO ['SSO:000001504']\n", + "['SSO:000001504']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010002']\n", + "['SSO:000009137', 'SSO:000010002']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000025627']\n", + "['SSO:000009137', 'SSO:000025627']\n", + "RAST ['beta-galactosidase (EC 3.2.1.23)']\n", + "SSO ['SSO:000001182']\n", + "['SSO:000001182']\n", + "RAST ['ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000034288']\n", + "['SSO:000034288']\n", + "RAST ['Chitobiose ABC transporter, permease protein 1']\n", + "SSO ['SSO:000035093']\n", + "['SSO:000035093']\n", + "RAST ['Chitobiose ABC transporter, substrate-binding protein']\n", + "SSO ['SSO:000009842', 'SSO:000035095']\n", + "['SSO:000009842', 'SSO:000035095']\n", + "RAST ['Enhanced intracellular survival protein']\n", + "SSO ['SSO:000013414']\n", + "['SSO:000013414']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23)']\n", + "SSO ['SSO:000022440']\n", + "['SSO:000022440']\n", + "RAST ['Efflux ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000009848', 'SSO:000013294']\n", + "['SSO:000009848', 'SSO:000013294']\n", + "RAST ['Efflux ABC transporter, permease protein']\n", + "SSO ['SSO:000029859']\n", + "['SSO:000029859']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000024474']\n", + "['SSO:000009137', 'SSO:000024474']\n", + "RAST ['Two-component transcriptional response regulator, NarL/FixJ family']\n", + "SSO ['SSO:000039859']\n", + "['SSO:000039859']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Lycopene elongase (EC 2.5.1.-)']\n", + "SSO ['SSO:000019085', 'SSO:000022348']\n", + "['SSO:000019085', 'SSO:000022348']\n", + "RAST ['C50 carotenoid epsilon cyclase']\n", + "SSO ['SSO:000011494', 'SSO:000030976']\n", + "['SSO:000011494', 'SSO:000030976']\n", + "RAST ['C50 carotenoid epsilon cyclase']\n", + "SSO ['SSO:000011494', 'SSO:000030976']\n", + "['SSO:000011494', 'SSO:000030976']\n", + "RAST ['Phytoene dehydrogenase (EC 1.14.99.-)']\n", + "SSO ['SSO:000006105', 'SSO:000021770']\n", + "['SSO:000006105', 'SSO:000021770']\n", + "RAST ['Phytoene synthase (EC 2.5.1.32)']\n", + "SSO ['SSO:000006106']\n", + "['SSO:000006106']\n", + "RAST ['Geranylgeranyl diphosphate synthase (EC 2.5.1.29)']\n", + "SSO ['SSO:000003089']\n", + "['SSO:000003089']\n", + "RAST ['Isopentenyl-diphosphate Delta-isomerase (EC 5.3.3.2)']\n", + "SSO ['SSO:000004065']\n", + "['SSO:000004065']\n", + "RAST ['Xaa-Pro aminopeptidase (EC 3.4.11.9)']\n", + "SSO ['SSO:000008954']\n", + "['SSO:000008954']\n", + "RAST ['Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)']\n", + "SSO ['SSO:000005491', 'SSO:000009848']\n", + "['SSO:000005491', 'SSO:000009848']\n", + "RAST ['Oligopeptide ABC transporter, ATP-binding protein OppD (TC 3.A.1.5.1)']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['Dipeptide ABC transporter, permease protein DppC (TC 3.A.1.5.2)']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines)']\n", + "SSO ['SSO:000034287']\n", + "['SSO:000034287']\n", + "RAST ['Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)']\n", + "SSO ['SSO:000002347', 'SSO:000009842']\n", + "['SSO:000002347', 'SSO:000009842']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Deoxycytidine triphosphate deaminase (EC 3.5.4.30) (dUMP-forming)']\n", + "SSO ['SSO:000002244', 'SSO:000042518']\n", + "['SSO:000002244', 'SSO:000042518']\n", + "RAST ['Quinone oxidoreductase (EC 1.6.5.5)']\n", + "SSO ['SSO:000006879']\n", + "['SSO:000006879']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Alkaline shock protein 23']\n", + "SSO ['SSO:000010418']\n", + "['SSO:000010418']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000006900', 'SSO:000009137']\n", + "['SSO:000006900', 'SSO:000009137']\n", + "RAST ['N-formylglutamate deformylase (EC 3.5.1.68)']\n", + "SSO ['SSO:000005132', 'SSO:000009137']\n", + "['SSO:000005132', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Hydroxypyruvate isomerase (EC 5.3.1.22)']\n", + "SSO ['SSO:000017988']\n", + "['SSO:000017988']\n", + "RAST ['Myo-inositol 2-dehydrogenase (EC 1.1.1.18)']\n", + "SSO ['SSO:000005064']\n", + "['SSO:000005064']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000025246']\n", + "['SSO:000009137', 'SSO:000025246']\n", + "RAST ['Myo-inositol 2-dehydrogenase (EC 1.1.1.18)']\n", + "SSO ['SSO:000005064']\n", + "['SSO:000005064']\n", + "RAST ['Inositol transport system sugar-binding protein']\n", + "SSO ['SSO:000003915']\n", + "['SSO:000003915']\n", + "RAST ['Inositol transport system permease protein']\n", + "SSO ['SSO:000003914']\n", + "['SSO:000003914']\n", + "RAST ['Inositol transport system ATP-binding protein']\n", + "SSO ['SSO:000003913']\n", + "['SSO:000003913']\n", + "RAST ['Nitrilotriacetate monooxygenase component B (EC 1.14.13.-)']\n", + "RAST ['FMN reductase (NADPH) (EC 1.5.1.38)']\n", + "SSO ['SSO:000016585', 'SSO:000020357']\n", + "['SSO:000016585', 'SSO:000020357']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Adenine-specific DNA methyltransferase']\n", + "SSO ['SSO:000010307', 'SSO:000020170']\n", + "['SSO:000010307', 'SSO:000020170']\n", + "RAST ['Hydrolase, alpha/beta fold family']\n", + "SSO ['SSO:000017962']\n", + "['SSO:000017962']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000009848']\n", + "['SSO:000009137', 'SSO:000009848']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000013593', 'SSO:000034314']\n", + "['SSO:000013593', 'SSO:000034314']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['FIG00815390: hypothetical protein']\n", + "SSO ['SSO:000015018']\n", + "['SSO:000015018']\n", + "RAST ['Possible beta-xylosidase diverged, family 5/39 of glycosyl hydrolases and alpha-amylase C (Greek key) C-terminal domain']\n", + "SSO ['SSO:000009137', 'SSO:000021981']\n", + "['SSO:000009137', 'SSO:000021981']\n", + "RAST ['Pyridoxine 4-dehydrogenase PhxI (EC 1.1.1.65)']\n", + "SSO ['SSO:000020957', 'SSO:000038850']\n", + "['SSO:000020957', 'SSO:000038850']\n", + "RAST ['DNA-binding protein']\n", + "SSO ['SSO:000012746']\n", + "['SSO:000012746']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Amylosucrase (EC 2.4.1.4)']\n", + "SSO ['SSO:000010638']\n", + "['SSO:000010638']\n", + "RAST ['alpha-glucoside ABC transporter, permease protein AglG']\n", + "SSO ['SSO:000041803']\n", + "['SSO:000041803']\n", + "RAST ['ABC alpha-glucoside transporter, inner membrane subunit AglF']\n", + "RAST ['Alpha-glucosides-binding periplasmic protein AglE precursor']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['Two-component system sensor histidine kinase']\n", + "SSO ['SSO:000009137', 'SSO:000021767']\n", + "['SSO:000009137', 'SSO:000021767']\n", + "RAST ['DedA protein']\n", + "SSO ['SSO:000002229', 'SSO:000013035']\n", + "['SSO:000002229', 'SSO:000013035']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010727']\n", + "['SSO:000009137', 'SSO:000010727']\n", + "RAST ['Calcium/proton antiporter']\n", + "SSO ['SSO:000011863']\n", + "['SSO:000011863']\n", + "RAST ['Allantoin racemase (EC 5.1.99.3)']\n", + "SSO ['SSO:000000899', 'SSO:000009137']\n", + "['SSO:000000899', 'SSO:000009137']\n", + "RAST ['Cytosine/purine/uracil/thiamine/allantoin permease family protein']\n", + "SSO ['SSO:000001969']\n", + "['SSO:000001969']\n", + "RAST ['Transcriptional regulator, MerR family']\n", + "SSO ['SSO:000025938', 'SSO:000030098']\n", + "['SSO:000025938', 'SSO:000030098']\n", + "RAST ['2-dehydropantoate 2-reductase (EC 1.1.1.169)']\n", + "SSO ['SSO:000000151']\n", + "['SSO:000000151']\n", + "RAST ['FIG00512360: hypothetical protein']\n", + "RAST ['Endoglucanase A precursor (EC 3.2.1.4)']\n", + "SSO ['SSO:000013375']\n", + "['SSO:000013375']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Chloride channel protein']\n", + "SSO ['SSO:000012182']\n", + "['SSO:000012182']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Heme oxygenase (EC 1.14.99.3)']\n", + "SSO ['SSO:000003385']\n", + "['SSO:000003385']\n", + "RAST ['Putative helicase']\n", + "SSO ['SSO:000023342']\n", + "['SSO:000023342']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Acid phosphatase, class B']\n", + "SSO ['SSO:000009137', 'SSO:000010200']\n", + "['SSO:000009137', 'SSO:000010200']\n", + "RAST ['Saccharopine dehydrogenase and related proteins']\n", + "SSO ['SSO:000010002', 'SSO:000024388']\n", + "['SSO:000010002', 'SSO:000024388']\n", + "RAST ['Uncharacterized amino acid permease, GabP family']\n", + "SSO ['SSO:000027035']\n", + "['SSO:000027035']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative oxidoreductase']\n", + "RAST ['Copper resistance protein D']\n", + "RAST ['DNA-binding protein HU']\n", + "SSO ['SSO:000002137', 'SSO:000030860']\n", + "['SSO:000002137', 'SSO:000030860']\n", + "RAST ['SSU ribosomal protein S14p (S29e)', 'SSU ribosomal protein S14p (S29e), zinc-independent']\n", + "RAST ['LSU ribosomal protein L33p', 'LSU ribosomal protein L33p, zinc-independent']\n", + "RAST ['LSU ribosomal protein L28p', 'LSU ribosomal protein L28p, zinc-independent']\n", + "RAST ['Zinc uptake regulation protein Zur']\n", + "SSO ['SSO:000008999', 'SSO:000025979']\n", + "['SSO:000008999', 'SSO:000025979']\n", + "RAST ['Zinc ABC transporter, permease protein ZnuB']\n", + "SSO ['SSO:000029175']\n", + "['SSO:000029175']\n", + "RAST ['Zinc ABC transporter, ATP-binding protein ZnuC']\n", + "SSO ['SSO:000029173']\n", + "['SSO:000029173']\n", + "RAST ['Zinc ABC transporter, periplasmic-binding protein ZnuA']\n", + "SSO ['SSO:000042173']\n", + "['SSO:000042173']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000013035']\n", + "['SSO:000009137', 'SSO:000013035']\n", + "RAST ['Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)']\n", + "SSO ['SSO:000002292']\n", + "['SSO:000002292']\n", + "RAST ['Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)']\n", + "SSO ['SSO:000001259']\n", + "['SSO:000001259']\n", + "RAST ['Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)']\n", + "SSO ['SSO:000001258']\n", + "['SSO:000001258']\n", + "RAST ['Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)']\n", + "SSO ['SSO:000001221']\n", + "['SSO:000001221']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48)']\n", + "SSO ['SSO:000019052', 'SSO:000019054']\n", + "['SSO:000019052', 'SSO:000019054']\n", + "RAST ['SAICAR lyase (EC 4.3.2.2)', 'Adenylosuccinate lyase (EC 4.3.2.2)']\n", + "SSO ['SSO:000000823']\n", + "['SSO:000000823']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Linoleoyl-CoA desaturase (EC 1.14.19.3)']\n", + "SSO ['SSO:000018926']\n", + "['SSO:000018926']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative oxidoreductase']\n", + "RAST ['Flavodoxin reductases (ferredoxin-NADPH reductases) family 1']\n", + "SSO ['SSO:000013224', 'SSO:000020957']\n", + "['SSO:000013224', 'SSO:000020957']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, MarR family']\n", + "SSO ['SSO:000025935']\n", + "['SSO:000025935']\n", + "RAST ['Multidrug resistance transporter, Bcr/CflA family']\n", + "SSO ['SSO:000020104']\n", + "['SSO:000020104']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00512571: hypothetical protein']\n", + "SSO ['SSO:000002250']\n", + "['SSO:000002250']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, PadR family']\n", + "SSO ['SSO:000025945']\n", + "['SSO:000025945']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG01152391: hypothetical protein']\n", + "SSO ['SSO:000015960', 'SSO:000017392']\n", + "['SSO:000015960', 'SSO:000017392']\n", + "RAST ['LysR family transcriptional regulator YnfL']\n", + "SSO ['SSO:000004588']\n", + "['SSO:000004588']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uricase (urate oxidase) (EC 1.7.3.3)']\n", + "SSO ['SSO:000008875']\n", + "['SSO:000008875']\n", + "RAST ['Guanine deaminase (EC 3.5.4.3)']\n", + "SSO ['SSO:000003324']\n", + "['SSO:000003324']\n", + "RAST ['5-hydroxyisourate hydrolase (EC 3.5.2.17)']\n", + "SSO ['SSO:000000422', 'SSO:000044172']\n", + "['SSO:000000422', 'SSO:000044172']\n", + "RAST ['2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) decarboxylase (EC 4.1.1.97)']\n", + "SSO ['SSO:000000202', 'SSO:000033999']\n", + "['SSO:000000202', 'SSO:000033999']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Molybdenum cofactor cytidylyltransferase (EC 2.7.7.76)']\n", + "SSO ['SSO:000004937', 'SSO:000031196']\n", + "['SSO:000004937', 'SSO:000031196']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000013593', 'SSO:000034314']\n", + "['SSO:000013593', 'SSO:000034314']\n", + "RAST ['beta-galactosidase (EC 3.2.1.23)']\n", + "SSO ['SSO:000001182']\n", + "['SSO:000001182']\n", + "RAST ['PQQ repeat-containing protein']\n", + "SSO ['SSO:000021115']\n", + "['SSO:000021115']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['tRNA-specific adenosine-34 deaminase (EC 3.5.4.33)']\n", + "SSO ['SSO:000009404']\n", + "['SSO:000009404']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Efflux ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000013294']\n", + "['SSO:000013294']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['Oxidoreductase']\n", + "SSO ['SSO:000020957']\n", + "['SSO:000020957']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Efflux ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000013294']\n", + "['SSO:000013294']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)']\n", + "SSO ['SSO:000008958', 'SSO:000009137']\n", + "['SSO:000008958', 'SSO:000009137']\n", + "RAST ['Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)', 'Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)']\n", + "RAST ['Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family']\n", + "SSO ['SSO:000008956']\n", + "['SSO:000008956']\n", + "RAST ['Amidohydrolase']\n", + "SSO ['SSO:000010553', 'SSO:000010559']\n", + "['SSO:000010553', 'SSO:000010559']\n", + "RAST ['Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)', 'Flavodoxin reductases (ferredoxin-NADPH reductases) family 1']\n", + "SSO ['SSO:000020957']\n", + "['SSO:000020957']\n", + "RAST ['Transcriptional regulator, MerR family']\n", + "SSO ['SSO:000025938', 'SSO:000030098']\n", + "['SSO:000025938', 'SSO:000030098']\n", + "RAST ['Cytosine deaminase (EC 3.5.4.1)']\n", + "SSO ['SSO:000001967', 'SSO:000010559']\n", + "['SSO:000001967', 'SSO:000010559']\n", + "RAST ['ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron)', 'ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate)']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['Hydroxymethylpyrimidine ABC transporter, transmembrane component']\n", + "SSO ['SSO:000017984']\n", + "['SSO:000017984']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate)']\n", + "SSO ['SSO:000009137', 'SSO:000034315']\n", + "['SSO:000009137', 'SSO:000034315']\n", + "RAST ['Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD']\n", + "SSO ['SSO:000003296']\n", + "['SSO:000003296']\n", + "RAST ['Creatinine amidohydrolase (EC 3.5.2.10)']\n", + "SSO ['SSO:000012492']\n", + "['SSO:000012492']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Allantoinase (EC 3.5.2.5)']\n", + "SSO ['SSO:000000900']\n", + "['SSO:000000900']\n", + "RAST ['Putative rpiR-family transcriptional regulatory protein']\n", + "SSO ['SSO:000023576']\n", + "['SSO:000023576']\n", + "RAST ['N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)']\n", + "SSO ['SSO:000000896', 'SSO:000005130']\n", + "['SSO:000000896', 'SSO:000005130']\n", + "RAST ['Serine--pyruvate aminotransferase (EC 2.6.1.51)', 'L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)']\n", + "RAST ['Amidase']\n", + "SSO ['SSO:000010533']\n", + "['SSO:000010533']\n", + "RAST ['Acetamidase/Formamidase']\n", + "SSO ['SSO:000010145', 'SSO:000010147']\n", + "['SSO:000010145', 'SSO:000010147']\n", + "RAST ['Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)']\n", + "SSO ['SSO:000005028', 'SSO:000021298']\n", + "['SSO:000005028', 'SSO:000021298']\n", + "RAST ['FIG01121868: Possible membrane protein, Rv0205']\n", + "SSO ['SSO:000015864']\n", + "['SSO:000015864']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)']\n", + "SSO ['SSO:000004870', 'SSO:000019607']\n", + "['SSO:000004870', 'SSO:000019607']\n", + "RAST ['Methylphosphotriester-DNA--protein-cysteine S-methyltransferase (EC 2.1.1.n11)', 'DNA-3-methyladenine glycosylase II (EC 3.2.2.21)']\n", + "RAST ['Glutamine amidotransferase, class I']\n", + "SSO ['SSO:000003168']\n", + "['SSO:000003168']\n", + "RAST ['FIG01121405: hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Tyrosyl-tRNA synthetase (EC 6.1.1.1)']\n", + "SSO ['SSO:000008591', 'SSO:000043952']\n", + "['SSO:000008591', 'SSO:000043952']\n", + "RAST ['DNA-3-methyladenine glycosylase II (EC 3.2.2.21)']\n", + "SSO ['SSO:000002129', 'SSO:000002130']\n", + "['SSO:000002129', 'SSO:000002130']\n", + "RAST ['Argininosuccinate lyase (EC 4.3.2.1)']\n", + "SSO ['SSO:000001051']\n", + "['SSO:000001051']\n", + "RAST ['Ornithine carbamoyltransferase (EC 2.1.3.3)']\n", + "SSO ['SSO:000005514']\n", + "['SSO:000005514']\n", + "RAST ['N-acetylornithine aminotransferase (EC 2.6.1.11)']\n", + "SSO ['SSO:000036986', 'SSO:000042174']\n", + "['SSO:000036986', 'SSO:000042174']\n", + "RAST ['N-acetylglutamate kinase (EC 2.7.2.8)']\n", + "SSO ['SSO:000000720', 'SSO:000036092']\n", + "['SSO:000000720', 'SSO:000036092']\n", + "RAST ['Glutamate N-acetyltransferase (EC 2.3.1.35)', 'N-acetylglutamate synthase (EC 2.3.1.1)']\n", + "RAST ['N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)']\n", + "SSO ['SSO:000005097']\n", + "['SSO:000005097']\n", + "RAST ['Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)']\n", + "SSO ['SSO:000005902']\n", + "['SSO:000005902']\n", + "RAST ['Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)']\n", + "SSO ['SSO:000005899']\n", + "['SSO:000005899']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['RNA methyltransferase, TrmH family']\n", + "SSO ['SSO:000023830', 'SSO:000023833']\n", + "['SSO:000023830', 'SSO:000023833']\n", + "RAST ['LSU ribosomal protein L20p']\n", + "SSO ['SSO:000004240']\n", + "['SSO:000004240']\n", + "RAST ['LSU ribosomal protein L35p']\n", + "SSO ['SSO:000004305']\n", + "['SSO:000004305']\n", + "RAST ['Translation initiation factor 3']\n", + "SSO ['SSO:000008313', 'SSO:000033641']\n", + "['SSO:000008313', 'SSO:000033641']\n", + "RAST ['Uncharacterized protein SCO1601']\n", + "SSO ['SSO:000009137', 'SSO:000041117']\n", + "['SSO:000009137', 'SSO:000041117']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000025091']\n", + "['SSO:000009137', 'SSO:000025091']\n", + "RAST ['Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)', 'Acting phosphoribosylanthranilate isomerase (EC 5.3.1.24)']\n", + "RAST ['Imidazole glycerol phosphate synthase amidotransferase subunit HisH']\n", + "SSO ['SSO:000036369']\n", + "['SSO:000036369']\n", + "RAST ['Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)']\n", + "SSO ['SSO:000003695']\n", + "['SSO:000003695']\n", + "RAST ['Histidinol-phosphate aminotransferase (EC 2.6.1.9)']\n", + "SSO ['SSO:000003449', 'SSO:000043945']\n", + "['SSO:000003449', 'SSO:000043945']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['SOS-response repressor and protease LexA (EC 3.4.21.88)']\n", + "SSO ['SSO:000007226']\n", + "['SSO:000007226']\n", + "RAST ['Ribosome LSU-associated GTP-binding protein HflX']\n", + "SSO ['SSO:000007142']\n", + "['SSO:000007142']\n", + "RAST ['Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52)']\n", + "RAST ['Diaminopimelate epimerase (EC 5.1.1.7)']\n", + "SSO ['SSO:000002281']\n", + "['SSO:000002281']\n", + "RAST ['tRNA dimethylallyltransferase (EC 2.5.1.75)']\n", + "SSO ['SSO:000009358']\n", + "['SSO:000009358']\n", + "RAST ['tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3)']\n", + "SSO ['SSO:000009401']\n", + "['SSO:000009401']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['RecA protein']\n", + "SSO ['SSO:000006953']\n", + "['SSO:000006953']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Antitoxin HigA']\n", + "SSO ['SSO:000001018']\n", + "['SSO:000001018']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)']\n", + "SSO ['SSO:000001301']\n", + "['SSO:000001301']\n", + "RAST ['DNA translocase FtsK']\n", + "SSO ['SSO:000002128']\n", + "['SSO:000002128']\n", + "RAST ['Ribonuclease J2 (endoribonuclease in RNA processing)']\n", + "SSO ['SSO:000007087']\n", + "['SSO:000007087']\n", + "RAST ['4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)']\n", + "SSO ['SSO:000000366']\n", + "['SSO:000000366']\n", + "RAST ['Thymidylate synthase ThyX (EC 2.1.1.148)']\n", + "SSO ['SSO:000008069']\n", + "['SSO:000008069']\n", + "RAST ['Cell division inhibitor SulA']\n", + "SSO ['SSO:000035037']\n", + "['SSO:000035037']\n", + "RAST ['TPR repeat protein']\n", + "SSO ['SSO:000009137', 'SSO:000025385']\n", + "['SSO:000009137', 'SSO:000025385']\n", + "RAST ['4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)']\n", + "SSO ['SSO:000000365']\n", + "['SSO:000000365']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative phosphoglycerate mutase']\n", + "SSO ['SSO:000032783']\n", + "['SSO:000032783']\n", + "RAST ['FIG007959: peptidase, M16 family']\n", + "SSO ['SSO:000014974']\n", + "['SSO:000014974']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['Aldo/keto reductase, SCO4109 family']\n", + "SSO ['SSO:000010385']\n", + "['SSO:000010385']\n", + "RAST ['Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)']\n", + "SSO ['SSO:000006161']\n", + "['SSO:000006161']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['SSU ribosomal protein S15p (S13e)']\n", + "SSO ['SSO:000007262']\n", + "['SSO:000007262']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000028910']\n", + "['SSO:000009137', 'SSO:000028910']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474']\n", + "['SSO:000018474']\n", + "RAST ['Adenine phosphoribosyltransferase (EC 2.4.2.7)']\n", + "SSO ['SSO:000000809']\n", + "['SSO:000000809']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ATP-dependent DNA helicase']\n", + "SSO ['SSO:000010027']\n", + "['SSO:000010027']\n", + "RAST ['2,5-didehydrogluconate reductase (2-dehydro-D-gluconate-forming) (EC 1.1.1.274)']\n", + "SSO ['SSO:000000108']\n", + "['SSO:000000108']\n", + "RAST ['Peptidylprolyl isomerase, FKBP-type (EC 5.2.1.8)']\n", + "SSO ['SSO:000021415', 'SSO:000021416']\n", + "['SSO:000021415', 'SSO:000021416']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Ribonuclease BN (EC 3.1.-.-)']\n", + "SSO ['SSO:000007070']\n", + "['SSO:000007070']\n", + "RAST ['Aspartate ammonia-lyase (EC 4.3.1.1)']\n", + "SSO ['SSO:000001094']\n", + "['SSO:000001094']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ABC-type antimicrobial peptide transport system, ATPase component']\n", + "SSO ['SSO:000009848', 'SSO:000009888']\n", + "['SSO:000009848', 'SSO:000009888']\n", + "RAST ['Transcriptional regulator, PadR family']\n", + "SSO ['SSO:000025945']\n", + "['SSO:000025945']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Diacylglycerol kinase-related protein']\n", + "SSO ['SSO:000009137', 'SSO:000013076']\n", + "['SSO:000009137', 'SSO:000013076']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Probable low-affinity inorganic phosphate transporter']\n", + "SSO ['SSO:000018447', 'SSO:000022511']\n", + "['SSO:000018447', 'SSO:000022511']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Na+/H+ antiporter']\n", + "SSO ['SSO:000005278']\n", + "['SSO:000005278']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Protease II (EC 3.4.21.83)']\n", + "SSO ['SSO:000006411']\n", + "['SSO:000006411']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['uncharacterized protein probably involved in trehalose biosynthesis']\n", + "SSO ['SSO:000009137', 'SSO:000033797']\n", + "['SSO:000009137', 'SSO:000033797']\n", + "RAST ['Pyruvate dehydrogenase (quinone) (EC 1.2.5.1)']\n", + "SSO ['SSO:000006846']\n", + "['SSO:000006846']\n", + "RAST ['Mycoredoxin (EC 1.20.4.3)']\n", + "SSO ['SSO:000020158']\n", + "['SSO:000020158']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative helicase regulator']\n", + "SSO ['SSO:000012725', 'SSO:000032576']\n", + "['SSO:000012725', 'SSO:000032576']\n", + "RAST ['FAD-dependent oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000009137', 'SSO:000018474']\n", + "['SSO:000009137', 'SSO:000018474']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['DNA protection during starvation protein']\n", + "SSO ['SSO:000002094']\n", + "['SSO:000002094']\n", + "RAST ['Ferredoxin reductase']\n", + "SSO ['SSO:000016682']\n", + "['SSO:000016682']\n", + "RAST ['Gluconolactonase (EC 3.1.1.17)']\n", + "SSO ['SSO:000003109']\n", + "['SSO:000003109']\n", + "RAST ['Glucoamylase (EC 3.2.1.3)']\n", + "SSO ['SSO:000017202']\n", + "['SSO:000017202']\n", + "RAST ['N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)']\n", + "SSO ['SSO:000005105', 'SSO:000010553']\n", + "['SSO:000005105', 'SSO:000010553']\n", + "RAST ['Ku domain protein']\n", + "SSO ['SSO:000004090']\n", + "['SSO:000004090']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD']\n", + "SSO ['SSO:000000587', 'SSO:000000589']\n", + "['SSO:000000587', 'SSO:000000589']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Putative oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000029810']\n", + "['SSO:000009137', 'SSO:000029810']\n", + "RAST ['Redox-sensing transcriptional regulator QorR']\n", + "RAST ['NAD(P)H dehydrogenase (quinone) 2 (EC 1.6.5.2)']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1']\n", + "SSO ['SSO:000035056']\n", + "['SSO:000035056']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG01230293: hypothetical protein']\n", + "SSO ['SSO:000028910']\n", + "['SSO:000028910']\n", + "RAST ['Ribosomal silencing factor RsfA']\n", + "SSO ['SSO:000007134']\n", + "['SSO:000007134']\n", + "RAST ['Proteophosphoglycan 5']\n", + "SSO ['SSO:000009137', 'SSO:000022959']\n", + "['SSO:000009137', 'SSO:000022959']\n", + "RAST ['Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)']\n", + "SSO ['SSO:000005314']\n", + "['SSO:000005314']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Gamma-glutamyl phosphate reductase (EC 1.2.1.41)']\n", + "SSO ['SSO:000003030', 'SSO:000036105']\n", + "['SSO:000003030', 'SSO:000036105']\n", + "RAST ['Glutamate 5-kinase (EC 2.7.2.11)', 'RNA-binding C-terminal domain PUA']\n", + "SSO ['SSO:000003145']\n", + "['SSO:000003145']\n", + "RAST ['GTP-binding protein Obg']\n", + "SSO ['SSO:000002996']\n", + "['SSO:000002996']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Ribonuclease E (EC 3.1.26.12)']\n", + "SSO ['SSO:000007072']\n", + "['SSO:000007072']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474']\n", + "['SSO:000018474']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000025627']\n", + "['SSO:000009137', 'SSO:000025627']\n", + "RAST ['Nucleoside diphosphate kinase (EC 2.7.4.6)']\n", + "SSO ['SSO:000005425']\n", + "['SSO:000005425']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Folylpolyglutamate synthase (EC 6.3.2.17)', 'Dihydrofolate synthase (EC 6.3.2.12)']\n", + "RAST ['Isoleucyl-tRNA synthetase (EC 6.1.1.5)']\n", + "SSO ['SSO:000004056']\n", + "['SSO:000004056']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative membrane transport protein']\n", + "SSO ['SSO:000023423', 'SSO:000029525']\n", + "['SSO:000023423', 'SSO:000029525']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246', 'SSO:000039438']\n", + "['SSO:000008246', 'SSO:000039438']\n", + "RAST ['Oligopeptide ABC transporter, substrate-binding protein OppA (TC 3.A.1.5.1)']\n", + "SSO ['SSO:000009842']\n", + "['SSO:000009842']\n", + "RAST ['Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)']\n", + "SSO ['SSO:000005495']\n", + "['SSO:000005495']\n", + "RAST ['Oligopeptide ABC transporter, permease protein OppC (TC 3.A.1.5.1)']\n", + "RAST ['Dipeptide ABC transporter, ATP-binding protein DppF (TC 3.A.1.5.2)']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['L-Proline/Glycine betaine transporter ProP']\n", + "SSO ['SSO:000004114']\n", + "['SSO:000004114']\n", + "RAST ['Valyl-tRNA synthetase (EC 6.1.1.9)']\n", + "SSO ['SSO:000008905', 'SSO:000042831']\n", + "['SSO:000008905', 'SSO:000042831']\n", + "RAST ['FIG00511642: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['SAM-dependent methyltransferase']\n", + "SSO ['SSO:000007212']\n", + "['SSO:000007212']\n", + "RAST ['Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5)']\n", + "SSO ['SSO:000002348']\n", + "['SSO:000002348']\n", + "RAST ['ATP-dependent Clp protease ATP-binding subunit ClpX']\n", + "SSO ['SSO:000000564']\n", + "['SSO:000000564']\n", + "RAST ['ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)']\n", + "SSO ['SSO:000000568', 'SSO:000034403']\n", + "['SSO:000000568', 'SSO:000034403']\n", + "RAST ['ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)']\n", + "SSO ['SSO:000000568', 'SSO:000034403']\n", + "['SSO:000000568', 'SSO:000034403']\n", + "RAST ['Cell division trigger factor (EC 5.2.1.8)']\n", + "SSO ['SSO:000001481', 'SSO:000033691']\n", + "['SSO:000001481', 'SSO:000033691']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['Two-component system sensor histidine kinase']\n", + "SSO ['SSO:000009137', 'SSO:000021767']\n", + "['SSO:000009137', 'SSO:000021767']\n", + "RAST ['DNA protection during starvation protein']\n", + "SSO ['SSO:000002094']\n", + "['SSO:000002094']\n", + "RAST ['O-antigen acetylase']\n", + "SSO ['SSO:000010242', 'SSO:000020708']\n", + "['SSO:000010242', 'SSO:000020708']\n", + "RAST ['conserved protein, putative metal-dependent hydrolase']\n", + "SSO ['SSO:000010559']\n", + "['SSO:000010559']\n", + "RAST ['Transcriptional regulator']\n", + "SSO ['SSO:000012915', 'SSO:000016590']\n", + "['SSO:000012915', 'SSO:000016590']\n", + "RAST ['DNA glycosylase-like protein CMM_1460']\n", + "SSO ['SSO:000035399']\n", + "['SSO:000035399']\n", + "RAST ['Ribose-5-phosphate isomerase B (EC 5.3.1.6)']\n", + "SSO ['SSO:000007111', 'SSO:000024157']\n", + "['SSO:000007111', 'SSO:000024157']\n", + "RAST ['FIG00511786: hypothetical protein']\n", + "RAST ['Cytosine/purine/uracil/thiamine/allantoin permease family protein']\n", + "SSO ['SSO:000000898', 'SSO:000001969']\n", + "['SSO:000000898', 'SSO:000001969']\n", + "RAST ['hydrolase, putative isochorismatase']\n", + "SSO ['SSO:000030161']\n", + "['SSO:000030161']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Membrane alanine aminopeptidase N (EC 3.4.11.2)']\n", + "SSO ['SSO:000004732', 'SSO:000010610']\n", + "['SSO:000004732', 'SSO:000010610']\n", + "RAST ['Small-conductance mechanosensitive channel', 'Potassium efflux system KefA protein']\n", + "SSO ['SSO:000019394']\n", + "['SSO:000019394']\n", + "RAST ['Hemoglobin-like protein HbO']\n", + "SSO ['SSO:000003401', 'SSO:000029992']\n", + "['SSO:000003401', 'SSO:000029992']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Acyl-CoA thioesterase II (EC 3.1.2.-)']\n", + "SSO ['SSO:000000794']\n", + "['SSO:000000794']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010272']\n", + "['SSO:000009137', 'SSO:000010272']\n", + "RAST ['Energy-dependent translational throttle protein EttA']\n", + "SSO ['SSO:000002535']\n", + "['SSO:000002535']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000007565', 'SSO:000009137']\n", + "['SSO:000007565', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Peptide-methionine (S)-S-oxide reductase MsrA (EC 1.8.4.11)']\n", + "SSO ['SSO:000035652']\n", + "['SSO:000035652']\n", + "RAST ['L-glyceraldehyde 3-phosphate reductase']\n", + "SSO ['SSO:000018761']\n", + "['SSO:000018761']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474']\n", + "['SSO:000018474']\n", + "RAST ['Glycosyl transferase']\n", + "SSO ['SSO:000017392']\n", + "['SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST [\"3'-to-5' oligoribonuclease (orn)\"]\n", + "SSO ['SSO:000000260']\n", + "['SSO:000000260']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010242']\n", + "['SSO:000009137', 'SSO:000010242']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine']\n", + "SSO ['SSO:000008320']\n", + "['SSO:000008320']\n", + "RAST ['Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine']\n", + "SSO ['SSO:000002382']\n", + "['SSO:000002382']\n", + "RAST ['Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine']\n", + "SSO ['SSO:000007772', 'SSO:000009137']\n", + "['SSO:000007772', 'SSO:000009137']\n", + "RAST ['Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196)']\n", + "SSO ['SSO:000018920']\n", + "['SSO:000018920']\n", + "RAST ['Malto-oligosyltrehalose synthase (EC 5.4.99.15)']\n", + "SSO ['SSO:000004698']\n", + "['SSO:000004698']\n", + "RAST ['Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141)']\n", + "SSO ['SSO:000004699']\n", + "['SSO:000004699']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010242']\n", + "['SSO:000009137', 'SSO:000010242']\n", + "RAST ['O-antigen acetylase']\n", + "SSO ['SSO:000010242', 'SSO:000020708']\n", + "['SSO:000010242', 'SSO:000020708']\n", + "RAST ['Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)']\n", + "SSO ['SSO:000000796', 'SSO:000009471']\n", + "['SSO:000000796', 'SSO:000009471']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG01128293: hypothetical protein']\n", + "RAST ['Glycosyl transferase, group 2 family']\n", + "SSO ['SSO:000017392']\n", + "['SSO:000017392']\n", + "RAST ['Potassium channel beta chain']\n", + "RAST ['Protein yceI precursor']\n", + "RAST ['Cytochrome c oxidase polypeptide I (EC 1.9.3.1)']\n", + "SSO ['SSO:000001912', 'SSO:000009137']\n", + "['SSO:000001912', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)']\n", + "SSO ['SSO:000004543']\n", + "['SSO:000004543']\n", + "RAST ['FIG00511321: hypothetical protein']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)']\n", + "SSO ['SSO:000004543']\n", + "['SSO:000004543']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phytoene dehydrogenase and related proteins']\n", + "SSO ['SSO:000021769', 'SSO:000037035']\n", + "['SSO:000021769', 'SSO:000037035']\n", + "RAST ['Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative transmembrane protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['PhnB protein', 'putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized protien SCO2557']\n", + "SSO ['SSO:000041507']\n", + "['SSO:000041507']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)', 'Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6)']\n", + "RAST ['Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)', 'Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6)']\n", + "RAST ['Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)', 'Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6)']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['DNA ligase (NAD(+)) (EC 6.5.1.2)']\n", + "SSO ['SSO:000002073']\n", + "['SSO:000002073']\n", + "RAST ['tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13)']\n", + "SSO ['SSO:000009403']\n", + "['SSO:000009403']\n", + "RAST ['Putative transporter']\n", + "SSO ['SSO:000023662']\n", + "['SSO:000023662']\n", + "RAST ['DedA protein']\n", + "SSO ['SSO:000002229', 'SSO:000009137']\n", + "['SSO:000002229', 'SSO:000009137']\n", + "RAST ['Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66)']\n", + "SSO ['SSO:000005420']\n", + "['SSO:000005420']\n", + "RAST ['Ribonuclease PH (EC 2.7.7.56)']\n", + "SSO ['SSO:000007094']\n", + "['SSO:000007094']\n", + "RAST ['Glutamate racemase (EC 5.1.1.3)']\n", + "SSO ['SSO:000003153']\n", + "['SSO:000003153']\n", + "RAST ['Nicotinate phosphoribosyltransferase (EC 6.3.4.21)']\n", + "SSO ['SSO:000005313']\n", + "['SSO:000005313']\n", + "RAST ['FIG01050400: hypothetical protein']\n", + "SSO ['SSO:000015700']\n", + "['SSO:000015700']\n", + "RAST ['Efflux ABC transporter, permease protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Efflux ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000013294']\n", + "['SSO:000013294']\n", + "RAST ['UDP-N-acetylglucosamine pyrophosphorylase related protein']\n", + "SSO ['SSO:000026444']\n", + "['SSO:000026444']\n", + "RAST ['O-antigen export system permease protein RfbD']\n", + "SSO ['SSO:000020714']\n", + "['SSO:000020714']\n", + "RAST ['Polysaccharide ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000009848', 'SSO:000021886']\n", + "['SSO:000009848', 'SSO:000021886']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000009137', 'SSO:000018474']\n", + "['SSO:000009137', 'SSO:000018474']\n", + "RAST ['Glycosyltransferase']\n", + "SSO ['SSO:000017392', 'SSO:000030067']\n", + "['SSO:000017392', 'SSO:000030067']\n", + "RAST ['CDP-alcohol phosphatidyltransferase family protein']\n", + "SSO ['SSO:000011529', 'SSO:000025993']\n", + "['SSO:000011529', 'SSO:000025993']\n", + "RAST ['Succinoglycan biosynthesis protein ExoA']\n", + "SSO ['SSO:000030067']\n", + "['SSO:000030067']\n", + "RAST ['HtrA protease/chaperone protein']\n", + "SSO ['SSO:000017912']\n", + "['SSO:000017912']\n", + "RAST ['Aspartate aminotransferase (EC 2.6.1.1)']\n", + "SSO ['SSO:000001093']\n", + "['SSO:000001093']\n", + "RAST ['FIG003879: Predicted amidohydrolase']\n", + "SSO ['SSO:000011942', 'SSO:000013736']\n", + "['SSO:000011942', 'SSO:000013736']\n", + "RAST ['DNA polymerase III epsilon subunit (EC 2.7.7.7)']\n", + "SSO ['SSO:000002084', 'SSO:000012812']\n", + "['SSO:000002084', 'SSO:000012812']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017946']\n", + "['SSO:000009137', 'SSO:000017946']\n", + "RAST ['UPF0182 protein AF1421']\n", + "SSO ['SSO:000026568']\n", + "['SSO:000026568']\n", + "RAST ['Lon-like protease with PDZ domain']\n", + "SSO ['SSO:000004507']\n", + "['SSO:000004507']\n", + "RAST ['Uncharacterized protein SCO5199']\n", + "SSO ['SSO:000027770']\n", + "['SSO:000027770']\n", + "RAST ['Molybdopterin biosynthesis protein MoeB']\n", + "RAST ['ATP-dependent DNA helicase UvrD/PcrA, actinomycete paralog']\n", + "SSO ['SSO:000000573', 'SSO:000010054']\n", + "['SSO:000000573', 'SSO:000010054']\n", + "RAST [\"NADH pyrophosphatase (EC 3.6.1.22), decaps 5'-NAD modified RNA\"]\n", + "SSO ['SSO:000037077', 'SSO:000042577']\n", + "['SSO:000037077', 'SSO:000042577']\n", + "RAST ['putative phosphotransferase']\n", + "SSO ['SSO:000021723', 'SSO:000023527']\n", + "['SSO:000021723', 'SSO:000023527']\n", + "RAST ['ATP-dependent DNA helicase SCO5184']\n", + "SSO ['SSO:000000571', 'SSO:000010054']\n", + "['SSO:000000571', 'SSO:000010054']\n", + "RAST ['ATP-dependent DNA helicase SCO5183']\n", + "SSO ['SSO:000000570', 'SSO:000010054']\n", + "['SSO:000000570', 'SSO:000010054']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00761954: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ATP-dependent RNA helicase']\n", + "SSO ['SSO:000009996', 'SSO:000012725']\n", + "['SSO:000009996', 'SSO:000012725']\n", + "RAST ['FIG00031715: Predicted metal-dependent phosphoesterases (PHP family)']\n", + "SSO ['SSO:000021084']\n", + "['SSO:000021084']\n", + "RAST ['Conserved membrane spanning protein with endonuclease/exonuclease/phosphatase domain']\n", + "SSO ['SSO:000013400', 'SSO:000035192']\n", + "['SSO:000013400', 'SSO:000035192']\n", + "RAST ['Xaa-Pro aminopeptidase (EC 3.4.11.9)']\n", + "SSO ['SSO:000008954']\n", + "['SSO:000008954']\n", + "RAST ['Mg/Co/Ni transporter MgtE, CBS domain-containing']\n", + "SSO ['SSO:000004915']\n", + "['SSO:000004915']\n", + "RAST ['FIG00816212: Putative membrane protein']\n", + "RAST ['Mrp protein homolog']\n", + "SSO ['SSO:000004963']\n", + "['SSO:000004963']\n", + "RAST ['Transcriptional regulator, LysR family']\n", + "SSO ['SSO:000025403']\n", + "['SSO:000025403']\n", + "RAST ['Twin-arginine translocation protein TatB']\n", + "SSO ['SSO:000008424', 'SSO:000009137']\n", + "['SSO:000008424', 'SSO:000009137']\n", + "RAST ['O-methyltransferase Rv1220c']\n", + "SSO ['SSO:000036869']\n", + "['SSO:000036869']\n", + "RAST ['Uncharacterized protein MSMEG_5081']\n", + "SSO ['SSO:000040910']\n", + "['SSO:000040910']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000009137', 'SSO:000018474']\n", + "['SSO:000009137', 'SSO:000018474']\n", + "RAST ['N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)']\n", + "SSO ['SSO:000005145', 'SSO:000025206']\n", + "['SSO:000005145', 'SSO:000025206']\n", + "RAST ['2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)']\n", + "SSO ['SSO:000000074']\n", + "['SSO:000000074']\n", + "RAST ['Citrate synthase (si) (EC 2.3.3.1)']\n", + "SSO ['SSO:000001584']\n", + "['SSO:000001584']\n", + "RAST ['N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17), type 2']\n", + "SSO ['SSO:000005143', 'SSO:000042832']\n", + "['SSO:000005143', 'SSO:000042832']\n", + "RAST ['4Fe-4S ferredoxin, iron-sulfur binding']\n", + "SSO ['SSO:000000390']\n", + "['SSO:000000390']\n", + "RAST ['1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase (EC 3.5.1.103)']\n", + "SSO ['SSO:000000069']\n", + "['SSO:000000069']\n", + "RAST ['Ferrous iron transport permease EfeU']\n", + "SSO ['SSO:000002762', 'SSO:000017785']\n", + "['SSO:000002762', 'SSO:000017785']\n", + "RAST ['Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain']\n", + "SSO ['SSO:000002761']\n", + "['SSO:000002761']\n", + "RAST ['Ferrous iron transport peroxidase EfeB']\n", + "SSO ['SSO:000002764']\n", + "['SSO:000002764']\n", + "RAST ['Acylamino-acid-releasing enzyme (EC 3.4.19.1)']\n", + "SSO ['SSO:000000805']\n", + "['SSO:000000805']\n", + "RAST ['GTP-binding protein TypA/BipA']\n", + "SSO ['SSO:000002998']\n", + "['SSO:000002998']\n", + "RAST ['Dipeptide ABC transporter, ATP-binding protein DppD (TC 3.A.1.5.2)']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Oligopeptide ABC transporter, permease protein OppC (TC 3.A.1.5.1)']\n", + "RAST ['Oligopeptide ABC transporter, permease protein OppB (TC 3.A.1.5.1)']\n", + "RAST ['Oligopeptide ABC transporter, substrate-binding protein OppA (TC 3.A.1.5.1)']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474']\n", + "['SSO:000018474']\n", + "RAST ['Thiol peroxidase, Bcp-type (EC 1.11.1.15)']\n", + "SSO ['SSO:000008031', 'SSO:000021467']\n", + "['SSO:000008031', 'SSO:000021467']\n", + "RAST ['Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)']\n", + "SSO ['SSO:000003274']\n", + "['SSO:000003274']\n", + "RAST ['Glycine cleavage system H protein']\n", + "SSO ['SSO:000003268']\n", + "['SSO:000003268']\n", + "RAST ['Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)']\n", + "SSO ['SSO:000000966']\n", + "['SSO:000000966']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000025091']\n", + "['SSO:000009137', 'SSO:000025091']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Efflux ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000013294']\n", + "['SSO:000013294']\n", + "RAST ['Efflux ABC transporter, permease protein']\n", + "SSO ['SSO:000029859']\n", + "['SSO:000029859']\n", + "RAST ['Intracellular protease']\n", + "SSO ['SSO:000036415']\n", + "['SSO:000036415']\n", + "RAST ['Deoxyribose-phosphate aldolase (EC 4.1.2.4)']\n", + "SSO ['SSO:000002255']\n", + "['SSO:000002255']\n", + "RAST ['Osmosensitive K+ channel histidine kinase KdpD']\n", + "SSO ['SSO:000005525']\n", + "['SSO:000005525']\n", + "RAST ['DNA-binding response regulator KdpE']\n", + "SSO ['SSO:000002142', 'SSO:000023719']\n", + "['SSO:000002142', 'SSO:000023719']\n", + "RAST ['Class A beta-lactamase (EC 3.5.2.6)']\n", + "SSO ['SSO:000035123']\n", + "['SSO:000035123']\n", + "RAST ['Nucleoside-diphosphate-sugar epimerases']\n", + "SSO ['SSO:000020272']\n", + "['SSO:000020272']\n", + "RAST ['Bis-ABC ATPase YheS']\n", + "SSO ['SSO:000011185']\n", + "['SSO:000011185']\n", + "RAST ['Peptide-methionine (S)-S-oxide reductase MsrA (EC 1.8.4.11)']\n", + "SSO ['SSO:000035652']\n", + "['SSO:000035652']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['ABC Fe(3+) transporter, permease component']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['transport system permease protein']\n", + "SSO ['SSO:000026060']\n", + "['SSO:000026060']\n", + "RAST ['Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)']\n", + "SSO ['SSO:000001186']\n", + "['SSO:000001186']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['transcriptional regulator, MarR family']\n", + "SSO ['SSO:000025935']\n", + "['SSO:000025935']\n", + "RAST ['Uncharacterized protein, similar to the N-terminal domain of Lon protease']\n", + "SSO ['SSO:000008795']\n", + "['SSO:000008795']\n", + "RAST ['GTP-binding and nucleic acid-binding protein YchF']\n", + "SSO ['SSO:000002991']\n", + "['SSO:000002991']\n", + "RAST ['DNA polymerase III epsilon subunit (EC 2.7.7.7)']\n", + "SSO ['SSO:000002084', 'SSO:000012812']\n", + "['SSO:000002084', 'SSO:000012812']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, GntR family']\n", + "SSO ['SSO:000019301']\n", + "['SSO:000019301']\n", + "RAST ['YusQ-like protein']\n", + "SSO ['SSO:000041744']\n", + "['SSO:000041744']\n", + "RAST ['Transaldolase (EC 2.2.1.2)']\n", + "SSO ['SSO:000008135']\n", + "['SSO:000008135']\n", + "RAST ['Glyceraldehyde-3-phosphate ketol-isomerase (EC 5.3.1.1)']\n", + "SSO ['SSO:000003238', 'SSO:000025246']\n", + "['SSO:000003238', 'SSO:000025246']\n", + "RAST ['Myo-inositol 2-dehydrogenase (EC 1.1.1.18)']\n", + "SSO ['SSO:000005064']\n", + "['SSO:000005064']\n", + "RAST ['Inosose dehydratase (EC 4.2.1.44)']\n", + "SSO ['SSO:000003919']\n", + "['SSO:000003919']\n", + "RAST ['3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase (EC 3.7.1.22)']\n", + "SSO ['SSO:000034095']\n", + "['SSO:000034095']\n", + "RAST ['5-deoxy-glucuronate isomerase (EC 5.3.1.30)']\n", + "SSO ['SSO:000000420']\n", + "['SSO:000000420']\n", + "RAST ['Malonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.18)']\n", + "RAST ['5-keto-2-deoxy-D-gluconate-6 phosphate aldolase [form 2] (EC 4.1.2.29)']\n", + "SSO ['SSO:000000424', 'SSO:000009137']\n", + "['SSO:000000424', 'SSO:000009137']\n", + "RAST ['5-keto-2-deoxygluconokinase (EC 2.7.1.92)']\n", + "SSO ['SSO:000000425', 'SSO:000042917']\n", + "['SSO:000000425', 'SSO:000042917']\n", + "RAST ['DNA recombination protein RmuC']\n", + "SSO ['SSO:000002097']\n", + "['SSO:000002097']\n", + "RAST ['Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)']\n", + "SSO ['SSO:000002931']\n", + "['SSO:000002931']\n", + "RAST ['Fructose-bisphosphate aldolase class II (EC 4.1.2.13)']\n", + "SSO ['SSO:000002935']\n", + "['SSO:000002935']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.7.4)']\n", + "SSO ['SSO:000000364']\n", + "['SSO:000000364']\n", + "RAST ['Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)']\n", + "SSO ['SSO:000002623']\n", + "['SSO:000002623']\n", + "RAST ['Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)']\n", + "SSO ['SSO:000002624']\n", + "['SSO:000002624']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Carbonic anhydrase, beta class (EC 4.2.1.1)']\n", + "SSO ['SSO:000001419', 'SSO:000001421']\n", + "['SSO:000001419', 'SSO:000001421']\n", + "RAST ['Fumarate hydratase class II (EC 4.2.1.2)']\n", + "SSO ['SSO:000002952']\n", + "['SSO:000002952']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Predicted ATPase related to phosphate starvation-inducible protein PhoH']\n", + "SSO ['SSO:000021593', 'SSO:000022086']\n", + "['SSO:000021593', 'SSO:000022086']\n", + "RAST ['Cysteine desulfurase (EC 2.8.1.7)']\n", + "SSO ['SSO:000001856']\n", + "['SSO:000001856']\n", + "RAST ['(2E,6Z)-farnesyl diphosphate synthase (EC 2.5.1.68)']\n", + "SSO ['SSO:000000003']\n", + "['SSO:000000003']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG01964566: Predicted membrane protein, hemolysin III homolog']\n", + "SSO ['SSO:000016295', 'SSO:000017734']\n", + "['SSO:000016295', 'SSO:000017734']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Mycothiol S-conjugate amidase Mca']\n", + "SSO ['SSO:000005063']\n", + "['SSO:000005063']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcription elongation factor GreA']\n", + "SSO ['SSO:000008140']\n", + "['SSO:000008140']\n", + "RAST ['L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17)', 'Threonine dehydratase, catabolic (EC 4.3.1.19)']\n", + "SSO ['SSO:000042344']\n", + "['SSO:000042344']\n", + "RAST ['FIG074102: hypothetical protein']\n", + "RAST ['LemA protein']\n", + "SSO ['SSO:000018887', 'SSO:000018889']\n", + "['SSO:000018887', 'SSO:000018889']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['NADH dehydrogenase (EC 1.6.99.3)']\n", + "SSO ['SSO:000005203']\n", + "['SSO:000005203']\n", + "RAST ['Serine protease']\n", + "SSO ['SSO:000024558']\n", + "['SSO:000024558']\n", + "RAST ['FIG004853: possible toxin to DivIC']\n", + "SSO ['SSO:000013978']\n", + "['SSO:000013978']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Enolase (EC 4.2.1.11)']\n", + "SSO ['SSO:000002536', 'SSO:000043336']\n", + "['SSO:000002536', 'SSO:000043336']\n", + "RAST ['Histidyl-tRNA synthetase (EC 6.1.1.21)']\n", + "SSO ['SSO:000003450', 'SSO:000043333']\n", + "['SSO:000003450', 'SSO:000043333']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8)']\n", + "SSO ['SSO:000005427', 'SSO:000009137']\n", + "['SSO:000005427', 'SSO:000009137']\n", + "RAST ['Na+/H+ antiporter NhaA type']\n", + "SSO ['SSO:000005279', 'SSO:000020433']\n", + "['SSO:000005279', 'SSO:000020433']\n", + "RAST ['Transcription-repair coupling factor']\n", + "SSO ['SSO:000008179']\n", + "['SSO:000008179']\n", + "RAST ['Peptidyl-tRNA hydrolase (EC 3.1.1.29)']\n", + "SSO ['SSO:000005814', 'SSO:000043229']\n", + "['SSO:000005814', 'SSO:000043229']\n", + "RAST ['LSU ribosomal protein L25p']\n", + "SSO ['SSO:000004259']\n", + "['SSO:000004259']\n", + "RAST ['6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)']\n", + "SSO ['SSO:000000456']\n", + "['SSO:000000456']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010559']\n", + "['SSO:000009137', 'SSO:000010559']\n", + "RAST ['Adenosine deaminase (EC 3.5.4.4)']\n", + "SSO ['SSO:000000811']\n", + "['SSO:000000811']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Pyrimidine ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000006818', 'SSO:000009848']\n", + "['SSO:000006818', 'SSO:000009848']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate)']\n", + "SSO ['SSO:000009842', 'SSO:000034315']\n", + "['SSO:000009842', 'SSO:000034315']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases']\n", + "SSO ['SSO:000012313']\n", + "['SSO:000012313']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017510']\n", + "['SSO:000009137', 'SSO:000017510']\n", + "RAST ['Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)']\n", + "SSO ['SSO:000007113']\n", + "['SSO:000007113']\n", + "RAST ['N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23)', 'Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000020400']\n", + "['SSO:000009137', 'SSO:000020400']\n", + "RAST ['Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)']\n", + "SSO ['SSO:000005302', 'SSO:000005313']\n", + "['SSO:000005302', 'SSO:000005313']\n", + "RAST ['Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)']\n", + "SSO ['SSO:000007113']\n", + "['SSO:000007113']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component system sensor histidine kinase']\n", + "SSO ['SSO:000009137', 'SSO:000021767']\n", + "['SSO:000009137', 'SSO:000021767']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['Sorbitol dehydrogenase (EC 1.1.1.14)']\n", + "SSO ['SSO:000007620', 'SSO:000033847']\n", + "['SSO:000007620', 'SSO:000033847']\n", + "RAST ['Ferredoxin reductase']\n", + "SSO ['SSO:000016682']\n", + "['SSO:000016682']\n", + "RAST ['Putative cytochrome P450 hydroxylase']\n", + "SSO ['SSO:000012589', 'SSO:000023240']\n", + "['SSO:000012589', 'SSO:000023240']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000018641']\n", + "['SSO:000009137', 'SSO:000018641']\n", + "RAST ['Transcriptional regulator, MarR family']\n", + "SSO ['SSO:000025935']\n", + "['SSO:000025935']\n", + "RAST ['Bis-ABC ATPase Uup']\n", + "SSO ['SSO:000011183']\n", + "['SSO:000011183']\n", + "RAST ['Molybdopterin synthase catalytic subunit MoaE (EC 2.8.1.12)']\n", + "SSO ['SSO:000004945']\n", + "['SSO:000004945']\n", + "RAST ['Molybdopterin adenylyltransferase (EC 2.7.7.75)']\n", + "SSO ['SSO:000004940']\n", + "['SSO:000004940']\n", + "RAST ['Cyclic pyranopterin monophosphate synthase (EC 4.6.1.17)']\n", + "SSO ['SSO:000035240']\n", + "['SSO:000035240']\n", + "RAST ['Molybdopterin molybdenumtransferase (EC 2.10.1.1)']\n", + "SSO ['SSO:000004943']\n", + "['SSO:000004943']\n", + "RAST [\"5'-methylthioadenosine phosphorylase (EC 2.4.2.28)\"]\n", + "SSO ['SSO:000000394']\n", + "['SSO:000000394']\n", + "RAST ['NAD-dependent epimerase/dehydratase family protein']\n", + "SSO ['SSO:000020272']\n", + "['SSO:000020272']\n", + "RAST ['Phosphate regulon transcriptional regulatory protein PhoB (SphR)']\n", + "SSO ['SSO:000005922']\n", + "['SSO:000005922']\n", + "RAST ['Putative glycosyltransferase']\n", + "SSO ['SSO:000030067']\n", + "['SSO:000030067']\n", + "RAST ['Uncharacterized nucleoside diphosphate sugar transferase SCO3743']\n", + "SSO ['SSO:000040272']\n", + "['SSO:000040272']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative transmembrane protein']\n", + "RAST ['FIG00512575: hypothetical protein']\n", + "RAST ['Molybdate-binding domain of ModE']\n", + "SSO ['SSO:000004932']\n", + "['SSO:000004932']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ABC-type antimicrobial peptide transport system, permease component']\n", + "SSO ['SSO:000009889']\n", + "['SSO:000009889']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000009848']\n", + "['SSO:000009137', 'SSO:000009848']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['FIG01128404: hypothetical protein']\n", + "RAST [\"GTP 3',8-cyclase (EC 4.1.99.22)\"]\n", + "SSO ['SSO:000036014']\n", + "['SSO:000036014']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80)']\n", + "SSO ['SSO:000004948']\n", + "['SSO:000004948']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)']\n", + "SSO ['SSO:000000360', 'SSO:000043140']\n", + "['SSO:000000360', 'SSO:000043140']\n", + "RAST ['Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases', 'sulfonate monooxygenase']\n", + "RAST ['CDS_ID OB3077']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Dibenzothiophene desulfurization enzyme A']\n", + "SSO ['SSO:000013089']\n", + "['SSO:000013089']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)']\n", + "SSO ['SSO:000007229']\n", + "['SSO:000007229']\n", + "RAST ['Uncharacterized metal-dependent hydrolase YcfH']\n", + "SSO ['SSO:000040261']\n", + "['SSO:000040261']\n", + "RAST ['Methionyl-tRNA synthetase (EC 6.1.1.10)']\n", + "SSO ['SSO:000004843']\n", + "['SSO:000004843']\n", + "RAST [\"16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198)\"]\n", + "SSO ['SSO:000000053']\n", + "['SSO:000000053']\n", + "RAST ['Protein-O-mannosyltransferase']\n", + "SSO ['SSO:000022946']\n", + "['SSO:000022946']\n", + "RAST ['Uncharacterized protein YyaL']\n", + "SSO ['SSO:000025627', 'SSO:000028600']\n", + "['SSO:000025627', 'SSO:000028600']\n", + "RAST ['2-methylcitrate synthase (EC 2.3.3.5)']\n", + "SSO ['SSO:000000195']\n", + "['SSO:000000195']\n", + "RAST ['Methylisocitrate lyase (EC 4.1.3.30)']\n", + "SSO ['SSO:000004883']\n", + "['SSO:000004883']\n", + "RAST ['2-methylcitrate dehydratase (EC 4.2.1.79)']\n", + "SSO ['SSO:000000194', 'SSO:000019936']\n", + "['SSO:000000194', 'SSO:000019936']\n", + "RAST ['Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)']\n", + "SSO ['SSO:000004543']\n", + "['SSO:000004543']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ATP-dependent helicase HrpA']\n", + "SSO ['SSO:000010055']\n", + "['SSO:000010055']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000009137', 'SSO:000034314']\n", + "['SSO:000009137', 'SSO:000034314']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['alpha-L-arabinofuranosidase (EC 3.2.1.55)']\n", + "SSO ['SSO:000010479', 'SSO:000029063']\n", + "['SSO:000010479', 'SSO:000029063']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Kynureninase (EC 3.7.1.3)']\n", + "SSO ['SSO:000004091']\n", + "['SSO:000004091']\n", + "RAST ['SAM-dependent methyltransferase']\n", + "SSO ['SSO:000007212']\n", + "['SSO:000007212']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Response regulator CitB of citrate metabolism']\n", + "SSO ['SSO:000007020', 'SSO:000023719']\n", + "['SSO:000007020', 'SSO:000023719']\n", + "RAST ['Tricarboxylate transport sensor protein TctE => Citrate response regulator CitA']\n", + "SSO ['SSO:000024474']\n", + "['SSO:000024474']\n", + "RAST ['Citrate/H+ symporter of CitMHS family']\n", + "SSO ['SSO:000001589']\n", + "['SSO:000001589']\n", + "RAST ['Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)']\n", + "SSO ['SSO:000007105']\n", + "['SSO:000007105']\n", + "RAST ['Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)']\n", + "SSO ['SSO:000007104']\n", + "['SSO:000007104']\n", + "RAST ['Ribonucleotide reduction protein NrdI']\n", + "SSO ['SSO:000007107']\n", + "['SSO:000007107']\n", + "RAST ['Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib']\n", + "SSO ['SSO:000009130', 'SSO:000017300']\n", + "['SSO:000009130', 'SSO:000017300']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['oxidoreductase of aldo/keto reductase family, subgroup 1']\n", + "SSO ['SSO:000009198', 'SSO:000020957']\n", + "['SSO:000009198', 'SSO:000020957']\n", + "RAST ['Ribonuclease HI (EC 3.1.26.4)', 'Domain of unknown function DUF4440']\n", + "SSO ['SSO:000007076']\n", + "['SSO:000007076']\n", + "RAST ['Putative helicase']\n", + "SSO ['SSO:000012725', 'SSO:000023342']\n", + "['SSO:000012725', 'SSO:000023342']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['UDP-glucose 4-epimerase (EC 5.1.3.2)']\n", + "SSO ['SSO:000008644']\n", + "['SSO:000008644']\n", + "RAST ['Putative methyltransferase SCO3545']\n", + "SSO ['SSO:000023436', 'SSO:000036869']\n", + "['SSO:000023436', 'SSO:000036869']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Membrane protein']\n", + "SSO ['SSO:000009137', 'SSO:000009756']\n", + "['SSO:000009137', 'SSO:000009756']\n", + "RAST ['Ribosomal-protein-S5p-alanine acetyltransferase (EC 2.3.1.128)']\n", + "SSO ['SSO:000007140']\n", + "['SSO:000007140']\n", + "RAST ['UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)']\n", + "SSO ['SSO:000008674']\n", + "['SSO:000008674']\n", + "RAST ['5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)']\n", + "SSO ['SSO:000000421']\n", + "['SSO:000000421']\n", + "RAST ['Type I antifreeze protein']\n", + "SSO ['SSO:000026327']\n", + "['SSO:000026327']\n", + "RAST ['Large-conductance mechanosensitive channel']\n", + "SSO ['SSO:000018870']\n", + "['SSO:000018870']\n", + "RAST ['ABC-type antimicrobial peptide transport system, permease component']\n", + "SSO ['SSO:000009889']\n", + "['SSO:000009889']\n", + "RAST ['ABC-type antimicrobial peptide transport system, ATPase component']\n", + "SSO ['SSO:000009848', 'SSO:000009888']\n", + "['SSO:000009848', 'SSO:000009888']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cell division inhibitor SulA']\n", + "SSO ['SSO:000035037']\n", + "['SSO:000035037']\n", + "RAST ['Glycerol kinase (EC 2.7.1.30)']\n", + "SSO ['SSO:000003248']\n", + "['SSO:000003248']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized membrane protein, YraQ family']\n", + "SSO ['SSO:000021455', 'SSO:000027321']\n", + "['SSO:000021455', 'SSO:000027321']\n", + "RAST ['Uncharacterized membrane protein']\n", + "SSO ['SSO:000027237']\n", + "['SSO:000027237']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['beta-galactosidase (EC 3.2.1.23)']\n", + "SSO ['SSO:000001182']\n", + "['SSO:000001182']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Major facilitator family transporter YfmO']\n", + "SSO ['SSO:000019283']\n", + "['SSO:000019283']\n", + "RAST ['ABC transporter, permease protein (cluster 13, osmolytes)']\n", + "SSO ['SSO:000034272']\n", + "['SSO:000034272']\n", + "RAST ['ABC transporter, ATP-binding protein (cluster 13, osmolytes)']\n", + "SSO ['SSO:000034233']\n", + "['SSO:000034233']\n", + "RAST ['ABC transporter, permease protein (cluster 13, osmolytes)']\n", + "SSO ['SSO:000034272']\n", + "['SSO:000034272']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 13, osmolytes)']\n", + "SSO ['SSO:000034273']\n", + "['SSO:000034273']\n", + "RAST ['Phenazine biosynthesis protein PhzF like']\n", + "SSO ['SSO:000005876']\n", + "['SSO:000005876']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['protein of unknown function DUF347']\n", + "SSO ['SSO:000009137', 'SSO:000032052']\n", + "['SSO:000009137', 'SSO:000032052']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component transcriptional response regulator, OmpR family']\n", + "SSO ['SSO:000039860']\n", + "['SSO:000039860']\n", + "RAST ['DedA protein']\n", + "SSO ['SSO:000000886', 'SSO:000002229']\n", + "['SSO:000000886', 'SSO:000002229']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000009137', 'SSO:000018474']\n", + "['SSO:000009137', 'SSO:000018474']\n", + "RAST ['Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)', 'Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glycosyl transferase, group 2 family']\n", + "SSO ['SSO:000017392']\n", + "['SSO:000017392']\n", + "RAST ['Streptomyces cyclase/dehydrase']\n", + "SSO ['SSO:000025144']\n", + "['SSO:000025144']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Acyl-CoA dehydrogenase/oxidase domain protein']\n", + "SSO ['SSO:000009137', 'SSO:000010260']\n", + "['SSO:000009137', 'SSO:000010260']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glucosyl-3-phosphoglycerate phosphatase (EC 3.1.3.85)']\n", + "SSO ['SSO:000003132']\n", + "['SSO:000003132']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000012512']\n", + "['SSO:000009137', 'SSO:000012512']\n", + "RAST ['18 kDa antigen 2']\n", + "SSO ['SSO:000009495', 'SSO:000030144']\n", + "['SSO:000009495', 'SSO:000030144']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Esterase/lipase']\n", + "SSO ['SSO:000013483']\n", + "['SSO:000013483']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized protein YcgL']\n", + "SSO ['SSO:000028198']\n", + "['SSO:000028198']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246', 'SSO:000039438']\n", + "['SSO:000008246', 'SSO:000039438']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000030098']\n", + "['SSO:000009137', 'SSO:000030098']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, LysR family']\n", + "SSO ['SSO:000025403']\n", + "['SSO:000025403']\n", + "RAST ['Permease of the drug/metabolite transporter (DMT) superfamily']\n", + "SSO ['SSO:000021459']\n", + "['SSO:000021459']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, PadR family']\n", + "SSO ['SSO:000025945']\n", + "['SSO:000025945']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['Putative hydrolase']\n", + "SSO ['SSO:000012466']\n", + "['SSO:000012466']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Molybdenum ABC transporter ATP-binding protein ModC']\n", + "SSO ['SSO:000004933', 'SSO:000009848']\n", + "['SSO:000004933', 'SSO:000009848']\n", + "RAST ['Molybdenum ABC transporter permease protein ModB']\n", + "SSO ['SSO:000004934']\n", + "['SSO:000004934']\n", + "RAST ['Molybdenum ABC transporter, substrate-binding protein ModA']\n", + "SSO ['SSO:000004935']\n", + "['SSO:000004935']\n", + "RAST ['Sucrose-6-phosphate hydrolase (EC 3.2.1.26)']\n", + "SSO ['SSO:000007796', 'SSO:000017388']\n", + "['SSO:000007796', 'SSO:000017388']\n", + "RAST ['Mannonate dehydratase (EC 4.2.1.8)']\n", + "SSO ['SSO:000004709']\n", + "['SSO:000004709']\n", + "RAST ['Integral membrane protein MSMEG_5788']\n", + "SSO ['SSO:000036404']\n", + "['SSO:000036404']\n", + "RAST ['Thioredoxin']\n", + "SSO ['SSO:000008042', 'SSO:000025628']\n", + "['SSO:000008042', 'SSO:000025628']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['FIG00511435: hypothetical protein']\n", + "RAST ['Methionine biosynthesis and transport regulator MtaR, LysR family']\n", + "SSO ['SSO:000019559']\n", + "['SSO:000019559']\n", + "RAST ['FIG00809903: hypothetical protein']\n", + "RAST ['5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)']\n", + "SSO ['SSO:000000430', 'SSO:000031065']\n", + "['SSO:000000430', 'SSO:000031065']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['HNH endonuclease family protein']\n", + "SSO ['SSO:000017578', 'SSO:000017581']\n", + "['SSO:000017578', 'SSO:000017581']\n", + "RAST ['Membrane protein']\n", + "SSO ['SSO:000009756']\n", + "['SSO:000009756']\n", + "RAST ['Iron-dependent repressor IdeR/DtxR']\n", + "SSO ['SSO:000004011']\n", + "['SSO:000004011']\n", + "RAST ['Phosphoserine aminotransferase (EC 2.6.1.52)']\n", + "SSO ['SSO:000006050', 'SSO:000044064']\n", + "['SSO:000006050', 'SSO:000044064']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010090']\n", + "['SSO:000009137', 'SSO:000010090']\n", + "RAST ['TPR-repeat-containing protein']\n", + "SSO ['SSO:000007895']\n", + "['SSO:000007895']\n", + "RAST ['Cold shock protein of CSP family => SCO4325']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['probable DNA-binding protein']\n", + "RAST ['DNA repair helicase']\n", + "SSO ['SSO:000012725', 'SSO:000012847']\n", + "['SSO:000012725', 'SSO:000012847']\n", + "RAST ['Two-component transcriptional response regulator, LuxR family']\n", + "SSO ['SSO:000011755']\n", + "['SSO:000011755']\n", + "RAST ['Glutathione-independent formaldehyde dehydrogenase (EC 1.2.1.46)']\n", + "SSO ['SSO:000017312']\n", + "['SSO:000017312']\n", + "RAST ['Two-component system sensor histidine kinase']\n", + "SSO ['SSO:000021767']\n", + "['SSO:000021767']\n", + "RAST ['Heat shock protein 60 kDa family chaperone GroEL']\n", + "SSO ['SSO:000029569', 'SSO:000035012']\n", + "['SSO:000029569', 'SSO:000035012']\n", + "RAST ['Cold shock protein of CSP family']\n", + "SSO ['SSO:000012337', 'SSO:000012339']\n", + "['SSO:000012337', 'SSO:000012339']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12)']\n", + "SSO ['SSO:000033963']\n", + "['SSO:000033963']\n", + "RAST ['FIG002003: Protein YdjA']\n", + "SSO ['SSO:000009703', 'SSO:000013661']\n", + "['SSO:000009703', 'SSO:000013661']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['3-oxoacyl-[ACP] synthase III in alkane synthesis cluster']\n", + "SSO ['SSO:000000329']\n", + "['SSO:000000329']\n", + "RAST ['Haloalkane dehalogenase-like protein', 'AMP-dependent synthetase/ligase in alkane synthesis cluster']\n", + "SSO ['SSO:000035530']\n", + "['SSO:000035530']\n", + "RAST ['NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster']\n", + "SSO ['SSO:000005169', 'SSO:000020272']\n", + "['SSO:000005169', 'SSO:000020272']\n", + "RAST ['Thioredoxin reductase (EC 1.8.1.9)']\n", + "SSO ['SSO:000008043', 'SSO:000037035']\n", + "['SSO:000008043', 'SSO:000037035']\n", + "RAST ['Glutamyl-tRNA synthetase (EC 6.1.1.17)', 'Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)']\n", + "RAST ['2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases']\n", + "SSO ['SSO:000009564']\n", + "['SSO:000009564']\n", + "RAST ['CDP-glycerol: N-acetyl-beta-D-mannosaminyl-1,4-N-acetyl-D-glucosaminyldiphosphoundecaprenyl glycerophosphotransferase']\n", + "SSO ['SSO:000011532', 'SSO:000017392']\n", + "['SSO:000011532', 'SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00511908: hypothetical protein']\n", + "RAST ['FIG00512203: hypothetical protein']\n", + "RAST ['FIG00511819: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Isoflavone reductase homolog P3 (EC 1.3.1.-)']\n", + "SSO ['SSO:000009137', 'SSO:000018649']\n", + "['SSO:000009137', 'SSO:000018649']\n", + "RAST ['Threonine dehydrogenase and related Zn-dependent dehydrogenases']\n", + "SSO ['SSO:000025638']\n", + "['SSO:000025638']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Ubiquinone biosynthesis monooxygenase UbiB']\n", + "SSO ['SSO:000042171']\n", + "['SSO:000042171']\n", + "RAST ['Transcriptional regulator, PadR family']\n", + "SSO ['SSO:000025945']\n", + "['SSO:000025945']\n", + "RAST ['Deoxyribodipyrimidine photolyase (EC 4.1.99.3)']\n", + "SSO ['SSO:000002250']\n", + "['SSO:000002250']\n", + "RAST ['Efflux ABC transporter, permease/ATP-binding protein']\n", + "SSO ['SSO:000009848', 'SSO:000011023']\n", + "['SSO:000009848', 'SSO:000011023']\n", + "RAST ['Alkanal monooxygenase alpha chain (EC 1.14.14.3)']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Two-component transcriptional response regulator, NarL/FixJ family']\n", + "SSO ['SSO:000039859']\n", + "['SSO:000039859']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000024474']\n", + "['SSO:000009137', 'SSO:000024474']\n", + "RAST ['CAAX amino terminal protease family protein']\n", + "RAST ['Gb|AAF24581.1']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Threonine dehydrogenase and related Zn-dependent dehydrogenases']\n", + "SSO ['SSO:000025638']\n", + "['SSO:000025638']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000012512']\n", + "['SSO:000009137', 'SSO:000012512']\n", + "RAST ['4-carboxymuconolactone decarboxylase (EC 4.1.1.44)']\n", + "SSO ['SSO:000000355']\n", + "['SSO:000000355']\n", + "RAST ['daunorubicin C-13 ketoreductase']\n", + "SSO ['SSO:000013009']\n", + "['SSO:000013009']\n", + "RAST ['Putative DNA-binding protein']\n", + "SSO ['SSO:000030098']\n", + "['SSO:000030098']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Chromosome (plasmid) partitioning protein ParA']\n", + "SSO ['SSO:000001564', 'SSO:000009137']\n", + "['SSO:000001564', 'SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phage DNA invertase']\n", + "SSO ['SSO:000021485']\n", + "['SSO:000021485']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00827728: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Mobile element protein']\n", + "SSO ['SSO:000018206', 'SSO:000019954']\n", + "['SSO:000018206', 'SSO:000019954']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Replicative DNA helicase (DnaB) (EC 3.6.4.12)']\n", + "SSO ['SSO:000007005', 'SSO:000024013']\n", + "['SSO:000007005', 'SSO:000024013']\n", + "RAST ['LSU ribosomal protein L9p']\n", + "SSO ['SSO:000004365']\n", + "['SSO:000004365']\n", + "RAST ['SSU ribosomal protein S18p, zinc-independent', 'SSU ribosomal protein S18p']\n", + "RAST ['Single-stranded DNA-binding protein']\n", + "SSO ['SSO:000007565']\n", + "['SSO:000007565']\n", + "RAST ['SSU ribosomal protein S6p']\n", + "SSO ['SSO:000007333']\n", + "['SSO:000007333']\n", + "RAST ['CCA tRNA nucleotidyltransferase (EC 2.7.7.72)']\n", + "SSO ['SSO:000001295']\n", + "['SSO:000001295']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Proposed peptidoglycan lipid II flippase MurJ']\n", + "SSO ['SSO:000006408']\n", + "['SSO:000006408']\n", + "RAST ['Thioredoxin reductase (EC 1.8.1.9)']\n", + "SSO ['SSO:000008043', 'SSO:000043984']\n", + "['SSO:000008043', 'SSO:000043984']\n", + "RAST ['Thioredoxin']\n", + "SSO ['SSO:000008042']\n", + "['SSO:000008042']\n", + "RAST ['Aspartate aminotransferase (AspB-14) (EC 2.6.1.1)']\n", + "SSO ['SSO:000034703']\n", + "['SSO:000034703']\n", + "RAST ['D-alanine--D-alanine ligase (EC 6.3.2.4)']\n", + "SSO ['SSO:000001986']\n", + "['SSO:000001986']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Chromosome (plasmid) partitioning protein ParB']\n", + "SSO ['SSO:000001565']\n", + "['SSO:000001565']\n", + "RAST ['Chromosome (plasmid) partitioning protein ParA']\n", + "SSO ['SSO:000001564']\n", + "['SSO:000001564']\n", + "RAST ['16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)']\n", + "SSO ['SSO:000000061']\n", + "['SSO:000000061']\n", + "RAST ['RNA-binding protein Jag']\n", + "SSO ['SSO:000006930', 'SSO:000012746']\n", + "['SSO:000006930', 'SSO:000012746']\n", + "RAST ['Inner membrane protein translocase and chaperone YidC, short form OxaI-like']\n", + "SSO ['SSO:000036391']\n", + "['SSO:000036391']\n", + "RAST ['Membrane protein insertion efficiency factor YidD']\n", + "SSO ['SSO:000035545']\n", + "['SSO:000035545']\n", + "RAST ['Ribonuclease P protein component (EC 3.1.26.5)']\n", + "SSO ['SSO:000007089']\n", + "['SSO:000007089']\n", + "RAST ['LSU ribosomal protein L34p']\n", + "SSO ['SSO:000004300']\n", + "['SSO:000004300']\n", + "RAST ['Chromosomal replication initiator protein DnaA']\n", + "SSO ['SSO:000001563']\n", + "['SSO:000001563']\n", + "RAST ['DNA polymerase III beta subunit (EC 2.7.7.7)']\n", + "SSO ['SSO:000002080']\n", + "['SSO:000002080']\n", + "RAST ['6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)']\n", + "SSO ['SSO:000000456']\n", + "['SSO:000000456']\n", + "RAST ['DNA recombination and repair protein RecF']\n", + "SSO ['SSO:000002095']\n", + "['SSO:000002095']\n", + "RAST ['Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives']\n", + "SSO ['SSO:000009007']\n", + "['SSO:000009007']\n", + "RAST ['DNA gyrase subunit B (EC 5.99.1.3)']\n", + "SSO ['SSO:000002068']\n", + "['SSO:000002068']\n", + "RAST ['DNA gyrase subunit A (EC 5.99.1.3)']\n", + "SSO ['SSO:000002067']\n", + "['SSO:000002067']\n", + "RAST ['FIG187021: hypothetical protein']\n", + "SSO ['SSO:000016560']\n", + "['SSO:000016560']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)']\n", + "SSO ['SSO:000005809', 'SSO:000021415']\n", + "['SSO:000005809', 'SSO:000021415']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG018426: putative septation inhibitor protein']\n", + "SSO ['SSO:000016287']\n", + "['SSO:000016287']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Anthranilate synthase, amidotransferase component (EC 4.1.3.27)', 'Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)']\n", + "RAST ['Serine/threonine-protein kinase PknB (EC 2.7.11.1)']\n", + "SSO ['SSO:000024603']\n", + "['SSO:000024603']\n", + "RAST ['Serine/threonine-protein kinase PknA (EC 2.7.11.1)']\n", + "SSO ['SSO:000024584', 'SSO:000024602']\n", + "['SSO:000024584', 'SSO:000024602']\n", + "RAST ['FtsI-like cell elongation transpeptidase']\n", + "SSO ['SSO:000035981']\n", + "['SSO:000035981']\n", + "RAST ['FtsW-like cell division membrane protein CA_C0505']\n", + "SSO ['SSO:000035985']\n", + "['SSO:000035985']\n", + "RAST ['Serine/threonine phosphatase PPP (EC 3.1.3.16)']\n", + "SSO ['SSO:000024582', 'SSO:000024592']\n", + "['SSO:000024582', 'SSO:000024592']\n", + "RAST ['FHA-domain-containing protein']\n", + "SSO ['SSO:000013635']\n", + "['SSO:000013635']\n", + "RAST ['Adenylate cyclase (EC 4.6.1.1)']\n", + "SSO ['SSO:000000819']\n", + "['SSO:000000819']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000030067']\n", + "['SSO:000009137', 'SSO:000030067']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000025627']\n", + "['SSO:000009137', 'SSO:000025627']\n", + "RAST ['FIG00511577: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00511200: hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Phosphoglycolate phosphatase (EC 3.1.3.18)']\n", + "SSO ['SSO:000005983']\n", + "['SSO:000005983']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Endonuclease NucS']\n", + "SSO ['SSO:000013395']\n", + "['SSO:000013395']\n", + "RAST ['Inner membrane protein YbjJ']\n", + "SSO ['SSO:000018384']\n", + "['SSO:000018384']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['DNA-damage-inducible protein F']\n", + "SSO ['SSO:000012935']\n", + "['SSO:000012935']\n", + "RAST ['Pyrimidine permease']\n", + "SSO ['SSO:000023758']\n", + "['SSO:000023758']\n", + "RAST ['Metallopeptidase']\n", + "SSO ['SSO:000018176']\n", + "['SSO:000018176']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glutamyl-tRNA reductase (EC 1.2.1.70)']\n", + "SSO ['SSO:000003185']\n", + "['SSO:000003185']\n", + "RAST ['Acetyltransferase, GNAT family']\n", + "SSO ['SSO:000009631']\n", + "['SSO:000009631']\n", + "RAST ['Sodium-dependent transporter']\n", + "SSO ['SSO:000024925']\n", + "['SSO:000024925']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uroporphyrinogen III decarboxylase (EC 4.1.1.37)']\n", + "SSO ['SSO:000008885', 'SSO:000028881']\n", + "['SSO:000008885', 'SSO:000028881']\n", + "RAST ['Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)']\n", + "SSO ['SSO:000006550']\n", + "['SSO:000006550']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Coproheme decarboxylase HemQ (no EC)']\n", + "SSO ['SSO:000001778']\n", + "['SSO:000001778']\n", + "RAST ['Coproporphyrin ferrochelatase (EC 4.99.1.9)']\n", + "SSO ['SSO:000001779']\n", + "['SSO:000001779']\n", + "RAST ['Porphobilinogen deaminase (EC 2.5.1.61)']\n", + "SSO ['SSO:000006175']\n", + "['SSO:000006175']\n", + "RAST ['Uroporphyrinogen-III synthase (EC 4.2.1.75)']\n", + "SSO ['SSO:000008887']\n", + "['SSO:000008887']\n", + "RAST ['Porphobilinogen synthase (EC 4.2.1.24)']\n", + "SSO ['SSO:000006176']\n", + "['SSO:000006176']\n", + "RAST ['Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)']\n", + "SSO ['SSO:000003163']\n", + "['SSO:000003163']\n", + "RAST ['ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['Transcriptional regulator, GntR family']\n", + "SSO ['SSO:000019301']\n", + "['SSO:000019301']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Acryloyl-CoA reductase AcuI/YhdH (EC 1.3.1.84)']\n", + "SSO ['SSO:000000741', 'SSO:000020957']\n", + "['SSO:000000741', 'SSO:000020957']\n", + "RAST ['6-phosphofructokinase (EC 2.7.1.11)']\n", + "SSO ['SSO:000000453']\n", + "['SSO:000000453']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000023750']\n", + "['SSO:000009137', 'SSO:000023750']\n", + "RAST ['Rhodanese domain protein UPF0176, Actinobacterial subgroup']\n", + "SSO ['SSO:000007047', 'SSO:000009299']\n", + "['SSO:000007047', 'SSO:000009299']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, GntR family']\n", + "SSO ['SSO:000019301']\n", + "['SSO:000019301']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, MarR family']\n", + "SSO ['SSO:000025935']\n", + "['SSO:000025935']\n", + "RAST ['Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88)', 'Proline dehydrogenase (EC 1.5.5.2)']\n", + "RAST ['Transcriptional regulator, AsnC family']\n", + "SSO ['SSO:000025917']\n", + "['SSO:000025917']\n", + "RAST ['NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18)']\n", + "SSO ['SSO:000020368']\n", + "['SSO:000020368']\n", + "RAST ['Ornithine aminotransferase (EC 2.6.1.13)']\n", + "SSO ['SSO:000005513']\n", + "['SSO:000005513']\n", + "RAST ['Membrane proteins related to metalloendopeptidases']\n", + "SSO ['SSO:000019465']\n", + "['SSO:000019465']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000020586']\n", + "['SSO:000009137', 'SSO:000020586']\n", + "RAST ['Inorganic pyrophosphatase (EC 3.6.1.1)']\n", + "SSO ['SSO:000003905', 'SSO:000043609']\n", + "['SSO:000003905', 'SSO:000043609']\n", + "RAST ['tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)']\n", + "SSO ['SSO:000009372']\n", + "['SSO:000009372']\n", + "RAST ['Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)']\n", + "SSO ['SSO:000003687', 'SSO:000043066']\n", + "['SSO:000003687', 'SSO:000043066']\n", + "RAST ['Cell division-associated, ATP-dependent zinc metalloprotease FtsH']\n", + "SSO ['SSO:000035044']\n", + "['SSO:000035044']\n", + "RAST ['Dihydropteroate synthase (EC 2.5.1.15)']\n", + "SSO ['SSO:000002313']\n", + "['SSO:000002313']\n", + "RAST ['Dihydroneopterin aldolase (EC 4.1.2.25)']\n", + "SSO ['SSO:000002299']\n", + "['SSO:000002299']\n", + "RAST ['2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)']\n", + "SSO ['SSO:000000127']\n", + "['SSO:000000127']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['transmembrane protein, distant homology with ydbS']\n", + "SSO ['SSO:000009419']\n", + "['SSO:000009419']\n", + "RAST ['transmembrane protein, distant homology with ydbT']\n", + "SSO ['SSO:000009420']\n", + "['SSO:000009420']\n", + "RAST ['Ketopantoate reductase PanG (EC 1.1.1.169)']\n", + "SSO ['SSO:000004084']\n", + "['SSO:000004084']\n", + "RAST ['Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)']\n", + "SSO ['SSO:000004610']\n", + "['SSO:000004610']\n", + "RAST ['Inositol-1-monophosphatase (EC 3.1.3.25)']\n", + "SSO ['SSO:000003916', 'SSO:000018454']\n", + "['SSO:000003916', 'SSO:000018454']\n", + "RAST ['Ferric iron ABC transporter, ATP-binding protein']\n", + "SSO ['SSO:000002732', 'SSO:000009848']\n", + "['SSO:000002732', 'SSO:000009848']\n", + "RAST ['Putative ABC transporter of substrate X, permease subunit II']\n", + "SSO ['SSO:000006591']\n", + "['SSO:000006591']\n", + "RAST ['Spermidine/putrescine transport system permease protein potB']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000013593', 'SSO:000034314']\n", + "['SSO:000013593', 'SSO:000034314']\n", + "RAST ['Transcriptional regulator, LacI family']\n", + "SSO ['SSO:000025931']\n", + "['SSO:000025931']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['RNA polymerase sigma factor RpoD']\n", + "SSO ['SSO:000006902']\n", + "['SSO:000006902']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['RIO1/ZK632.3/MJ0444 family protein']\n", + "SSO ['SSO:000023820', 'SSO:000024584']\n", + "['SSO:000023820', 'SSO:000024584']\n", + "RAST ['NAD kinase (EC 2.7.1.23)']\n", + "SSO ['SSO:000005159']\n", + "['SSO:000005159']\n", + "RAST ['ATP-dependent Clp protease, ATP-binding subunit ClpC']\n", + "SSO ['SSO:000010025']\n", + "['SSO:000010025']\n", + "RAST ['Acetyltransferase, GNAT family']\n", + "SSO ['SSO:000009631', 'SSO:000042813']\n", + "['SSO:000009631', 'SSO:000042813']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['DNA repair protein RadA']\n", + "SSO ['SSO:000002107']\n", + "['SSO:000002107']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cytochrome c-type biogenesis protein CcsA/ResC']\n", + "SSO ['SSO:000001925']\n", + "['SSO:000001925']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000030098']\n", + "['SSO:000009137', 'SSO:000030098']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phage tail fiber protein']\n", + "SSO ['SSO:000009137', 'SSO:000021553']\n", + "['SSO:000009137', 'SSO:000021553']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['RNA polymerase ECF-type sigma factor']\n", + "SSO ['SSO:000023836']\n", + "['SSO:000023836']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000028910']\n", + "['SSO:000009137', 'SSO:000028910']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative DNA-binding protein']\n", + "SSO ['SSO:000030098']\n", + "['SSO:000030098']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['probable oxidoreductase/Short-chain dehydrogenase']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized protein Msil_1419']\n", + "SSO ['SSO:000009695', 'SSO:000040922']\n", + "['SSO:000009695', 'SSO:000040922']\n", + "RAST ['Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246', 'SSO:000039438']\n", + "['SSO:000008246', 'SSO:000039438']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000028910']\n", + "['SSO:000009137', 'SSO:000028910']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative cupin domain protein']\n", + "SSO ['SSO:000012512', 'SSO:000032457']\n", + "['SSO:000012512', 'SSO:000032457']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010002']\n", + "['SSO:000009137', 'SSO:000010002']\n", + "RAST ['DNA-directed RNA polymerase specialized sigma subunit, sigma24-like']\n", + "SSO ['SSO:000006900', 'SSO:000012940']\n", + "['SSO:000006900', 'SSO:000012940']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Dienelactone hydrolase and related enzymes']\n", + "SSO ['SSO:000013096']\n", + "['SSO:000013096']\n", + "RAST ['Oxidoreductase, aldo/keto reductase family']\n", + "SSO ['SSO:000020980']\n", + "['SSO:000020980']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000030098']\n", + "['SSO:000009137', 'SSO:000030098']\n", + "RAST ['Metallo-beta-lactamase superfamily protein PA0057']\n", + "SSO ['SSO:000004808']\n", + "['SSO:000004808']\n", + "RAST ['Ketosteroid isomerase-related protein']\n", + "SSO ['SSO:000018696']\n", + "['SSO:000018696']\n", + "RAST ['Transcriptional regulator, MarR family']\n", + "SSO ['SSO:000025935']\n", + "['SSO:000025935']\n", + "RAST ['hydrolase']\n", + "SSO ['SSO:000017946']\n", + "['SSO:000017946']\n", + "RAST ['Transcriptional regulator, GntR family']\n", + "SSO ['SSO:000019301']\n", + "['SSO:000019301']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000009842']\n", + "['SSO:000009137', 'SSO:000009842']\n", + "RAST ['Ornithine cyclodeaminase (EC 4.3.1.12)']\n", + "SSO ['SSO:000005515']\n", + "['SSO:000005515']\n", + "RAST ['Hydantoin racemase (EC 5.1.99.5)']\n", + "SSO ['SSO:000003497']\n", + "['SSO:000003497']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative secreted protein']\n", + "SSO ['SSO:000030757']\n", + "['SSO:000030757']\n", + "RAST ['Fic domain protein, Mvan_2529 type']\n", + "SSO ['SSO:000002773', 'SSO:000016742']\n", + "['SSO:000002773', 'SSO:000016742']\n", + "RAST ['rhamnogalacturonan acetylesterase']\n", + "SSO ['SSO:000009137', 'SSO:000024103']\n", + "['SSO:000009137', 'SSO:000024103']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000026225']\n", + "['SSO:000009137', 'SSO:000026225']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized protein SCO4903']\n", + "SSO ['SSO:000022980', 'SSO:000041207']\n", + "['SSO:000022980', 'SSO:000041207']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000016939']\n", + "['SSO:000009137', 'SSO:000016939']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000003118', 'SSO:000005624']\n", + "['SSO:000003118', 'SSO:000005624']\n", + "RAST ['MBL-fold metallo-hydrolase superfamily']\n", + "SSO ['SSO:000034186']\n", + "['SSO:000034186']\n", + "RAST ['NADH:flavin oxidoreductases, Old Yellow Enzyme family']\n", + "SSO ['SSO:000020343']\n", + "['SSO:000020343']\n", + "RAST ['Glycerate kinase (EC 2.7.1.31)']\n", + "SSO ['SSO:000003240']\n", + "['SSO:000003240']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246', 'SSO:000039438']\n", + "['SSO:000008246', 'SSO:000039438']\n", + "RAST ['GNAT family acetyltransferase BA3108']\n", + "SSO ['SSO:000016994']\n", + "['SSO:000016994']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glycosyltransferase']\n", + "SSO ['SSO:000017392', 'SSO:000030067']\n", + "['SSO:000017392', 'SSO:000030067']\n", + "RAST ['Putative DNA-binding protein']\n", + "SSO ['SSO:000030098']\n", + "['SSO:000030098']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00389147: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cellulose synthase (UDP-forming)( EC:2.4.1.12 )']\n", + "SSO ['SSO:000012092', 'SSO:000017392']\n", + "['SSO:000012092', 'SSO:000017392']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Endonuclease VIII']\n", + "SSO ['SSO:000002476']\n", + "['SSO:000002476']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Probable ATP-dependent helicase lhr (EC 3.6.1.-)']\n", + "SSO ['SSO:000012725', 'SSO:000022385']\n", + "['SSO:000012725', 'SSO:000022385']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Putative oxidoreducatse SCO7286']\n", + "SSO ['SSO:000023477']\n", + "['SSO:000023477']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Gluconokinase (EC 2.7.1.12)']\n", + "SSO ['SSO:000003108']\n", + "['SSO:000003108']\n", + "RAST ['Zinc-type alcohol dehydrogenase-like protein']\n", + "SSO ['SSO:000041756']\n", + "['SSO:000041756']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ADP-ribose pyrophosphatase']\n", + "SSO ['SSO:000000533']\n", + "['SSO:000000533']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ATP-dependent RNA helicase']\n", + "SSO ['SSO:000009996', 'SSO:000012725']\n", + "['SSO:000009996', 'SSO:000012725']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00762251: hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Asl0060 protein']\n", + "SSO ['SSO:000010841']\n", + "['SSO:000010841']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phage-related protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000025554']\n", + "['SSO:000009137', 'SSO:000025554']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Flagellar hook-associated protein FlgL']\n", + "SSO ['SSO:000002813']\n", + "['SSO:000002813']\n", + "RAST ['Flagellar hook-associated protein FlgK']\n", + "SSO ['SSO:000002812']\n", + "['SSO:000002812']\n", + "RAST ['FlgN family protein']\n", + "SSO ['SSO:000002853']\n", + "['SSO:000002853']\n", + "RAST ['RNA polymerase sigma factor for flagellar operon']\n", + "SSO ['SSO:000006913']\n", + "['SSO:000006913']\n", + "RAST ['Flagellin protein FlaA']\n", + "SSO ['SSO:000002839', 'SSO:000002841']\n", + "['SSO:000002839', 'SSO:000002841']\n", + "RAST ['Flagellar cap protein FliD']\n", + "SSO ['SSO:000002810']\n", + "['SSO:000002810']\n", + "RAST ['Flagellar biosynthesis protein FliS']\n", + "SSO ['SSO:000002807']\n", + "['SSO:000002807']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative membrane protein']\n", + "SSO ['SSO:000009137', 'SSO:000030665']\n", + "['SSO:000009137', 'SSO:000030665']\n", + "RAST ['Flagellar basal-body rod protein FlgB']\n", + "SSO ['SSO:000002795']\n", + "['SSO:000002795']\n", + "RAST ['Flagellar basal-body rod protein FlgC']\n", + "SSO ['SSO:000002796']\n", + "['SSO:000002796']\n", + "RAST ['Flagellar hook-basal body complex protein FliE']\n", + "SSO ['SSO:000002814']\n", + "['SSO:000002814']\n", + "RAST ['Flagellar M-ring protein FliF']\n", + "SSO ['SSO:000002788']\n", + "['SSO:000002788']\n", + "RAST ['Flagellar motor switch protein FliG']\n", + "SSO ['SSO:000002818']\n", + "['SSO:000002818']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Flagellum-specific ATP synthase FliI']\n", + "SSO ['SSO:000002843']\n", + "['SSO:000002843']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)']\n", + "SSO ['SSO:000002815']\n", + "['SSO:000002815']\n", + "RAST ['Flagellar basal-body rod modification protein FlgD']\n", + "SSO ['SSO:000002794']\n", + "['SSO:000002794']\n", + "RAST ['Flagellar hook protein FlgE']\n", + "SSO ['SSO:000002811']\n", + "['SSO:000002811']\n", + "RAST ['Flagellar protein FlbD']\n", + "SSO ['SSO:000002823']\n", + "['SSO:000002823']\n", + "RAST ['Flagellar motor rotation protein MotA']\n", + "SSO ['SSO:000002816']\n", + "['SSO:000002816']\n", + "RAST ['Flagellar motor rotation protein MotB']\n", + "SSO ['SSO:000002817', 'SSO:000016805']\n", + "['SSO:000002817', 'SSO:000016805']\n", + "RAST ['Flagellar motor switch protein FliM']\n", + "SSO ['SSO:000002819', 'SSO:000009137']\n", + "['SSO:000002819', 'SSO:000009137']\n", + "RAST ['Flagellar motor switch protein FliN']\n", + "SSO ['SSO:000002820']\n", + "['SSO:000002820']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Flagellar biosynthesis protein FliP']\n", + "SSO ['SSO:000002804']\n", + "['SSO:000002804']\n", + "RAST ['Flagellar biosynthesis protein FliQ']\n", + "SSO ['SSO:000002805']\n", + "['SSO:000002805']\n", + "RAST ['Flagellar biosynthesis protein FliR']\n", + "SSO ['SSO:000002806']\n", + "['SSO:000002806']\n", + "RAST ['Flagellar biosynthesis protein FlhB']\n", + "SSO ['SSO:000002801']\n", + "['SSO:000002801']\n", + "RAST ['Flagellar biosynthesis protein FlhA']\n", + "SSO ['SSO:000002800']\n", + "['SSO:000002800']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Carbon storage regulator']\n", + "SSO ['SSO:000001418', 'SSO:000011940']\n", + "['SSO:000001418', 'SSO:000011940']\n", + "RAST ['Spermidine synthase-like protein']\n", + "SSO ['SSO:000009137', 'SSO:000024982']\n", + "['SSO:000009137', 'SSO:000024982']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000024474']\n", + "['SSO:000009137', 'SSO:000024474']\n", + "RAST ['putative two-component system response regulator']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000010002']\n", + "['SSO:000009137', 'SSO:000010002']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator ArgP, LysR family']\n", + "SSO ['SSO:000025793']\n", + "['SSO:000025793']\n", + "RAST ['Arginine exporter protein ArgO']\n", + "SSO ['SSO:000010586', 'SSO:000010793']\n", + "['SSO:000010586', 'SSO:000010793']\n", + "RAST ['DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)']\n", + "SSO ['SSO:000002176']\n", + "['SSO:000002176']\n", + "RAST [\"DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)\"]\n", + "SSO ['SSO:000002178']\n", + "['SSO:000002178']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Type IV fimbrial assembly, ATPase PilB']\n", + "SSO ['SSO:000008561']\n", + "['SSO:000008561']\n", + "RAST ['Twitching motility protein PilT']\n", + "SSO ['SSO:000008429']\n", + "['SSO:000008429']\n", + "RAST ['Type IV fimbrial assembly protein PilC']\n", + "SSO ['SSO:000008560']\n", + "['SSO:000008560']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000031624']\n", + "['SSO:000009137', 'SSO:000031624']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000031624']\n", + "['SSO:000009137', 'SSO:000031624']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000031624']\n", + "['SSO:000009137', 'SSO:000031624']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Leader peptidase (Prepilin peptidase) (EC 3.4.23.43)', 'N-methyltransferase (EC 2.1.1.-)']\n", + "SSO ['SSO:000022350']\n", + "['SSO:000022350']\n", + "RAST ['Type IV pilus biogenesis protein PilM']\n", + "SSO ['SSO:000008567']\n", + "['SSO:000008567']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['SSU ribosomal protein S12p (S23e)']\n", + "SSO ['SSO:000007247']\n", + "['SSO:000007247']\n", + "RAST ['SSU ribosomal protein S7p (S5e)']\n", + "SSO ['SSO:000007337']\n", + "['SSO:000007337']\n", + "RAST ['Translation elongation factor G']\n", + "SSO ['SSO:000008297']\n", + "['SSO:000008297']\n", + "RAST ['Translation elongation factor Tu']\n", + "SSO ['SSO:000008307']\n", + "['SSO:000008307']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Hypothetical protein PA2244 (similar to DNA topoisomerase IB, but possibly involved in glycosyl-transfer)']\n", + "SSO ['SSO:000018044']\n", + "['SSO:000018044']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['SSU ribosomal protein S10p (S20e)']\n", + "SSO ['SSO:000007239']\n", + "['SSO:000007239']\n", + "RAST ['LSU ribosomal protein L3p (L3e)']\n", + "SSO ['SSO:000004323']\n", + "['SSO:000004323']\n", + "RAST ['LSU ribosomal protein L4p (L1e)']\n", + "SSO ['SSO:000004342']\n", + "['SSO:000004342']\n", + "RAST ['LSU ribosomal protein L23p (L23Ae)']\n", + "SSO ['SSO:000004252']\n", + "['SSO:000004252']\n", + "RAST ['LSU ribosomal protein L2p (L8e)']\n", + "SSO ['SSO:000004276']\n", + "['SSO:000004276']\n", + "RAST ['SSU ribosomal protein S19p (S15e)']\n", + "SSO ['SSO:000007280']\n", + "['SSO:000007280']\n", + "RAST ['LSU ribosomal protein L22p (L17e)']\n", + "SSO ['SSO:000004247']\n", + "['SSO:000004247']\n", + "RAST ['SSU ribosomal protein S3p (S3e)']\n", + "SSO ['SSO:000007319']\n", + "['SSO:000007319']\n", + "RAST ['LSU ribosomal protein L16p (L10e)']\n", + "SSO ['SSO:000004219']\n", + "['SSO:000004219']\n", + "RAST ['LSU ribosomal protein L29p (L35e)']\n", + "SSO ['SSO:000004273']\n", + "['SSO:000004273']\n", + "RAST ['SSU ribosomal protein S17p (S11e)']\n", + "SSO ['SSO:000007270']\n", + "['SSO:000007270']\n", + "RAST ['LSU ribosomal protein L14p (L23e)']\n", + "SSO ['SSO:000004212']\n", + "['SSO:000004212']\n", + "RAST ['LSU ribosomal protein L24p (L26e)']\n", + "SSO ['SSO:000004256']\n", + "['SSO:000004256']\n", + "RAST ['LSU ribosomal protein L5p (L11e)']\n", + "SSO ['SSO:000004352']\n", + "['SSO:000004352']\n", + "RAST ['SSU ribosomal protein S8p (S15Ae)']\n", + "SSO ['SSO:000007341']\n", + "['SSO:000007341']\n", + "RAST ['LSU ribosomal protein L6p (L9e)']\n", + "SSO ['SSO:000004355']\n", + "['SSO:000004355']\n", + "RAST ['LSU ribosomal protein L18p (L5e)']\n", + "SSO ['SSO:000004229']\n", + "['SSO:000004229']\n", + "RAST ['SSU ribosomal protein S5p (S2e)']\n", + "SSO ['SSO:000007329']\n", + "['SSO:000007329']\n", + "RAST ['LSU ribosomal protein L30p (L7e)']\n", + "SSO ['SSO:000004280']\n", + "['SSO:000004280']\n", + "RAST ['LSU ribosomal protein L15p (L27Ae)']\n", + "SSO ['SSO:000004216']\n", + "['SSO:000004216']\n", + "RAST ['Protein translocase subunit SecY']\n", + "SSO ['SSO:000006526']\n", + "['SSO:000006526']\n", + "RAST ['Adenylate kinase (EC 2.7.4.3)']\n", + "SSO ['SSO:000000821']\n", + "['SSO:000000821']\n", + "RAST ['Methionine aminopeptidase (EC 3.4.11.18)']\n", + "SSO ['SSO:000004833']\n", + "['SSO:000004833']\n", + "RAST ['Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1']\n", + "SSO ['SSO:000035056']\n", + "['SSO:000035056']\n", + "RAST ['Translation initiation factor 1']\n", + "SSO ['SSO:000008308']\n", + "['SSO:000008308']\n", + "RAST ['LSU ribosomal protein L36p', 'LSU ribosomal protein L36p, zinc-dependent']\n", + "RAST ['SSU ribosomal protein S13p (S18e)']\n", + "SSO ['SSO:000007251']\n", + "['SSO:000007251']\n", + "RAST ['SSU ribosomal protein S11p (S14e)']\n", + "SSO ['SSO:000007243']\n", + "['SSO:000007243']\n", + "RAST ['DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6)']\n", + "SSO ['SSO:000002173']\n", + "['SSO:000002173']\n", + "RAST ['LSU ribosomal protein L17p']\n", + "SSO ['SSO:000004224']\n", + "['SSO:000004224']\n", + "RAST ['tRNA pseudouridine(38-40) synthase (EC 5.4.99.12)']\n", + "SSO ['SSO:000009365']\n", + "['SSO:000009365']\n", + "RAST ['LSU ribosomal protein L13p (L13Ae)']\n", + "SSO ['SSO:000004208']\n", + "['SSO:000004208']\n", + "RAST ['SSU ribosomal protein S9p (S16e)']\n", + "SSO ['SSO:000007345']\n", + "['SSO:000007345']\n", + "RAST ['Phosphoglucosamine mutase (EC 5.4.2.10)']\n", + "SSO ['SSO:000005969']\n", + "['SSO:000005969']\n", + "RAST ['Pantothenate kinase (EC 2.7.1.33)']\n", + "SSO ['SSO:000005728']\n", + "['SSO:000005728']\n", + "RAST ['Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)']\n", + "SSO ['SSO:000036121', 'SSO:000043914']\n", + "['SSO:000036121', 'SSO:000043914']\n", + "RAST ['Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)']\n", + "SSO ['SSO:000003470']\n", + "['SSO:000003470']\n", + "RAST ['Alanine racemase (EC 5.1.1.1)']\n", + "SSO ['SSO:000000848']\n", + "['SSO:000000848']\n", + "RAST ['Alanine racemase (EC 5.1.1.1)']\n", + "SSO ['SSO:000000848']\n", + "['SSO:000000848']\n", + "RAST ['tRNA threonylcarbamoyladenosine biosynthesis protein TsaE']\n", + "SSO ['SSO:000034427']\n", + "['SSO:000034427']\n", + "RAST ['tRNA threonylcarbamoyladenosine biosynthesis protein TsaB']\n", + "SSO ['SSO:000042087']\n", + "['SSO:000042087']\n", + "RAST ['Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.128)']\n", + "SSO ['SSO:000007139', 'SSO:000041789']\n", + "['SSO:000007139', 'SSO:000041789']\n", + "RAST ['N(6)-L-threonylcarbamoyladenine synthase (EC 2.3.1.234)']\n", + "SSO ['SSO:000005069']\n", + "['SSO:000005069']\n", + "RAST ['FIG00761799: membrane protein']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['FIG00945369: hypothetical protein']\n", + "RAST ['Heat shock protein 10 kDa family chaperone GroES']\n", + "SSO ['SSO:000036241']\n", + "['SSO:000036241']\n", + "RAST ['Uncharacterized inner membrane protein RarD']\n", + "SSO ['SSO:000040130']\n", + "['SSO:000040130']\n", + "RAST ['Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1)']\n", + "SSO ['SSO:000009842', 'SSO:000034840']\n", + "['SSO:000009842', 'SSO:000034840']\n", + "RAST ['Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1)']\n", + "SSO ['SSO:000009848', 'SSO:000034836']\n", + "['SSO:000009848', 'SSO:000034836']\n", + "RAST ['Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1)']\n", + "SSO ['SSO:000009848', 'SSO:000034837']\n", + "['SSO:000009848', 'SSO:000034837']\n", + "RAST ['Branched-chain amino acid ABC transporter, permease protein LivM (TC 3.A.1.4.1)']\n", + "SSO ['SSO:000034839']\n", + "['SSO:000034839']\n", + "RAST ['Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1)']\n", + "SSO ['SSO:000034838']\n", + "['SSO:000034838']\n", + "RAST ['CBS domain', \"Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)\"]\n", + "SSO ['SSO:000044002']\n", + "['SSO:000044002']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST [\"Inosine-5'-monophosphate dehydrogenase, catalytic domain (EC 1.1.1.205)\"]\n", + "SSO ['SSO:000003907']\n", + "['SSO:000003907']\n", + "RAST ['TrkA, Potassium channel']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Sodium/hydrogen exchanger family protein']\n", + "SSO ['SSO:000012004', 'SSO:000024944']\n", + "['SSO:000012004', 'SSO:000024944']\n", + "RAST ['Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion']\n", + "SSO ['SSO:000001944', 'SSO:000009137']\n", + "['SSO:000001944', 'SSO:000009137']\n", + "RAST ['Membrane protein']\n", + "SSO ['SSO:000009756']\n", + "['SSO:000009756']\n", + "RAST ['GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2)', 'GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000018474']\n", + "['SSO:000018474']\n", + "RAST ['Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) periplasmic (secreted in GramPositives)']\n", + "SSO ['SSO:000034575', 'SSO:000042933']\n", + "['SSO:000034575', 'SSO:000042933']\n", + "RAST ['ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12)']\n", + "SSO ['SSO:000000572']\n", + "['SSO:000000572']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)']\n", + "SSO ['SSO:000007790']\n", + "['SSO:000007790']\n", + "RAST ['Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)']\n", + "SSO ['SSO:000007789']\n", + "['SSO:000007789']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)']\n", + "SSO ['SSO:000006046']\n", + "['SSO:000006046']\n", + "RAST ['Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)', 'IMP cyclohydrolase (EC 3.5.4.10)']\n", + "RAST ['Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1']\n", + "SSO ['SSO:000009848', 'SSO:000013225']\n", + "['SSO:000009848', 'SSO:000013225']\n", + "RAST ['Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2']\n", + "SSO ['SSO:000009848', 'SSO:000013226']\n", + "['SSO:000009848', 'SSO:000013226']\n", + "RAST ['FIG01124339: hypothetical protein']\n", + "SSO ['SSO:000012746']\n", + "['SSO:000012746']\n", + "RAST ['Spermidine acetyltransferase']\n", + "SSO ['SSO:000024980']\n", + "['SSO:000024980']\n", + "RAST ['Probable transcriptional regulator protein']\n", + "SSO ['SSO:000031859']\n", + "['SSO:000031859']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000013593', 'SSO:000034314']\n", + "['SSO:000013593', 'SSO:000034314']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['alpha-mannosidase (EC 3.2.1.24)']\n", + "SSO ['SSO:000000925']\n", + "['SSO:000000925']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034314']\n", + "['SSO:000034314']\n", + "RAST ['ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034282']\n", + "['SSO:000034282']\n", + "RAST ['ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)']\n", + "SSO ['SSO:000034283']\n", + "['SSO:000034283']\n", + "RAST ['ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron)', 'ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate)']\n", + "SSO ['SSO:000009848']\n", + "['SSO:000009848']\n", + "RAST ['Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)', 'Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)']\n", + "RAST ['UDP-glucose 4-epimerase (EC 5.1.3.2)']\n", + "SSO ['SSO:000008644', 'SSO:000020272']\n", + "['SSO:000008644', 'SSO:000020272']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000017510']\n", + "['SSO:000009137', 'SSO:000017510']\n", + "RAST ['Putative cryptic D-serine deaminase (EC 4.3.1.18)']\n", + "SSO ['SSO:000006629']\n", + "['SSO:000006629']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['putative mRNA-binding protein']\n", + "SSO ['SSO:000020272', 'SSO:000032655']\n", + "['SSO:000020272', 'SSO:000032655']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Formyltetrahydrofolate deformylase (EC 3.5.1.10)']\n", + "SSO ['SSO:000002919']\n", + "['SSO:000002919']\n", + "RAST ['Uncharacterized MFS-type transporter']\n", + "SSO ['SSO:000026890']\n", + "['SSO:000026890']\n", + "RAST ['Integral membrane protein']\n", + "SSO ['SSO:000009137', 'SSO:000018474']\n", + "['SSO:000009137', 'SSO:000018474']\n", + "RAST ['Uncharacterized protein RSP_6119', 'Uncharacterized protein Caur_1846']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000012979']\n", + "['SSO:000009137', 'SSO:000012979']\n", + "RAST ['ATP-dependent Clp protease adaptor protein ClpS']\n", + "SSO ['SSO:000000565']\n", + "['SSO:000000565']\n", + "RAST ['Serine hydroxymethyltransferase (EC 2.1.2.1)']\n", + "SSO ['SSO:000007424']\n", + "['SSO:000007424']\n", + "RAST ['Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)', 'Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)']\n", + "RAST ['Galactokinase (EC 2.7.1.6)']\n", + "SSO ['SSO:000003006']\n", + "['SSO:000003006']\n", + "RAST ['Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)']\n", + "SSO ['SSO:000003012']\n", + "['SSO:000003012']\n", + "RAST ['Transcriptional regulator, DeoR family']\n", + "SSO ['SSO:000025924']\n", + "['SSO:000025924']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000034571']\n", + "['SSO:000009137', 'SSO:000034571']\n", + "RAST ['FIG00734369: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['RNA polymerase sigma-70 factor']\n", + "SSO ['SSO:000006915']\n", + "['SSO:000006915']\n", + "RAST ['FIG111991: hypothetical protein']\n", + "SSO ['SSO:000010682', 'SSO:000016506']\n", + "['SSO:000010682', 'SSO:000016506']\n", + "RAST ['Phosphate ABC transporter, ATP-binding protein PstB (TC 3.A.1.7.1)']\n", + "SSO ['SSO:000038495']\n", + "['SSO:000038495']\n", + "RAST ['Phosphate ABC transporter, permease protein PstA (TC 3.A.1.7.1)']\n", + "SSO ['SSO:000038496']\n", + "['SSO:000038496']\n", + "RAST ['Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1)']\n", + "SSO ['SSO:000038497']\n", + "['SSO:000038497']\n", + "RAST ['Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1)']\n", + "SSO ['SSO:000038498']\n", + "['SSO:000038498']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Polyphosphate kinase (EC 2.7.4.1)']\n", + "SSO ['SSO:000006159']\n", + "['SSO:000006159']\n", + "RAST ['Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD (EC 2.3.1.189)']\n", + "SSO ['SSO:000000714', 'SSO:000043620']\n", + "['SSO:000000714', 'SSO:000043620']\n", + "RAST ['Nitrogen metabolism regulator GlnR, OmpR family']\n", + "SSO ['SSO:000037222']\n", + "['SSO:000037222']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['DUF1794']\n", + "SSO ['SSO:000012971']\n", + "['SSO:000012971']\n", + "RAST ['tRNA-modifying protein YgfZ']\n", + "SSO ['SSO:000042093']\n", + "['SSO:000042093']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Uncharacterized protein SCO4203']\n", + "SSO ['SSO:000027769']\n", + "['SSO:000027769']\n", + "RAST ['Phosphoglycerate mutase (EC 5.4.2.11)']\n", + "SSO ['SSO:000005972', 'SSO:000021661']\n", + "['SSO:000005972', 'SSO:000021661']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, GntR family']\n", + "SSO ['SSO:000019301']\n", + "['SSO:000019301']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, MarR family']\n", + "SSO ['SSO:000025935']\n", + "['SSO:000025935']\n", + "RAST ['Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps']\n", + "SSO ['SSO:000020081']\n", + "['SSO:000020081']\n", + "RAST ['small multidrug resistance family (SMR) protein']\n", + "SSO ['SSO:000011997', 'SSO:000039191']\n", + "['SSO:000011997', 'SSO:000039191']\n", + "RAST ['small multidrug resistance family (SMR) protein']\n", + "SSO ['SSO:000011997', 'SSO:000039191']\n", + "['SSO:000011997', 'SSO:000039191']\n", + "RAST ['ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose)']\n", + "SSO ['SSO:000034277']\n", + "['SSO:000034277']\n", + "RAST ['L-arabinose ABC transporter, permease protein AraH']\n", + "SSO ['SSO:000036485']\n", + "['SSO:000036485']\n", + "RAST ['ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose)']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Phosphate transport system regulatory protein PhoU']\n", + "SSO ['SSO:000005927']\n", + "['SSO:000005927']\n", + "RAST ['Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)']\n", + "SSO ['SSO:000005921', 'SSO:000024474']\n", + "['SSO:000005921', 'SSO:000024474']\n", + "RAST ['Phosphate regulon transcriptional regulatory protein PhoB (SphR)']\n", + "SSO ['SSO:000005922']\n", + "['SSO:000005922']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['CarD-like transcriptional regulator']\n", + "SSO ['SSO:000011920', 'SSO:000011921']\n", + "['SSO:000011920', 'SSO:000011921']\n", + "RAST ['2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)']\n", + "SSO ['SSO:000000115']\n", + "['SSO:000000115']\n", + "RAST ['Cysteinyl-tRNA synthetase (EC 6.1.1.16)']\n", + "SSO ['SSO:000001868', 'SSO:000043351']\n", + "['SSO:000001868', 'SSO:000043351']\n", + "RAST [\"23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185)\"]\n", + "SSO ['SSO:000000238']\n", + "['SSO:000000238']\n", + "RAST ['Chromosome segregation ATPases']\n", + "SSO ['SSO:000012224']\n", + "['SSO:000012224']\n", + "RAST ['Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)']\n", + "SSO ['SSO:000017321']\n", + "['SSO:000017321']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137', 'SSO:000025627']\n", + "['SSO:000009137', 'SSO:000025627']\n", + "RAST ['Phosphoesterase']\n", + "SSO ['SSO:000019538', 'SSO:000021642']\n", + "['SSO:000019538', 'SSO:000021642']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Cinnamyl alcohol dehydrogenase/reductase (EC 1.1.1.195)', 'Alcohol dehydrogenase (EC 1.1.1.1)']\n", + "RAST ['ROK family sugar kinase or transcriptional regulator']\n", + "RAST ['FIG00546727: hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, LysR family']\n", + "SSO ['SSO:000025403']\n", + "['SSO:000025403']\n", + "RAST ['Oxidoreductase, short-chain dehydrogenase/reductase family']\n", + "SSO ['SSO:000005624']\n", + "['SSO:000005624']\n", + "RAST ['Uncharacterized protein RSP_3230']\n", + "SSO ['SSO:000041021']\n", + "['SSO:000041021']\n", + "RAST ['hypothetical protein']\n", + "SSO ['SSO:000009137']\n", + "['SSO:000009137']\n", + "RAST ['Transcriptional regulator, AcrR family']\n", + "SSO ['SSO:000008246']\n", + "['SSO:000008246']\n", + "RAST ['Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88)', 'Proline dehydrogenase (EC 1.5.5.2)']\n", + "RAST ['Fumarylacetoacetate hydrolase family protein']\n", + "SSO ['SSO:000016921']\n", + "['SSO:000016921']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['pantetheine-phosphate adenylyltransferase']\n", + "RAST ['peptidylprolyl isomerase']\n", + "RAST ['peptidylprolyl isomerase']\n", + "RAST ['tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA']\n", + "RAST ['tRNA guanosine(34) transglycosylase Tgt']\n", + "RAST ['aminodeoxychorismate synthase component I']\n", + "RAST ['esterase-like activity of phytase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ATP-dependent DNA helicase RecG']\n", + "RAST ['succinate dehydrogenase assembly factor 2']\n", + "RAST ['transcription-repair coupling factor']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DMT family transporter']\n", + "RAST ['DsbA family protein']\n", + "RAST ['extracellular solute-binding protein']\n", + "RAST ['invasion associated locus B family protein']\n", + "RAST ['heat shock protein HspQ']\n", + "RAST ['DMT family transporter']\n", + "RAST ['type I glutamate--ammonia ligase']\n", + "RAST ['P-II family nitrogen regulator']\n", + "RAST ['bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase']\n", + "RAST ['substrate-binding domain-containing protein']\n", + "RAST ['glycoside hydrolase family 2 protein']\n", + "RAST ['L-glyceraldehyde 3-phosphate reductase']\n", + "RAST ['RcnB family protein']\n", + "RAST ['GTP-binding protein']\n", + "RAST ['zinc ABC transporter substrate-binding protein ZnuA']\n", + "RAST ['metal ABC transporter ATP-binding protein']\n", + "RAST ['zinc ABC transporter permease subunit ZnuB']\n", + "RAST ['transcriptional repressor']\n", + "RAST ['gamma carbonic anhydrase family protein']\n", + "RAST ['fumarylacetoacetate hydrolase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['tRNA dihydrouridine(20/20a) synthase DusA']\n", + "RAST ['DUF72 domain-containing protein']\n", + "RAST ['excinuclease ABC subunit UvrA']\n", + "RAST ['single-stranded DNA-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF6331 family protein']\n", + "RAST ['DUF2000 family protein']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['septum formation initiator family protein']\n", + "RAST ['pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha']\n", + "RAST ['pyruvate dehydrogenase complex E1 component subunit beta']\n", + "RAST ['pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase']\n", + "RAST ['SGNH/GDSL hydrolase family protein']\n", + "RAST ['dihydrolipoyl dehydrogenase']\n", + "RAST ['GlsB/YeaQ/YmgE family stress response membrane protein']\n", + "RAST ['GlsB/YeaQ/YmgE family stress response membrane protein']\n", + "RAST ['lipoyl synthase']\n", + "RAST ['DNA topoisomerase IV subunit B']\n", + "RAST ['phospholipase']\n", + "RAST ['triose-phosphate isomerase']\n", + "RAST ['preprotein translocase subunit SecG']\n", + "RAST ['CTP synthase']\n", + "RAST ['VOC family protein']\n", + "RAST ['efflux RND transporter periplasmic adaptor subunit']\n", + "RAST ['efflux RND transporter permease subunit']\n", + "RAST ['flagellar biosynthetic protein FliO']\n", + "RAST ['PAS domain-containing hybrid sensor histidine kinase/response regulator']\n", + "RAST ['ATP-dependent Clp protease adapter ClpS']\n", + "RAST ['ATP-dependent Clp protease ATP-binding subunit ClpA']\n", + "RAST ['AzlC family ABC transporter permease']\n", + "RAST ['AzlD domain-containing protein']\n", + "RAST ['phosphatase PAP2 family protein']\n", + "RAST ['DUF982 domain-containing protein']\n", + "RAST ['BON domain-containing protein']\n", + "RAST ['DUF192 domain-containing protein']\n", + "RAST ['CspA family cold shock protein']\n", + "RAST ['lactoylglutathione lyase']\n", + "RAST ['DUF882 domain-containing protein']\n", + "RAST ['HPP family protein']\n", + "RAST ['MarC family protein']\n", + "RAST ['DNA gyrase subunit A']\n", + "RAST ['hypothetical protein']\n", + "RAST ['D-alanyl-D-alanine carboxypeptidase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['response regulator']\n", + "RAST ['PAS domain-containing protein']\n", + "RAST ['PAS domain-containing protein']\n", + "RAST ['S-formylglutathione hydrolase']\n", + "RAST ['DUF1345 domain-containing protein']\n", + "RAST ['YaiI/YqxD family protein']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['CsbD family protein']\n", + "RAST ['BON domain-containing protein']\n", + "RAST ['DUF992 domain-containing protein']\n", + "RAST ['FUSC family protein']\n", + "RAST ['FUSC family protein']\n", + "RAST ['ubiquinone-dependent pyruvate dehydrogenase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['septal ring lytic transglycosylase RlpA family protein']\n", + "RAST ['D-alanyl-D-alanine carboxypeptidase']\n", + "RAST ['dTMP kinase']\n", + "RAST [\"DNA polymerase III subunit delta'\"]\n", + "RAST ['methionine--tRNA ligase']\n", + "RAST ['TatD family hydrolase']\n", + "RAST ['MBL fold metallo-hydrolase']\n", + "RAST ['chloride channel protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['GlxA family transcriptional regulator']\n", + "RAST ['NADP-dependent oxidoreductase']\n", + "RAST ['NADP-dependent oxidoreductase']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['MFS transporter']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ATP12 family chaperone protein']\n", + "RAST ['HAD-IA family hydrolase']\n", + "RAST ['RluA family pseudouridine synthase']\n", + "RAST ['fluoride efflux transporter CrcB']\n", + "RAST ['hypothetical protein']\n", + "RAST ['copper resistance protein']\n", + "RAST ['DUF1775 domain-containing protein']\n", + "RAST ['DUF3008 family protein']\n", + "RAST ['glycine cleavage system aminomethyltransferase GcvT']\n", + "RAST ['glycine cleavage system protein GcvH']\n", + "RAST ['aminomethyl-transferring glycine dehydrogenase']\n", + "RAST ['GGDEF domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['MFS transporter']\n", + "RAST ['ferredoxin--NADP reductase']\n", + "RAST ['DUF934 domain-containing protein']\n", + "RAST ['nitrite/sulfite reductase']\n", + "RAST ['DUF2849 domain-containing protein']\n", + "RAST ['siroheme synthase CysG']\n", + "RAST ['nucleoside deaminase']\n", + "RAST ['nucleoside triphosphate pyrophosphohydrolase']\n", + "RAST ['GGDEF domain-containing protein']\n", + "RAST ['GTPase HflX']\n", + "RAST ['RNA chaperone Hfq']\n", + "RAST ['Trk system potassium transporter TrkA']\n", + "RAST ['sigma-54 dependent transcriptional regulator']\n", + "RAST ['PAS domain-containing sensor histidine kinase']\n", + "RAST ['nitrogen regulation protein NR(I)']\n", + "RAST ['nitrogen regulation protein NR(II)']\n", + "RAST ['tRNA dihydrouridine synthase DusB']\n", + "RAST ['bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase']\n", + "RAST ['CinA family protein']\n", + "RAST ['type II toxin-antitoxin system RatA family toxin']\n", + "RAST ['AAA family ATPase']\n", + "RAST ['AAA family ATPase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['DMT family transporter']\n", + "RAST ['ABC transporter ATP-binding protein/permease']\n", + "RAST ['AI-2E family transporter']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF2336 domain-containing protein']\n", + "RAST ['flavin reductase family protein']\n", + "RAST ['nitroreductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['threonine--tRNA ligase']\n", + "RAST ['DUF2267 domain-containing protein']\n", + "RAST ['membrane protein insertion efficiency factor YidD']\n", + "RAST ['iron-sulfur cluster assembly scaffold protein']\n", + "RAST ['GTP cyclohydrolase I FolE']\n", + "RAST ['phosphoribosyl-AMP cyclohydrolase']\n", + "RAST ['patatin-like phospholipase family protein']\n", + "RAST ['CBS domain-containing protein']\n", + "RAST ['rhomboid family intramembrane serine protease']\n", + "RAST ['PilZ domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['transglutaminase-like cysteine peptidase']\n", + "RAST ['DUF1489 family protein']\n", + "RAST ['L-serine ammonia-lyase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['phosphodiester glycosidase family protein']\n", + "RAST ['ParA family protein']\n", + "RAST ['entericidin A/B family lipoprotein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['glycogen debranching protein GlgX']\n", + "RAST ['response regulator']\n", + "RAST ['GlxA family transcriptional regulator']\n", + "RAST ['NADP-dependent phosphogluconate dehydrogenase']\n", + "RAST ['cbb3-type cytochrome oxidase assembly protein CcoS']\n", + "RAST ['cadmium-translocating P-type ATPase']\n", + "RAST ['FixH family protein']\n", + "RAST ['cytochrome c oxidase accessory protein CcoG']\n", + "RAST ['polyketide cyclase']\n", + "RAST ['cytochrome-c oxidase, cbb3-type subunit III']\n", + "RAST ['CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone']\n", + "RAST ['cytochrome-c oxidase, cbb3-type subunit II']\n", + "RAST ['cytochrome-c oxidase, cbb3-type subunit I']\n", + "RAST ['hypothetical protein']\n", + "RAST ['bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase']\n", + "RAST ['DUF599 domain-containing protein']\n", + "RAST ['DUF1624 domain-containing protein']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['MerR family DNA-binding transcriptional regulator']\n", + "RAST ['magnesium transporter']\n", + "RAST ['FdhF/YdeP family oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['peptide deformylase']\n", + "RAST ['OsmC family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['BMP family ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['phosphatidylcholine synthase']\n", + "RAST ['UbiH/UbiF family hydroxylase']\n", + "RAST ['AEC family transporter']\n", + "RAST ['cytochrome c biogenesis CcdA family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['homoserine dehydrogenase']\n", + "RAST ['LL-diaminopimelate aminotransferase']\n", + "RAST ['nucleoside hydrolase']\n", + "RAST ['TSUP family transporter']\n", + "RAST ['PAS domain-containing protein']\n", + "RAST ['PAS domain-containing protein']\n", + "RAST ['lipid A biosynthesis lauroyl acyltransferase']\n", + "RAST ['zinc-binding dehydrogenase']\n", + "RAST ['beta-ketoacyl-ACP synthase']\n", + "RAST ['beta-ketoacyl-ACP synthase']\n", + "RAST ['beta-hydroxyacyl-ACP dehydratase']\n", + "RAST ['acyl carrier protein']\n", + "RAST ['oxygen-independent coproporphyrinogen III oxidase']\n", + "RAST ['transcriptional regulator FnrN']\n", + "RAST ['SulP family inorganic anion transporter']\n", + "RAST ['hypothetical protein']\n", + "RAST ['class I poly(R)-hydroxyalkanoic acid synthase']\n", + "RAST ['DNA/RNA nuclease SfsA']\n", + "RAST ['type I methionyl aminopeptidase']\n", + "RAST ['pilus assembly protein']\n", + "RAST ['pilus assembly protein TadG-related protein']\n", + "RAST ['3-deoxy-7-phosphoheptulonate synthase class II']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['glutathione-disulfide reductase']\n", + "RAST ['DUF2059 domain-containing protein']\n", + "RAST ['ribose-5-phosphate isomerase RpiA']\n", + "RAST ['phosphoglycolate phosphatase']\n", + "RAST ['30S ribosomal protein S4']\n", + "RAST ['TerC family protein']\n", + "RAST ['ATP-binding protein']\n", + "RAST ['EamA family transporter']\n", + "RAST ['LysE family translocator']\n", + "RAST ['5,6-dimethylbenzimidazole synthase']\n", + "RAST ['TolB family protein']\n", + "RAST ['NAD+ synthase']\n", + "RAST ['LTA synthase family protein']\n", + "RAST ['DUF1003 domain-containing protein']\n", + "RAST ['Si-specific NAD(P)(+) transhydrogenase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['nucleoside kinase']\n", + "RAST ['trigger factor']\n", + "RAST ['DUF1127 domain-containing protein']\n", + "RAST ['DUF1127 domain-containing protein']\n", + "RAST ['methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO']\n", + "RAST ['hypothetical protein']\n", + "RAST ['phytoene/squalene synthase family protein']\n", + "RAST ['Mth938-like domain-containing protein']\n", + "RAST ['protein translocase subunit SecDF']\n", + "RAST ['preprotein translocase subunit YajC']\n", + "RAST ['ATP-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['RNA polymerase-binding protein DksA']\n", + "RAST ['histidine phosphatase family protein']\n", + "RAST ['YcjX family protein']\n", + "RAST ['YcjF family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase']\n", + "RAST ['dihydroneopterin aldolase']\n", + "RAST ['dihydropteroate synthase']\n", + "RAST ['DUF922 domain-containing protein']\n", + "RAST ['(2Fe-2S)-binding protein']\n", + "RAST ['transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF2497 domain-containing protein']\n", + "RAST ['protein-L-isoaspartate O-methyltransferase']\n", + "RAST ['DUF3309 family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF982 domain-containing protein']\n", + "RAST ['NAD(P)H:quinone oxidoreductase type IV']\n", + "RAST ['competence/damage-inducible protein A']\n", + "RAST ['universal stress protein']\n", + "RAST ['amino acid ABC transporter ATP-binding protein']\n", + "RAST ['amino acid ABC transporter permease']\n", + "RAST ['amino acid ABC transporter permease']\n", + "RAST ['amino acid ABC transporter substrate-binding protein']\n", + "RAST ['cystathionine beta-lyase']\n", + "RAST ['FAD-dependent monooxygenase']\n", + "RAST ['zinc-finger domain-containing protein']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['serine O-acetyltransferase']\n", + "RAST ['DUF3126 family protein']\n", + "RAST ['single-stranded-DNA-specific exonuclease RecJ']\n", + "RAST ['DedA family protein']\n", + "RAST ['glycerate kinase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['phospholipase D family protein']\n", + "RAST ['response regulator']\n", + "RAST ['response regulator']\n", + "RAST ['GAF domain-containing protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme']\n", + "RAST ['DsbA family protein']\n", + "RAST ['type II 3-dehydroquinate dehydratase']\n", + "RAST ['acetyl-CoA carboxylase biotin carboxyl carrier protein']\n", + "RAST ['acetyl-CoA carboxylase biotin carboxylase subunit']\n", + "RAST ['leucyl/phenylalanyl-tRNA--protein transferase']\n", + "RAST ['DUF2155 domain-containing protein']\n", + "RAST ['NADH:ubiquinone oxidoreductase subunit NDUFA12']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB']\n", + "RAST ['DUF1294 domain-containing protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['YjhX family toxin']\n", + "RAST ['SRPBCC family protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA']\n", + "RAST ['Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC']\n", + "RAST ['hypothetical protein']\n", + "RAST ['metal-dependent hydrolase']\n", + "RAST ['alkylphosphonate utilization protein']\n", + "RAST ['Holliday junction resolvase RuvX']\n", + "RAST ['DUF6105 family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['acyl-CoA dehydrogenase family protein']\n", + "RAST ['aspartate carbamoyltransferase catalytic subunit']\n", + "RAST ['dihydroorotase']\n", + "RAST ['glycerol-3-phosphate 1-O-acyltransferase PlsY']\n", + "RAST ['DNA-processing protein DprA']\n", + "RAST ['type I DNA topoisomerase']\n", + "RAST ['ribonuclease R']\n", + "RAST ['DUF983 domain-containing protein']\n", + "RAST ['NUDIX hydrolase']\n", + "RAST ['MFS transporter']\n", + "RAST ['50S ribosomal protein L33']\n", + "RAST ['PleD family two-component system response regulator']\n", + "RAST ['response regulator']\n", + "RAST ['DUF3572 domain-containing protein']\n", + "RAST ['DNA polymerase IV']\n", + "RAST ['L,D-transpeptidase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DNA polymerase III subunit alpha']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['lipoprotein-releasing ABC transporter permease subunit']\n", + "RAST ['proline--tRNA ligase']\n", + "RAST ['DUF1467 family protein']\n", + "RAST ['methylmalonyl-CoA epimerase']\n", + "RAST ['ribonuclease J']\n", + "RAST ['biotin--[acetyl-CoA-carboxylase] ligase']\n", + "RAST ['NADH-quinone oxidoreductase subunit NuoN']\n", + "RAST ['NADH-quinone oxidoreductase subunit M']\n", + "RAST ['NADH-quinone oxidoreductase subunit L']\n", + "RAST ['NADH-quinone oxidoreductase subunit NuoK']\n", + "RAST ['NADH-quinone oxidoreductase subunit J']\n", + "RAST ['NADH-quinone oxidoreductase subunit NuoI']\n", + "RAST ['NADH-quinone oxidoreductase subunit NuoH']\n", + "RAST ['NADH-quinone oxidoreductase subunit NuoG']\n", + "RAST ['NADH-quinone oxidoreductase subunit NuoF']\n", + "RAST ['NADH-quinone oxidoreductase subunit NuoE']\n", + "RAST ['hypothetical protein']\n", + "RAST ['NADH-quinone oxidoreductase subunit D']\n", + "RAST ['GFA family protein']\n", + "RAST ['NADH-quinone oxidoreductase subunit C']\n", + "RAST ['NADH-quinone oxidoreductase subunit B']\n", + "RAST ['NADH-quinone oxidoreductase subunit A']\n", + "RAST ['DMT family transporter']\n", + "RAST ['DNA-binding protein HupB']\n", + "RAST ['endopeptidase La']\n", + "RAST ['ATP-dependent Clp protease ATP-binding subunit ClpX']\n", + "RAST ['ATP-dependent Clp endopeptidase proteolytic subunit ClpP']\n", + "RAST ['GGDEF domain-containing protein']\n", + "RAST ['cytochrome P450']\n", + "RAST ['YafY family transcriptional regulator']\n", + "RAST ['glutathione S-transferase family protein']\n", + "RAST ['cupin domain-containing protein']\n", + "RAST ['O-acetylhomoserine aminocarboxypropyltransferase']\n", + "RAST ['CoA-binding protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['NAD(P)-binding domain-containing protein']\n", + "RAST ['DMT family transporter']\n", + "RAST ['50S ribosomal protein L13']\n", + "RAST ['30S ribosomal protein S9']\n", + "RAST ['acyltransferase family protein']\n", + "RAST ['agmatinase']\n", + "RAST ['N-acetyl-gamma-glutamyl-phosphate reductase']\n", + "RAST ['phosphotransferase']\n", + "RAST ['COX15/CtaA family protein']\n", + "RAST ['DUF2842 domain-containing protein']\n", + "RAST ['tyrosine-protein kinase family protein']\n", + "RAST ['polysaccharide export protein']\n", + "RAST ['undecaprenyl-phosphate glucose phosphotransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['KTSC domain-containing protein']\n", + "RAST ['tyrosine-type recombinase/integrase']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['Arc family DNA-binding protein']\n", + "RAST ['Arc family DNA-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF4145 domain-containing protein']\n", + "RAST ['D-alanyl-D-alanine carboxypeptidase family protein']\n", + "RAST ['terminase large subunit']\n", + "RAST ['phage head closure protein']\n", + "RAST ['DUF3168 domain-containing protein']\n", + "RAST ['HK97 gp10 family phage protein']\n", + "RAST ['head-tail connector protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['HNH endonuclease']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['phage major capsid protein']\n", + "RAST ['HK97 family phage prohead protease']\n", + "RAST ['gene transfer agent family protein']\n", + "RAST ['phage portal protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['polygalacturonase']\n", + "RAST ['dual specificity protein phosphatase family protein']\n", + "RAST ['DedA family protein']\n", + "RAST ['exopolysaccharide biosynthesis protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['XRE family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF2934 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['TIGR02594 family protein']\n", + "RAST ['methylated-DNA--[protein]-cysteine S-methyltransferase']\n", + "RAST ['DUF982 domain-containing protein']\n", + "RAST ['DNA photolyase family protein']\n", + "RAST ['cysteine synthase A']\n", + "RAST ['alanyl-tRNA editing protein']\n", + "RAST ['3-mercaptopyruvate sulfurtransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF1203 domain-containing protein']\n", + "RAST [\"bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase\"]\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['FMN-dependent NADH-azoreductase']\n", + "RAST ['transcriptional activator HlyU']\n", + "RAST ['threonine ammonia-lyase']\n", + "RAST ['TrkH family potassium uptake protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['MerR family transcriptional regulator']\n", + "RAST ['integration host factor subunit alpha']\n", + "RAST ['ketoacyl-ACP synthase III']\n", + "RAST ['phosphate acyltransferase PlsX']\n", + "RAST ['DUF177 domain-containing protein']\n", + "RAST ['ubiquinol-cytochrome C chaperone']\n", + "RAST ['outer membrane protein assembly factor BamE']\n", + "RAST ['branched-chain amino acid ABC transporter permease']\n", + "RAST ['CGNR zinc finger domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['nucleoside-diphosphate kinase']\n", + "RAST ['glutathione S-transferase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ABC-F family ATP-binding cassette domain-containing protein']\n", + "RAST ['polysaccharide deacetylase family protein']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['ribonuclease activity regulator RraA']\n", + "RAST ['NAD(P)-dependent oxidoreductase']\n", + "RAST ['dihydroxy-acid dehydratase']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['SMP-30/gluconolactonase/LRE family protein']\n", + "RAST ['DNA polymerase III subunit chi']\n", + "RAST ['leucyl aminopeptidase']\n", + "RAST ['LPS export ABC transporter permease LptF']\n", + "RAST ['LPS export ABC transporter permease LptG']\n", + "RAST ['LPS-assembly protein LptD']\n", + "RAST ['SurA N-terminal domain-containing protein']\n", + "RAST ['4-hydroxythreonine-4-phosphate dehydrogenase PdxA']\n", + "RAST ['16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['guanylate kinase']\n", + "RAST ['YicC family protein']\n", + "RAST ['endolytic transglycosylase MltG']\n", + "RAST ['beta-ketoacyl-ACP synthase II']\n", + "RAST ['acyl carrier protein']\n", + "RAST ['3-oxoacyl-[acyl-carrier-protein] reductase']\n", + "RAST ['ACP S-malonyltransferase']\n", + "RAST ['aldo/keto reductase']\n", + "RAST ['30S ribosomal protein S6']\n", + "RAST ['30S ribosomal protein S18']\n", + "RAST ['hypothetical protein']\n", + "RAST ['50S ribosomal protein L9']\n", + "RAST ['EamA family transporter']\n", + "RAST ['winged helix-turn-helix domain-containing protein']\n", + "RAST ['HlyD family secretion protein']\n", + "RAST ['MFS transporter']\n", + "RAST ['MarR family transcriptional regulator']\n", + "RAST ['replicative DNA helicase']\n", + "RAST ['ABC transporter ATP-binding protein/permease']\n", + "RAST ['AzlD family protein']\n", + "RAST ['AzlC family ABC transporter permease']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['alanine racemase']\n", + "RAST ['DNA repair protein RadA']\n", + "RAST ['CvpA family protein']\n", + "RAST ['amidophosphoribosyltransferase']\n", + "RAST ['SDR family NAD(P)-dependent oxidoreductase']\n", + "RAST ['cysteine--tRNA ligase']\n", + "RAST ['DUF559 domain-containing protein']\n", + "RAST ['GFA family protein']\n", + "RAST ['GFA family protein']\n", + "RAST ['prolyl aminopeptidase']\n", + "RAST ['EamA family transporter RarD']\n", + "RAST ['TIGR00730 family Rossman fold protein']\n", + "RAST ['LysM peptidoglycan-binding domain-containing protein']\n", + "RAST ['ABC transporter ATP-binding protein/permease']\n", + "RAST ['phosphatidylserine decarboxylase']\n", + "RAST ['CDP-diacylglycerol--serine O-phosphatidyltransferase']\n", + "RAST ['SOS response-associated peptidase']\n", + "RAST ['YnfA family protein']\n", + "RAST ['glutathione S-transferase family protein']\n", + "RAST ['NUDIX domain-containing protein']\n", + "RAST ['TIGR02301 family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['folate-binding protein YgfZ']\n", + "RAST ['HD family hydrolase']\n", + "RAST ['tyrosine phosphatase family protein']\n", + "RAST ['mechanosensitive ion channel family protein']\n", + "RAST ['bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['VOC family protein']\n", + "RAST ['DUF2339 domain-containing protein']\n", + "RAST ['HD domain-containing protein']\n", + "RAST ['MOSC domain-containing protein']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['MFS transporter']\n", + "RAST ['DNA repair protein RecO']\n", + "RAST ['response regulator']\n", + "RAST ['Crp/Fnr family transcriptional regulator']\n", + "RAST ['GTPase Era']\n", + "RAST ['ribonuclease III']\n", + "RAST ['signal peptidase I']\n", + "RAST ['holo-ACP synthase']\n", + "RAST ['DUF2062 domain-containing protein']\n", + "RAST ['DUF3563 domain-containing protein']\n", + "RAST [\"bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase\"]\n", + "RAST ['DNA-directed RNA polymerase subunit omega']\n", + "RAST ['NYN domain-containing protein']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['FkbM family methyltransferase']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['oxidoreductase']\n", + "RAST ['SsrA-binding protein SmpB']\n", + "RAST ['4-hydroxy-tetrahydrodipicolinate synthase']\n", + "RAST ['lytic transglycosylase domain-containing protein']\n", + "RAST ['porin']\n", + "RAST ['porin']\n", + "RAST ['porin']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['HpcH/HpaI aldolase/citrate lyase family protein']\n", + "RAST ['FAD-dependent oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['pyridoxal phosphate-dependent aminotransferase']\n", + "RAST ['sel1 repeat family protein']\n", + "RAST ['DUF2147 domain-containing protein']\n", + "RAST ['LysE family translocator']\n", + "RAST ['Lrp/AsnC family transcriptional regulator']\n", + "RAST ['PhoX family phosphatase']\n", + "RAST ['glycoside hydrolase']\n", + "RAST ['cold-shock protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['30S ribosomal protein S21']\n", + "RAST ['hypothetical protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['AMP nucleosidase']\n", + "RAST ['lysylphosphatidylglycerol synthase domain-containing protein']\n", + "RAST ['glycosyltransferase family 2 protein']\n", + "RAST ['glycosyltransferase family 39 protein']\n", + "RAST ['OsmC family protein']\n", + "RAST ['aspartate aminotransferase family protein']\n", + "RAST ['diacylglycerol kinase family lipid kinase']\n", + "RAST ['MFS transporter']\n", + "RAST ['autotransporter domain-containing protein']\n", + "RAST ['magnesium transporter']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['homocysteine S-methyltransferase family protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['transporter substrate-binding domain-containing protein']\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['undecaprenyl-diphosphate phosphatase']\n", + "RAST ['GAF domain-containing protein']\n", + "RAST ['coniferyl aldehyde dehydrogenase']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['zinc-binding alcohol dehydrogenase family protein']\n", + "RAST ['pentapeptide repeat-containing protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['electron transfer flavoprotein-ubiquinone oxidoreductase']\n", + "RAST ['cation transporter']\n", + "RAST ['dGTPase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['class D beta-lactamase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['Hsp70 family protein']\n", + "RAST ['uracil-DNA glycosylase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DMT family transporter']\n", + "RAST ['aminopeptidase N']\n", + "RAST ['carboxymuconolactone decarboxylase family protein']\n", + "RAST ['PAS domain-containing sensor histidine kinase']\n", + "RAST ['metallophosphoesterase']\n", + "RAST ['bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase']\n", + "RAST ['HAMP domain-containing protein']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['Do family serine endopeptidase']\n", + "RAST ['cytochrome c-type biogenesis protein CcmH']\n", + "RAST ['heme lyase CcmF/NrfE family subunit']\n", + "RAST ['cytochrome c maturation protein CcmE']\n", + "RAST ['c-type cytochrome biogenesis protein CcmI']\n", + "RAST ['hypothetical protein']\n", + "RAST ['HAMP domain-containing histidine kinase']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Dabb family protein']\n", + "RAST ['alpha/beta-hydrolase family protein']\n", + "RAST ['Lrp/AsnC family transcriptional regulator']\n", + "RAST ['saccharopine dehydrogenase family protein']\n", + "RAST ['MucR family transcriptional regulator']\n", + "RAST ['monovalent cation/H(+) antiporter subunit G']\n", + "RAST ['cation:proton antiporter']\n", + "RAST ['Na+/H+ antiporter subunit E']\n", + "RAST ['Na+/H+ antiporter subunit D']\n", + "RAST ['Na+/H+ antiporter subunit C']\n", + "RAST ['Na(+)/H(+) antiporter subunit B']\n", + "RAST ['putative monovalent cation/H+ antiporter subunit A']\n", + "RAST ['peptide-methionine (R)-S-oxide reductase MsrB']\n", + "RAST ['biotin transporter BioY']\n", + "RAST ['biotin synthase BioB']\n", + "RAST ['rhodanese']\n", + "RAST ['transcriptional regulator FtrA']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['hemolysin III family protein']\n", + "RAST ['universal stress protein']\n", + "RAST ['VOC family protein']\n", + "RAST ['AI-2E family transporter']\n", + "RAST ['polysaccharide deacetylase family protein']\n", + "RAST ['dihydrodipicolinate synthase family protein']\n", + "RAST ['YdiU family protein']\n", + "RAST ['GH32 C-terminal domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['heavy-metal-associated domain-containing protein']\n", + "RAST ['Cu(I)-responsive transcriptional regulator']\n", + "RAST ['heavy metal translocating P-type ATPase']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['class D beta-lactamase']\n", + "RAST ['YcgN family cysteine cluster protein']\n", + "RAST ['penicillin-binding protein']\n", + "RAST ['DUF805 domain-containing protein']\n", + "RAST ['DUF2231 domain-containing protein']\n", + "RAST ['sorbosone dehydrogenase family protein']\n", + "RAST ['DUF1801 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF1214 domain-containing protein']\n", + "RAST ['DUF1254 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF2336 domain-containing protein']\n", + "RAST ['DUF1491 family protein']\n", + "RAST ['peptidoglycan-binding protein']\n", + "RAST ['HAMP domain-containing histidine kinase']\n", + "RAST ['DUF5330 domain-containing protein']\n", + "RAST ['SufE family protein']\n", + "RAST ['DUF930 domain-containing protein']\n", + "RAST ['S9 family peptidase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['CDF family Co(II)/Ni(II) efflux transporter DmeF']\n", + "RAST ['Ni(II)/Co(II)-sensing transcriptional repressor DmeR']\n", + "RAST ['sulfite exporter TauE/SafE family protein']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['YbhB/YbcL family Raf kinase inhibitor-like protein']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['glutamine amidotransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['CbtA family protein']\n", + "RAST ['CbtB-domain containing protein']\n", + "RAST ['cytochrome c']\n", + "RAST ['cytochrome c']\n", + "RAST ['metallophosphoesterase']\n", + "RAST ['superoxide dismutase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['LysE/ArgO family amino acid transporter']\n", + "RAST ['LysR family transcriptional regulator ArgP']\n", + "RAST ['branched-chain amino acid aminotransferase']\n", + "RAST ['trans-aconitate 2-methyltransferase']\n", + "RAST ['VOC family protein']\n", + "RAST ['YafY family transcriptional regulator']\n", + "RAST ['pilus assembly protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['MFS transporter']\n", + "RAST ['aldo/keto reductase']\n", + "RAST ['LysE family translocator']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['DUF937 domain-containing protein']\n", + "RAST ['DUF853 domain-containing protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['RES family NAD+ phosphorylase']\n", + "RAST ['MbcA/ParS/Xre antitoxin family protein']\n", + "RAST ['organic hydroperoxide resistance protein']\n", + "RAST ['MarR family transcriptional regulator']\n", + "RAST ['L,D-transpeptidase']\n", + "RAST ['L,D-transpeptidase']\n", + "RAST ['prolyl oligopeptidase family serine peptidase']\n", + "RAST ['cisplatin damage response ATP-dependent DNA ligase']\n", + "RAST ['ligase-associated DNA damage response exonuclease']\n", + "RAST ['GGDEF domain-containing protein']\n", + "RAST ['MFS transporter']\n", + "RAST ['MarR family winged helix-turn-helix transcriptional regulator']\n", + "RAST ['sensor domain-containing diguanylate cyclase']\n", + "RAST ['glutathione S-transferase family protein']\n", + "RAST ['asparaginase']\n", + "RAST ['DUF3750 domain-containing protein']\n", + "RAST ['chloride channel protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['type II toxin-antitoxin system RelE/ParE family toxin']\n", + "RAST ['choline dehydrogenase']\n", + "RAST ['betaine-aldehyde dehydrogenase']\n", + "RAST ['transcriptional regulator BetI']\n", + "RAST ['type II toxin-antitoxin system ParD family antitoxin']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['NAD(P)H-quinone oxidoreductase']\n", + "RAST ['sulfate/molybdate ABC transporter ATP-binding protein']\n", + "RAST ['sulfate ABC transporter permease subunit CysW']\n", + "RAST ['sulfate ABC transporter permease subunit CysT']\n", + "RAST ['sulfate ABC transporter substrate-binding protein']\n", + "RAST ['phosphoadenylyl-sulfate reductase']\n", + "RAST ['sulfate adenylyltransferase subunit CysD']\n", + "RAST ['sulfate adenylyltransferase subunit CysN']\n", + "RAST ['hypothetical protein']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['dihydrodipicolinate synthase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['malate dehydrogenase (quinone)']\n", + "RAST ['AIPR family protein']\n", + "RAST ['MBL fold metallo-hydrolase']\n", + "RAST ['DCC1-like thiol-disulfide oxidoreductase family protein']\n", + "RAST ['DUF1499 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['pyruvate, phosphate dikinase']\n", + "RAST ['chromosome segregation protein SMC']\n", + "RAST ['DsbA family protein']\n", + "RAST ['DUF721 domain-containing protein']\n", + "RAST ['A/G-specific adenine glycosylase']\n", + "RAST ['HAD family phosphatase']\n", + "RAST ['site-specific DNA-methyltransferase']\n", + "RAST ['DUF5680 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['HAD family hydrolase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['threonine synthase']\n", + "RAST ['insulinase family protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['putative zinc-binding metallopeptidase']\n", + "RAST ['CsbD family protein']\n", + "RAST ['YqgE/AlgH family protein']\n", + "RAST ['cytochrome C biogenesis protein']\n", + "RAST ['peroxiredoxin']\n", + "RAST ['metal ABC transporter ATP-binding protein']\n", + "RAST ['metal ABC transporter permease']\n", + "RAST ['metal ABC transporter substrate-binding protein']\n", + "RAST ['Dabb family protein']\n", + "RAST ['ribonuclease HI']\n", + "RAST ['homoserine kinase']\n", + "RAST ['4-hydroxy-3-methylbut-2-enyl diphosphate reductase']\n", + "RAST ['SURF1 family protein']\n", + "RAST ['DUF983 domain-containing protein']\n", + "RAST ['cytochrome c oxidase subunit 3']\n", + "RAST ['cytochrome c oxidase assembly protein']\n", + "RAST ['heme o synthase']\n", + "RAST ['cytochrome c oxidase subunit I']\n", + "RAST ['cytochrome c oxidase subunit II']\n", + "RAST ['invasion associated locus B family protein']\n", + "RAST ['metalloprotease TldD']\n", + "RAST ['GrpB family protein']\n", + "RAST ['VOC family protein']\n", + "RAST ['HAD family phosphatase']\n", + "RAST ['pyrophosphatase']\n", + "RAST [\"pyridoxamine 5'-phosphate oxidase\"]\n", + "RAST ['hypothetical protein']\n", + "RAST ['DnaJ domain-containing protein']\n", + "RAST ['enoyl-ACP reductase FabI']\n", + "RAST ['phosphoglycerate mutase family protein']\n", + "RAST ['DUF1344 domain-containing protein']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['chorismate synthase']\n", + "RAST ['3,4-dihydroxy-2-butanone-4-phosphate synthase']\n", + "RAST ['winged helix-turn-helix domain-containing protein']\n", + "RAST ['energy-coupling factor ABC transporter ATP-binding protein']\n", + "RAST ['energy-coupling factor transporter transmembrane protein EcfT']\n", + "RAST ['biotin transporter BioY']\n", + "RAST ['histone deacetylase family protein']\n", + "RAST ['exodeoxyribonuclease VII small subunit']\n", + "RAST ['pirin family protein']\n", + "RAST ['1-deoxy-D-xylulose-5-phosphate synthase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['TlyA family RNA methyltransferase']\n", + "RAST ['class I SAM-dependent RNA methyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['crotonase/enoyl-CoA hydratase family protein']\n", + "RAST ['acyl-CoA dehydrogenase']\n", + "RAST ['transporter']\n", + "RAST ['BA14K family protein']\n", + "RAST ['BA14K family protein']\n", + "RAST ['hybrid-cluster NAD(P)-dependent oxidoreductase']\n", + "RAST ['aromatic ring-hydroxylating dioxygenase subunit alpha']\n", + "RAST ['hypothetical protein']\n", + "RAST ['threonylcarbamoyl-AMP synthase']\n", + "RAST ['FAD-binding oxidoreductase']\n", + "RAST ['DUF6101 family protein']\n", + "RAST ['4-hydroxybenzoate octaprenyltransferase']\n", + "RAST ['cyclopropane-fatty-acyl-phospholipid synthase family protein']\n", + "RAST ['RNA-binding transcriptional accessory protein']\n", + "RAST ['phosphoribosylamine--glycine ligase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['DUF523 domain-containing protein']\n", + "RAST ['glycine--tRNA ligase subunit beta']\n", + "RAST ['glycine--tRNA ligase subunit alpha']\n", + "RAST ['LemA family protein']\n", + "RAST ['3-phosphoshikimate 1-carboxyvinyltransferase']\n", + "RAST ['DUF2207 domain-containing protein']\n", + "RAST ['DUF2207 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['S49 family peptidase']\n", + "RAST ['tRNA1(Val) (adenine(37)-N6)-methyltransferase']\n", + "RAST ['DUF2007 domain-containing protein']\n", + "RAST ['polyprenyl synthetase family protein']\n", + "RAST ['tetratricopeptide repeat protein']\n", + "RAST [\"4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase\"]\n", + "RAST ['molybdenum cofactor biosynthesis protein B']\n", + "RAST ['glycosyltransferase family 2 protein']\n", + "RAST ['PA0069 family radical SAM protein']\n", + "RAST ['ribonuclease HII']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['F0F1 ATP synthase subunit B']\n", + "RAST ['F0F1 ATP synthase subunit B']\n", + "RAST ['F0F1 ATP synthase subunit C']\n", + "RAST ['F0F1 ATP synthase subunit A']\n", + "RAST ['AtpZ/AtpI family protein']\n", + "RAST ['cell wall hydrolase']\n", + "RAST ['potassium transporter Kup']\n", + "RAST ['magnesium/cobalt transporter CorA']\n", + "RAST ['iron-sulfur cluster carrier protein ApbC']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['LuxR C-terminal-related transcriptional regulator']\n", + "RAST ['IclR family transcriptional regulator']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['2-dehydro-3-deoxygalactonokinase']\n", + "RAST ['2-dehydro-3-deoxy-6-phosphogalactonate aldolase']\n", + "RAST ['SMP-30/gluconolactonase/LRE family protein']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['response regulator']\n", + "RAST ['DNA mismatch repair endonuclease MutL']\n", + "RAST ['DUF2093 domain-containing protein']\n", + "RAST ['DUF350 domain-containing protein']\n", + "RAST ['DUF1190 domain-containing protein']\n", + "RAST ['glutathionylspermidine synthase family protein']\n", + "RAST ['ferritin-like domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST [\"tetraacyldisaccharide 4'-kinase\"]\n", + "RAST ['HAD family hydrolase']\n", + "RAST ['lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase']\n", + "RAST ['DUF4170 domain-containing protein']\n", + "RAST [\"3'(2'),5'-bisphosphate nucleotidase CysQ\"]\n", + "RAST ['TldD/PmbA family protein']\n", + "RAST ['patatin-like phospholipase family protein']\n", + "RAST ['16S rRNA (guanine(966)-N(2))-methyltransferase RsmD']\n", + "RAST ['pseudouridine synthase']\n", + "RAST ['nucleoside deaminase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['isoleucine--tRNA ligase']\n", + "RAST ['bifunctional riboflavin kinase/FAD synthetase']\n", + "RAST ['TIGR01459 family HAD-type hydrolase']\n", + "RAST ['chromate efflux transporter']\n", + "RAST ['co-chaperone GroES']\n", + "RAST ['chaperonin GroEL']\n", + "RAST ['nuclear transport factor 2 family protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['DoxX family protein']\n", + "RAST ['GFA family protein']\n", + "RAST ['ATP phosphoribosyltransferase']\n", + "RAST ['ATP phosphoribosyltransferase regulatory subunit']\n", + "RAST ['VOC family protein']\n", + "RAST ['histidine--tRNA ligase']\n", + "RAST ['DUF2798 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF305 domain-containing protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['putative sulfate exporter family transporter']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DNA-3-methyladenine glycosylase I']\n", + "RAST ['L,D-transpeptidase']\n", + "RAST ['glycolate oxidase subunit GlcF']\n", + "RAST ['glycolate oxidase subunit GlcE']\n", + "RAST ['FAD-binding protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['DUF3422 family protein']\n", + "RAST ['glycosyltransferase family 1 protein']\n", + "RAST ['HAD-IIB family hydrolase']\n", + "RAST ['NUDIX hydrolase']\n", + "RAST ['inorganic phosphate transporter']\n", + "RAST ['16S rRNA (uracil(1498)-N(3))-methyltransferase']\n", + "RAST ['glutamate--cysteine ligase']\n", + "RAST ['DUF1127 domain-containing protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['hydrogen peroxide-inducible genes activator']\n", + "RAST ['MAPEG family protein']\n", + "RAST ['IMP dehydrogenase']\n", + "RAST ['MBL fold metallo-hydrolase']\n", + "RAST ['multidrug efflux MFS transporter']\n", + "RAST ['RlmE family RNA methyltransferase']\n", + "RAST ['Ppx/GppA family phosphatase']\n", + "RAST ['PAS domain-containing sensor histidine kinase']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['acetoacetate--CoA ligase']\n", + "RAST ['ABC transporter permease subunit']\n", + "RAST ['ABC transporter permease subunit']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['polyamine ABC transporter substrate-binding protein']\n", + "RAST ['short-chain fatty acyl-CoA regulator family protein']\n", + "RAST ['isocitrate lyase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['NAD(P)/FAD-dependent oxidoreductase']\n", + "RAST ['glutamine synthetase family protein']\n", + "RAST ['FAD-binding oxidoreductase']\n", + "RAST ['glucose-6-phosphate dehydrogenase']\n", + "RAST ['6-phosphogluconolactonase']\n", + "RAST ['phosphogluconate dehydratase']\n", + "RAST ['metallophosphoesterase']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['alpha-glucosidase family protein']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['substrate-binding domain-containing protein']\n", + "RAST ['bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD']\n", + "RAST ['hypothetical protein']\n", + "RAST ['flagellar basal body rod protein FlgB']\n", + "RAST ['flagellar basal body rod protein FlgC']\n", + "RAST ['flagellar hook-basal body complex protein FliE']\n", + "RAST ['flagellar basal-body rod protein FlgG']\n", + "RAST ['flagellar basal body P-ring formation chaperone FlgA']\n", + "RAST ['flagellar basal body P-ring protein FlgI']\n", + "RAST ['MotE family protein']\n", + "RAST ['flagellar basal body L-ring protein FlgH']\n", + "RAST ['flagellar basal body-associated FliL family protein']\n", + "RAST ['flagellar type III secretion system pore protein FliP']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['rod-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['flagellar type III secretion system protein FliR']\n", + "RAST ['flagellar biosynthesis protein FlhA']\n", + "RAST ['DUF1217 domain-containing protein']\n", + "RAST ['DNA gyrase inhibitor YacG']\n", + "RAST ['Maf-like protein']\n", + "RAST ['translation initiation factor IF-1']\n", + "RAST ['low molecular weight phosphatase family protein']\n", + "RAST ['UPF0262 family protein']\n", + "RAST ['histidinol dehydrogenase']\n", + "RAST ['DUF2948 family protein']\n", + "RAST ['UDP-N-acetylglucosamine 1-carboxyvinyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['flagellar biosynthetic protein FliQ']\n", + "RAST ['flagellar hook assembly protein FlgD']\n", + "RAST ['flagellar biosynthesis repressor FlbT']\n", + "RAST ['flagellar biosynthesis regulator FlaF']\n", + "RAST ['flagellar hook-associated family protein']\n", + "RAST ['flagellar hook-associated protein FlgK']\n", + "RAST ['flagellar hook protein FlgE']\n", + "RAST ['winged helix-turn-helix domain-containing protein']\n", + "RAST ['transglycosylase SLT domain-containing protein']\n", + "RAST ['flagellar hook-length control protein FliK']\n", + "RAST ['chemotaxis protein']\n", + "RAST ['MotB family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['flagellin']\n", + "RAST ['flagellin']\n", + "RAST ['flagellin']\n", + "RAST ['flagellin']\n", + "RAST ['glycosyl transferase']\n", + "RAST ['IS110 family transposase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['flagellar protein export ATPase FliI']\n", + "RAST ['flagellar basal-body rod protein FlgF']\n", + "RAST ['flagellar motor stator protein MotA']\n", + "RAST ['FliM/FliN family flagellar motor switch protein']\n", + "RAST ['flagellar motor switch protein FliN']\n", + "RAST ['flagellar motor switch protein FliG']\n", + "RAST ['flagellar biosynthesis protein FlhB']\n", + "RAST ['hypothetical protein']\n", + "RAST ['pyridoxal phosphate-dependent aminotransferase']\n", + "RAST ['large conductance mechanosensitive channel protein MscL']\n", + "RAST ['hybrid sensor histidine kinase/response regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['SH3 domain-containing protein']\n", + "RAST ['IS66 family transposase']\n", + "RAST ['IS5 family transposase']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['LuxR family transcriptional regulator']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['flagellar M-ring protein FliF']\n", + "RAST ['hypothetical protein']\n", + "RAST ['UDP-galactopyranose mutase']\n", + "RAST ['glycosyl transferase']\n", + "RAST ['MurR/RpiR family transcriptional regulator']\n", + "RAST ['aspartate/glutamate racemase family protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['chemoreceptor glutamine deamidase CheD']\n", + "RAST ['chemotaxis response regulator CheY2']\n", + "RAST ['protein-glutamate O-methylesterase CheB']\n", + "RAST ['protein-glutamate O-methyltransferase CheR']\n", + "RAST ['chemotaxis protein CheA']\n", + "RAST ['chemotaxis response regulator CheY1']\n", + "RAST ['STAS domain-containing protein']\n", + "RAST ['globin-coupled sensor protein']\n", + "RAST ['monovalent cation/H+ antiporter subunit A']\n", + "RAST ['Na+/H+ antiporter subunit C']\n", + "RAST ['monovalent cation/H+ antiporter subunit D']\n", + "RAST ['Na+/H+ antiporter subunit E']\n", + "RAST ['K+/H+ antiporter subunit F']\n", + "RAST ['monovalent cation/H(+) antiporter subunit G']\n", + "RAST ['dihydropyrimidinase']\n", + "RAST ['Zn-dependent hydrolase']\n", + "RAST ['ornithine cyclodeaminase family protein']\n", + "RAST ['K(+)-transporting ATPase subunit F']\n", + "RAST ['potassium-transporting ATPase subunit KdpA']\n", + "RAST ['potassium-transporting ATPase subunit KdpB']\n", + "RAST ['potassium-transporting ATPase subunit KdpC']\n", + "RAST ['sensor histidine kinase KdpD']\n", + "RAST ['response regulator']\n", + "RAST ['porin']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['4-oxalomesaconate tautomerase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['GGDEF domain-containing protein']\n", + "RAST ['DUF3597 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['FAD-dependent oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['acetyl-CoA C-acetyltransferase']\n", + "RAST ['acyl-CoA dehydrogenase C-terminal domain-containing protein']\n", + "RAST ['peptidoglycan-binding protein']\n", + "RAST ['sulfite exporter TauE/SafE family protein']\n", + "RAST ['TIGR02186 family protein']\n", + "RAST ['ligase-associated DNA damage response endonuclease PdeM']\n", + "RAST ['ligase-associated DNA damage response DEXH box helicase']\n", + "RAST ['Rrf2 family transcriptional regulator']\n", + "RAST ['carboxymuconolactone decarboxylase family protein']\n", + "RAST ['YitT family protein']\n", + "RAST ['YitT family protein']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['DUF6460 domain-containing protein']\n", + "RAST ['CAP domain-containing protein']\n", + "RAST ['quinone-dependent dihydroorotate dehydrogenase']\n", + "RAST ['DUF952 domain-containing protein']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['transporter substrate-binding domain-containing protein']\n", + "RAST ['extracellular solute-binding protein']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['ABC transporter permease subunit']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['sugar phosphate isomerase/epimerase']\n", + "RAST ['NAD(P)H oxidoreductase']\n", + "RAST ['cold-shock protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST [\"2'-deoxycytidine 5'-triphosphate deaminase\"]\n", + "RAST ['O-succinylhomoserine sulfhydrylase']\n", + "RAST ['Co2+/Mg2+ efflux protein ApaG']\n", + "RAST ['Hsp33 family molecular chaperone']\n", + "RAST ['ornithine carbamoyltransferase']\n", + "RAST ['aspartate aminotransferase family protein']\n", + "RAST ['GcrA family cell cycle regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['phosphate regulon transcriptional regulator PhoB']\n", + "RAST ['phosphate signaling complex protein PhoU']\n", + "RAST ['phosphate ABC transporter ATP-binding protein PstB']\n", + "RAST ['phosphate ABC transporter permease PstA']\n", + "RAST ['phosphate ABC transporter permease subunit PstC']\n", + "RAST ['substrate-binding domain-containing protein']\n", + "RAST ['phosphate regulon sensor histidine kinase PhoR']\n", + "RAST ['polyphosphate kinase 2']\n", + "RAST ['hypothetical protein']\n", + "RAST ['nitronate monooxygenase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF6074 family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['LytR C-terminal domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['dNTP triphosphohydrolase']\n", + "RAST ['thermonuclease family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['SOS response-associated peptidase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['SLATT domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ribonuclease HI']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['site-specific integrase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['YqaE/Pmp3 family membrane protein']\n", + "RAST ['DUF2177 family protein']\n", + "RAST ['ChrR family anti-sigma-E factor']\n", + "RAST ['sigma-70 family RNA polymerase sigma factor']\n", + "RAST ['FAD-dependent oxidoreductase']\n", + "RAST ['DUF1365 family protein']\n", + "RAST ['cyclopropane-fatty-acyl-phospholipid synthase family protein']\n", + "RAST ['DUF982 domain-containing protein']\n", + "RAST ['PRC-barrel domain-containing protein']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['Fe(3+) ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['long-chain fatty acid--CoA ligase']\n", + "RAST ['glucose-6-phosphate isomerase']\n", + "RAST ['MFS transporter']\n", + "RAST ['dihydrodipicolinate synthase family protein']\n", + "RAST ['LacI family transcriptional regulator']\n", + "RAST ['MFS transporter']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['dicarboxylate/amino acid:cation symporter']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Lrp/AsnC family transcriptional regulator']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['carbohydrate kinase']\n", + "RAST ['orotate phosphoribosyltransferase']\n", + "RAST ['dihydroorotase']\n", + "RAST ['4-hydroxyproline epimerase']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['HAMP domain-containing histidine kinase']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['50S ribosomal protein L34']\n", + "RAST ['ribonuclease P protein component']\n", + "RAST ['membrane protein insertase YidC']\n", + "RAST ['ribosome biogenesis GTP-binding protein YihA/YsxC']\n", + "RAST ['hypothetical protein']\n", + "RAST ['acetylglutamate kinase']\n", + "RAST ['DMT family transporter']\n", + "RAST [\"pyrimidine 5'-nucleotidase\"]\n", + "RAST ['EF-hand domain-containing protein']\n", + "RAST ['DUF1150 family protein']\n", + "RAST ['Hsp20 family protein']\n", + "RAST ['nucleoside hydrolase']\n", + "RAST ['30S ribosomal protein S10']\n", + "RAST ['50S ribosomal protein L3']\n", + "RAST ['50S ribosomal protein L4']\n", + "RAST ['50S ribosomal protein L23']\n", + "RAST ['50S ribosomal protein L2']\n", + "RAST ['30S ribosomal protein S19']\n", + "RAST ['50S ribosomal protein L22']\n", + "RAST ['30S ribosomal protein S3']\n", + "RAST ['50S ribosomal protein L16']\n", + "RAST ['50S ribosomal protein L29']\n", + "RAST ['30S ribosomal protein S17']\n", + "RAST ['50S ribosomal protein L14']\n", + "RAST ['50S ribosomal protein L24']\n", + "RAST ['50S ribosomal protein L5']\n", + "RAST ['30S ribosomal protein S14']\n", + "RAST ['30S ribosomal protein S8']\n", + "RAST ['50S ribosomal protein L6']\n", + "RAST ['50S ribosomal protein L18']\n", + "RAST ['30S ribosomal protein S5']\n", + "RAST ['50S ribosomal protein L30']\n", + "RAST ['50S ribosomal protein L15']\n", + "RAST ['preprotein translocase subunit SecY']\n", + "RAST ['adenylate kinase']\n", + "RAST ['30S ribosomal protein S13']\n", + "RAST ['30S ribosomal protein S11']\n", + "RAST ['DNA-directed RNA polymerase subunit alpha']\n", + "RAST ['50S ribosomal protein L17']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF817 domain-containing protein']\n", + "RAST ['DUF2809 domain-containing protein']\n", + "RAST ['protein-methionine-sulfoxide reductase heme-binding subunit MsrQ']\n", + "RAST ['protein-methionine-sulfoxide reductase catalytic subunit MsrP']\n", + "RAST ['hypothetical protein']\n", + "RAST ['dihydroxy-acid dehydratase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['serine hydrolase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DegQ family serine endoprotease']\n", + "RAST ['replication-associated recombination protein A']\n", + "RAST ['DUF1883 domain-containing protein']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['extensin family protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['TIGR02281 family clan AA aspartic protease']\n", + "RAST ['DUF1289 domain-containing protein']\n", + "RAST ['adenosylcobinamide-GDP ribazoletransferase']\n", + "RAST ['nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase']\n", + "RAST ['diacylglycerol kinase']\n", + "RAST ['HAMP domain-containing histidine kinase']\n", + "RAST ['thermonuclease family protein']\n", + "RAST ['uracil-DNA glycosylase family protein']\n", + "RAST ['Lrp/AsnC family transcriptional regulator']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['usg protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['MFS transporter']\n", + "RAST ['OmpA family protein']\n", + "RAST [\"pseudouridine-5'-phosphate glycosidase\"]\n", + "RAST ['carbohydrate kinase family protein']\n", + "RAST ['recombinase RecA']\n", + "RAST ['alanine--tRNA ligase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['lipoyl(octanoyl) transferase LipB']\n", + "RAST ['bifunctional diguanylate cyclase/phosphodiesterase']\n", + "RAST ['glutathione S-transferase family protein']\n", + "RAST ['NADP-dependent isocitrate dehydrogenase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['RNA methyltransferase']\n", + "RAST ['glutamate racemase']\n", + "RAST ['DUF2865 domain-containing protein']\n", + "RAST ['NADP-dependent malic enzyme']\n", + "RAST ['UDP-2,3-diacylglucosamine diphosphatase']\n", + "RAST ['dipeptide epimerase']\n", + "RAST ['MlaE family lipid ABC transporter permease subunit']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['MCE family protein']\n", + "RAST ['ABC-type transport auxiliary lipoprotein family protein']\n", + "RAST ['PACE efflux transporter']\n", + "RAST ['citrate (Si)-synthase']\n", + "RAST ['ComEC/Rec2 family competence protein']\n", + "RAST ['glutathione S-transferase family protein']\n", + "RAST ['GFA family protein']\n", + "RAST ['transcriptional repressor LexA']\n", + "RAST ['hypothetical protein']\n", + "RAST ['3-deoxy-8-phosphooctulonate synthase']\n", + "RAST ['phosphopyruvate hydratase']\n", + "RAST ['HIT family protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['glycerophosphodiester phosphodiesterase']\n", + "RAST ['RidA family protein']\n", + "RAST ['cell envelope integrity EipB family protein']\n", + "RAST ['30S ribosomal protein S2']\n", + "RAST ['translation elongation factor Ts']\n", + "RAST ['UMP kinase']\n", + "RAST ['ribosome recycling factor']\n", + "RAST ['isoprenyl transferase']\n", + "RAST ['phosphatidate cytidylyltransferase']\n", + "RAST ['RIP metalloprotease RseP']\n", + "RAST ['outer membrane protein assembly factor BamA']\n", + "RAST ['UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase']\n", + "RAST ['3-hydroxyacyl-ACP dehydratase FabZ']\n", + "RAST ['acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase']\n", + "RAST ['LpxI family protein']\n", + "RAST ['lipid-A-disaccharide synthase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['aldo/keto reductase']\n", + "RAST ['agmatinase']\n", + "RAST ['ribonuclease E/G']\n", + "RAST ['N-acetylmuramoyl-L-alanine amidase']\n", + "RAST ['penicillin-binding protein 1A']\n", + "RAST ['peptide chain release factor 2']\n", + "RAST ['isochorismatase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['NAD kinase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['FkbM family methyltransferase']\n", + "RAST ['GlsB/YeaQ/YmgE family stress response membrane protein']\n", + "RAST ['mechanosensitive ion channel family protein']\n", + "RAST ['FAD-dependent oxidoreductase']\n", + "RAST ['molybdopterin molybdotransferase MoeA']\n", + "RAST ['cyclic pyranopterin monophosphate synthase MoaC']\n", + "RAST ['indole-3-glycerol phosphate synthase TrpC']\n", + "RAST ['anthranilate phosphoribosyltransferase']\n", + "RAST ['peptidylprolyl isomerase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['M23 family metallopeptidase']\n", + "RAST ['sulfate/molybdate ABC transporter ATP-binding protein']\n", + "RAST ['sulfate ABC transporter permease subunit CysW']\n", + "RAST ['sulfate ABC transporter permease subunit CysT']\n", + "RAST ['thiosulfate ABC transporter substrate-binding protein CysP']\n", + "RAST ['DUF2934 domain-containing protein']\n", + "RAST ['saccharopine dehydrogenase family protein']\n", + "RAST ['carboxynorspermidine decarboxylase']\n", + "RAST ['DUF883 family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['UDP-glucose 4-epimerase GalE']\n", + "RAST ['PRC-barrel domain-containing protein']\n", + "RAST ['sensor histidine kinase']\n", + "RAST ['sensor histidine kinase']\n", + "RAST ['response regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['sigma-70 family RNA polymerase sigma factor']\n", + "RAST ['Lrp/AsnC ligand binding domain-containing protein']\n", + "RAST ['trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase']\n", + "RAST ['aldehyde dehydrogenase family protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['DMT family transporter']\n", + "RAST ['adenylate/guanylate cyclase domain-containing protein']\n", + "RAST ['UDP-glucose/GDP-mannose dehydrogenase family protein']\n", + "RAST ['NAD-dependent epimerase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['transposase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF1963 domain-containing protein']\n", + "RAST ['DUF1963 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['histidine phosphatase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['MbcA/ParS/Xre antitoxin family protein']\n", + "RAST ['RES family NAD+ phosphorylase']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['response regulator']\n", + "RAST ['DUF429 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['type II toxin-antitoxin system HipA family toxin']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['cation:proton antiporter']\n", + "RAST ['YiiG family protein']\n", + "RAST ['TetR family transcriptional regulator']\n", + "RAST ['FAD-dependent monooxygenase']\n", + "RAST ['nucleotidyltransferase and HEPN domain-containing protein']\n", + "RAST ['DUF3606 domain-containing protein']\n", + "RAST ['type IV secretory system conjugative DNA transfer family protein']\n", + "RAST ['Ti-type conjugative transfer relaxase TraA']\n", + "RAST ['IS66 family insertion sequence hypothetical protein']\n", + "RAST ['IS66 family insertion sequence element accessory protein TnpB']\n", + "RAST ['transposase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['type II toxin-antitoxin system prevent-host-death family antitoxin']\n", + "RAST ['MFS transporter']\n", + "RAST ['type II toxin-antitoxin system RelE/ParE family toxin']\n", + "RAST ['type II toxin-antitoxin system VapC family toxin']\n", + "RAST ['type II toxin-antitoxin system Phd/YefM family antitoxin']\n", + "RAST ['lipocalin family protein']\n", + "RAST ['DUF6030 family protein']\n", + "RAST ['MurR/RpiR family transcriptional regulator']\n", + "RAST ['sulfate transporter family protein']\n", + "RAST ['endonuclease III']\n", + "RAST ['DUF2244 domain-containing protein']\n", + "RAST ['bifunctional helix-turn-helix domain-containing protein/methylated-DNA--[protein]-cysteine S-methyltransferase']\n", + "RAST ['ribbon-helix-helix protein, CopG family']\n", + "RAST ['DUF4145 domain-containing protein']\n", + "RAST ['sugar-binding transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['transaldolase']\n", + "RAST ['IclR family transcriptional regulator']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['DUF1328 domain-containing protein']\n", + "RAST ['metal ABC transporter permease']\n", + "RAST ['metal ABC transporter permease']\n", + "RAST ['manganese/iron ABC transporter ATP-binding protein']\n", + "RAST ['metal ABC transporter substrate-binding protein']\n", + "RAST ['lysine--tRNA ligase']\n", + "RAST ['glutamate--tRNA ligase']\n", + "RAST ['SLC13 family permease']\n", + "RAST ['TerC family protein']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['HlyD family secretion protein']\n", + "RAST ['DHA2 family efflux MFS transporter permease subunit']\n", + "RAST ['LacI family DNA-binding transcriptional regulator']\n", + "RAST ['xylulokinase']\n", + "RAST ['xylose isomerase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['GlxA family transcriptional regulator']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['NAD(P)H-dependent oxidoreductase']\n", + "RAST ['methionine ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['MetQ/NlpA family ABC transporter substrate-binding protein']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['rhodanese-related sulfurtransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['CHAD domain-containing protein']\n", + "RAST ['CYTH domain-containing protein']\n", + "RAST ['2-dehydro-3-deoxy-phosphogluconate aldolase']\n", + "RAST ['tellurite resistance TerB family protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['non-ribosomal peptide synthetase']\n", + "RAST [\"4'-phosphopantetheinyl transferase superfamily protein\"]\n", + "RAST ['GGDEF domain-containing protein']\n", + "RAST ['PAS domain-containing protein']\n", + "RAST ['DUF4287 domain-containing protein']\n", + "RAST ['restriction endonuclease']\n", + "RAST ['hypothetical protein']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['Na+/H+ antiporter NhaA']\n", + "RAST ['bile acid:sodium symporter family protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['ATP-binding protein']\n", + "RAST ['nickel/cobalt transporter']\n", + "RAST ['DUF1007 family protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['ornithine/lysine decarboxylase']\n", + "RAST ['N-acetyltransferase']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['OmpW family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['WD40 repeat domain-containing protein']\n", + "RAST ['GTP-binding protein']\n", + "RAST ['creatininase family protein']\n", + "RAST ['MarR family transcriptional regulator']\n", + "RAST ['LacI family transcriptional regulator']\n", + "RAST ['2-hydroxyacid dehydrogenase']\n", + "RAST ['gamma-glutamyl-gamma-aminobutyrate hydrolase family protein']\n", + "RAST ['TRAP transporter substrate-binding protein']\n", + "RAST ['TRAP transporter large permease subunit']\n", + "RAST ['TRAP transporter small permease subunit']\n", + "RAST ['aa3-type cytochrome c oxidase subunit IV']\n", + "RAST ['hypothetical protein']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['nuclear transport factor 2 family protein']\n", + "RAST ['GGDEF domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['GrpB family protein']\n", + "RAST ['FAD-dependent oxidoreductase']\n", + "RAST ['FAD-dependent monooxygenase']\n", + "RAST ['antibiotic biosynthesis monooxygenase']\n", + "RAST ['NADP-dependent oxidoreductase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['aldo/keto reductase family oxidoreductase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['DEAD/DEAH box helicase family protein']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['efflux RND transporter periplasmic adaptor subunit']\n", + "RAST ['efflux RND transporter periplasmic adaptor subunit']\n", + "RAST ['efflux RND transporter permease subunit']\n", + "RAST ['tetratricopeptide repeat protein']\n", + "RAST ['30S ribosomal protein S21']\n", + "RAST ['sarcosine oxidase subunit beta family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['sarcosine oxidase subunit delta']\n", + "RAST ['sarcosine oxidase subunit alpha']\n", + "RAST ['sarcosine oxidase subunit gamma']\n", + "RAST ['PbsX family transcriptional regulator']\n", + "RAST ['type II toxin-antitoxin system PemK/MazF family toxin']\n", + "RAST ['APC family permease']\n", + "RAST ['hypothetical protein']\n", + "RAST ['nucleotidyl transferase AbiEii/AbiGii toxin family protein']\n", + "RAST ['DUF2332 family protein']\n", + "RAST ['MaoC family dehydratase']\n", + "RAST ['glycogen debranching protein GlgX']\n", + "RAST ['alpha-D-glucose phosphate-specific phosphoglucomutase']\n", + "RAST ['glycogen synthase GlgA']\n", + "RAST ['glucose-1-phosphate adenylyltransferase']\n", + "RAST ['1,4-alpha-glucan branching protein GlgB']\n", + "RAST ['glycogen/starch/alpha-glucan phosphorylase']\n", + "RAST ['VWA domain-containing protein']\n", + "RAST ['transglutaminase family protein']\n", + "RAST ['circularly permuted type 2 ATP-grasp protein']\n", + "RAST ['transglutaminase family protein']\n", + "RAST ['ABC transporter ATP-binding protein/permease']\n", + "RAST ['hypothetical protein']\n", + "RAST ['acyl-CoA thioesterase']\n", + "RAST ['porin family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['XRE family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF1376 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Fic family protein']\n", + "RAST ['terminase small subunit']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['head-tail connector protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['glycosyltransferase family 2 protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['lysozyme']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DedA family protein']\n", + "RAST ['DUF2256 domain-containing protein']\n", + "RAST ['ACT domain-containing protein']\n", + "RAST ['acetylglutamate kinase']\n", + "RAST ['extracellular solute-binding protein']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['alpha-N-arabinofuranosidase']\n", + "RAST ['metalloregulator ArsR/SmtB family transcription factor']\n", + "RAST ['response regulator']\n", + "RAST ['N-formylglutamate amidohydrolase']\n", + "RAST ['histidinol-phosphatase']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['Hsp20 family protein']\n", + "RAST ['bile acid:sodium symporter']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['XRE family transcriptional regulator']\n", + "RAST ['type II toxin-antitoxin system RelE/ParE family toxin']\n", + "RAST ['low specificity L-threonine aldolase']\n", + "RAST ['glutamate synthase large subunit']\n", + "RAST ['AbrB/MazE/SpoVT family DNA-binding domain-containing protein']\n", + "RAST ['type II toxin-antitoxin system VapC family toxin']\n", + "RAST ['glutamate synthase subunit beta']\n", + "RAST ['GlxA family transcriptional regulator']\n", + "RAST ['DJ-1/PfpI family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF459 domain-containing protein']\n", + "RAST ['lytic murein transglycosylase']\n", + "RAST ['UTP--glucose-1-phosphate uridylyltransferase GalU']\n", + "RAST ['outer membrane beta-barrel protein']\n", + "RAST ['KpsF/GutQ family sugar-phosphate isomerase']\n", + "RAST ['DMT family transporter']\n", + "RAST ['TetR family transcriptional regulator C-terminal domain-containing protein']\n", + "RAST ['NfeD family protein']\n", + "RAST ['SPFH/Band 7/PHB domain protein']\n", + "RAST ['ferrochelatase']\n", + "RAST [\"5'-nucleotidase C-terminal domain-containing protein\"]\n", + "RAST ['hypothetical protein']\n", + "RAST ['homospermidine synthase']\n", + "RAST ['sensor domain-containing diguanylate cyclase']\n", + "RAST ['aminotransferase class IV family protein']\n", + "RAST ['M3 family oligoendopeptidase']\n", + "RAST ['sigma-54 dependent transcriptional regulator']\n", + "RAST ['YcbK family protein']\n", + "RAST ['SRPBCC domain-containing protein']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['ice nucleation-like protein']\n", + "RAST ['pyruvate kinase']\n", + "RAST ['DUF1036 domain-containing protein']\n", + "RAST ['N-formylglutamate amidohydrolase']\n", + "RAST ['DUF1244 domain-containing protein']\n", + "RAST ['DUF2312 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['type B 50S ribosomal protein L36']\n", + "RAST ['5-(carboxyamino)imidazole ribonucleotide synthase']\n", + "RAST ['5-(carboxyamino)imidazole ribonucleotide mutase']\n", + "RAST ['DUF465 domain-containing protein']\n", + "RAST ['DUF465 domain-containing protein']\n", + "RAST ['sulfite exporter TauE/SafE family protein']\n", + "RAST ['thiamine phosphate synthase']\n", + "RAST ['sel1 repeat family protein']\n", + "RAST ['inositol monophosphatase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['peptidoglycan -binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['50S ribosomal protein L31']\n", + "RAST ['DUF1465 family protein']\n", + "RAST ['DUF1192 domain-containing protein']\n", + "RAST ['MFS transporter']\n", + "RAST ['hypothetical protein']\n", + "RAST ['2TM domain-containing protein']\n", + "RAST ['fructose-bisphosphate aldolase class I']\n", + "RAST ['type II toxin-antitoxin system RelE/ParE family toxin']\n", + "RAST ['putative addiction module antidote protein']\n", + "RAST ['phosphoglycerate kinase']\n", + "RAST ['potassium/proton antiporter']\n", + "RAST ['type I glyceraldehyde-3-phosphate dehydrogenase']\n", + "RAST ['transketolase']\n", + "RAST ['DUF4164 domain-containing protein']\n", + "RAST ['cell division protein ZapA']\n", + "RAST ['hemolysin family protein']\n", + "RAST ['5-formyltetrahydrofolate cyclo-ligase']\n", + "RAST ['TIGR00282 family metallophosphoesterase']\n", + "RAST ['MBL fold metallo-hydrolase']\n", + "RAST [\"pyridoxamine 5'-phosphate oxidase family protein\"]\n", + "RAST ['YebC/PmpR family DNA-binding transcriptional regulator']\n", + "RAST ['LLM class flavin-dependent oxidoreductase']\n", + "RAST ['crossover junction endodeoxyribonuclease RuvC']\n", + "RAST ['Holliday junction branch migration protein RuvA']\n", + "RAST ['AbrB/MazE/SpoVT family DNA-binding domain-containing protein']\n", + "RAST ['type II toxin-antitoxin system VapC family toxin']\n", + "RAST ['Holliday junction branch migration DNA helicase RuvB']\n", + "RAST ['metallophosphoesterase']\n", + "RAST ['DUF2945 domain-containing protein']\n", + "RAST ['DinB family protein']\n", + "RAST ['NUDIX hydrolase']\n", + "RAST ['NUDIX hydrolase']\n", + "RAST ['tol-pal system-associated acyl-CoA thioesterase']\n", + "RAST ['protein TolQ']\n", + "RAST ['protein TolR']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Tol-Pal system beta propeller repeat protein TolB']\n", + "RAST ['peptidoglycan-associated lipoprotein Pal']\n", + "RAST ['tol-pal system protein YbgF']\n", + "RAST ['tRNA lysidine(34) synthetase TilS']\n", + "RAST ['ATP-dependent zinc metalloprotease FtsH']\n", + "RAST ['phosphoglucosamine mutase']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['porin family protein']\n", + "RAST ['phosphoserine transaminase']\n", + "RAST ['phosphoglycerate dehydrogenase']\n", + "RAST ['Tim44 domain-containing protein']\n", + "RAST ['OpgC domain-containing protein']\n", + "RAST ['tRNA 2-thiouridine(34) synthase MnmA']\n", + "RAST ['hypothetical protein']\n", + "RAST ['porin family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['CsbD family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DNA starvation/stationary phase protection protein Dps']\n", + "RAST ['hypothetical protein']\n", + "RAST ['tripartite tricarboxylate transporter permease']\n", + "RAST ['tripartite tricarboxylate transporter TctB family protein']\n", + "RAST ['tripartite tricarboxylate transporter substrate binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['sensor histidine kinase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['putative addiction module antidote protein']\n", + "RAST ['type II toxin-antitoxin system RelE/ParE family toxin']\n", + "RAST ['formyltetrahydrofolate deformylase']\n", + "RAST ['heme utilization cystosolic carrier protein HutX']\n", + "RAST ['antibiotic biosynthesis monooxygenase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['heme ABC transporter ATP-binding protein']\n", + "RAST ['YbaN family protein']\n", + "RAST ['VOC family protein']\n", + "RAST ['uracil-DNA glycosylase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['VOC family protein']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['transglycosylase SLT domain-containing protein']\n", + "RAST ['RNA methyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['RluA family pseudouridine synthase']\n", + "RAST ['RNA polymerase sigma factor RpoH']\n", + "RAST ['hypothetical protein']\n", + "RAST ['adenylosuccinate synthase']\n", + "RAST ['DMT family transporter']\n", + "RAST ['hypothetical protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['3-keto-5-aminohexanoate cleavage protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['EipA family protein']\n", + "RAST ['histidine phosphotransferase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['cell cycle two-component system response regulator CtrA']\n", + "RAST ['flagellar export protein FliJ']\n", + "RAST ['DUF1153 domain-containing protein']\n", + "RAST [\"3'(2'),5'-bisphosphate nucleotidase CysQ\"]\n", + "RAST ['branched-chain amino acid ABC transporter permease']\n", + "RAST ['high-affinity branched-chain amino acid ABC transporter permease LivM']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['branched-chain amino acid ABC transporter substrate-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['AAA family ATPase']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['response regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['glutamine synthetase beta-grasp domain-containing protein']\n", + "RAST ['DUF2735 domain-containing protein']\n", + "RAST ['urea ABC transporter substrate-binding protein']\n", + "RAST ['urea ABC transporter permease subunit UrtB']\n", + "RAST ['urea ABC transporter permease subunit UrtC']\n", + "RAST ['urea ABC transporter ATP-binding protein UrtD']\n", + "RAST ['urea ABC transporter ATP-binding subunit UrtE']\n", + "RAST ['hypothetical protein']\n", + "RAST ['urease accessory protein UreD']\n", + "RAST ['urease subunit gamma']\n", + "RAST ['urease subunit beta']\n", + "RAST ['lysozyme inhibitor LprI family protein']\n", + "RAST ['urease subunit alpha']\n", + "RAST ['MFS transporter']\n", + "RAST ['sensor histidine kinase']\n", + "RAST ['sigma-54 dependent transcriptional regulator']\n", + "RAST ['GGDEF domain-containing protein']\n", + "RAST ['urease accessory protein UreE']\n", + "RAST ['urease accessory protein UreF']\n", + "RAST ['urease accessory protein UreG']\n", + "RAST ['cyclic nucleotide-binding domain-containing protein']\n", + "RAST ['HigA family addiction module antidote protein']\n", + "RAST ['type II toxin-antitoxin system RelE/ParE family toxin']\n", + "RAST ['efflux RND transporter permease subunit']\n", + "RAST ['efflux RND transporter periplasmic adaptor subunit']\n", + "RAST ['DUF2325 domain-containing protein']\n", + "RAST ['beta-glucosidase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['DUF2254 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['group II truncated hemoglobin']\n", + "RAST ['phosphomannomutase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['cyclopropane-fatty-acyl-phospholipid synthase family protein']\n", + "RAST ['DUF1295 domain-containing protein']\n", + "RAST ['DUF2147 domain-containing protein']\n", + "RAST ['DUF2177 family protein']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['metalloregulator ArsR/SmtB family transcription factor']\n", + "RAST ['arsenite efflux MFS transporter ArsK']\n", + "RAST ['arsenical resistance protein ArsH']\n", + "RAST ['arsenate reductase (glutaredoxin)']\n", + "RAST ['ACR3 family arsenite efflux transporter']\n", + "RAST ['arsenate reductase ArsC']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['ArsR family transcriptional regulator']\n", + "RAST ['PAS domain-containing protein']\n", + "RAST ['YeeE/YedE family protein']\n", + "RAST ['YeeE/YedE family protein']\n", + "RAST ['metalloregulator ArsR/SmtB family transcription factor']\n", + "RAST ['TIGR01244 family phosphatase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['MarR family winged helix-turn-helix transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['sugar ABC transporter substrate-binding protein ChvE']\n", + "RAST ['sugar ABC transporter ATP-binding protein GguA']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['GguC protein']\n", + "RAST ['VOC family protein']\n", + "RAST ['PAS domain-containing protein']\n", + "RAST ['DUF1349 domain-containing protein']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['MBL fold metallo-hydrolase']\n", + "RAST ['transglutaminase family protein']\n", + "RAST ['alpha-E domain-containing protein']\n", + "RAST ['circularly permuted type 2 ATP-grasp protein']\n", + "RAST ['L,D-transpeptidase']\n", + "RAST ['class II glutamine amidotransferase']\n", + "RAST ['DoxX family protein']\n", + "RAST ['response regulator']\n", + "RAST ['DEAD/DEAH box helicase']\n", + "RAST ['tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD']\n", + "RAST ['FAD-binding oxidoreductase']\n", + "RAST ['DUF1045 domain-containing protein']\n", + "RAST ['allantoinase PuuE']\n", + "RAST ['2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase']\n", + "RAST ['nucleotidyltransferase family protein']\n", + "RAST ['DUF86 domain-containing protein']\n", + "RAST ['ureidoglycolate lyase']\n", + "RAST ['hydroxyisourate hydrolase']\n", + "RAST ['metallophosphatase family protein']\n", + "RAST ['D-alanyl-D-alanine carboxypeptidase']\n", + "RAST ['alpha-hydroxy-acid oxidizing protein']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['RidA family protein']\n", + "RAST ['ester cyclase']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['guanine deaminase']\n", + "RAST ['urate hydroxylase PuuD']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['xanthine dehydrogenase accessory protein XdhC']\n", + "RAST ['xanthine dehydrogenase molybdopterin binding subunit']\n", + "RAST ['xanthine dehydrogenase small subunit']\n", + "RAST ['3-hydroxybutyrate dehydrogenase']\n", + "RAST ['glycerol kinase GlpK']\n", + "RAST ['LLM class flavin-dependent oxidoreductase']\n", + "RAST ['type I methionyl aminopeptidase']\n", + "RAST ['peptide antibiotic transporter SbmA']\n", + "RAST ['hypothetical protein']\n", + "RAST ['polysaccharide deacetylase family protein']\n", + "RAST ['NnrU family protein']\n", + "RAST ['tetratricopeptide repeat protein']\n", + "RAST ['ribosome biogenesis GTPase Der']\n", + "RAST ['DUF2026 family protein']\n", + "RAST ['bifunctional monoglucosyl/glucuronosyl diacylglycerol synthase']\n", + "RAST ['sugar kinase']\n", + "RAST ['alpha-glucosidase family protein']\n", + "RAST ['HD-GYP domain-containing protein']\n", + "RAST ['adenine deaminase']\n", + "RAST ['branched-chain amino acid ABC transporter substrate-binding protein']\n", + "RAST ['DUF3095 domain-containing protein']\n", + "RAST ['metalloregulator ArsR/SmtB family transcription factor']\n", + "RAST ['choline ABC transporter ATP-binding protein']\n", + "RAST ['choline ABC transporter permease subunit']\n", + "RAST ['choline ABC transporter substrate-binding protein']\n", + "RAST ['thymidine kinase']\n", + "RAST ['pseudoazurin']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF2333 family protein']\n", + "RAST ['LuxR family transcriptional regulator']\n", + "RAST ['TIGR00645 family protein']\n", + "RAST ['TonB-dependent hemoglobin/transferrin/lactoferrin family receptor']\n", + "RAST ['extensin family protein']\n", + "RAST ['anthranilate synthase']\n", + "RAST ['TIGR02117 family protein']\n", + "RAST ['LysE family translocator']\n", + "RAST ['VOC family protein']\n", + "RAST ['cation diffusion facilitator family transporter']\n", + "RAST ['preQ(1) synthase']\n", + "RAST ['DUF2076 domain-containing protein']\n", + "RAST ['HupE/UreJ family protein']\n", + "RAST ['ATP-dependent Clp protease proteolytic subunit']\n", + "RAST ['benzoate/H(+) symporter BenE family transporter']\n", + "RAST ['2-isopropylmalate synthase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['metallophosphoesterase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['NUDIX domain-containing protein']\n", + "RAST ['glutathione S-transferase family protein']\n", + "RAST ['N-acetyltransferase']\n", + "RAST ['MFS transporter']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['type II toxin-antitoxin system RelE/ParE family toxin']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF4159 domain-containing protein']\n", + "RAST ['DUF58 domain-containing protein']\n", + "RAST ['MoxR family ATPase']\n", + "RAST ['DUF1285 domain-containing protein']\n", + "RAST ['CoA pyrophosphatase']\n", + "RAST ['CCA tRNA nucleotidyltransferase']\n", + "RAST ['DUF1059 domain-containing protein']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['chemotaxis protein CheW']\n", + "RAST ['PAS domain-containing methyl-accepting chemotaxis protein']\n", + "RAST ['LuxR C-terminal-related transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['oxygen-dependent coproporphyrinogen oxidase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Na/Pi cotransporter family protein']\n", + "RAST [\"tRNA (cytidine(34)-2'-O)-methyltransferase\"]\n", + "RAST ['ABC transporter ATP-binding protein/permease']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['ABC transporter ATP-binding protein/permease']\n", + "RAST ['endonuclease/exonuclease/phosphatase family protein']\n", + "RAST ['ubiquinol-cytochrome c reductase iron-sulfur subunit']\n", + "RAST ['cytochrome b N-terminal domain-containing protein']\n", + "RAST ['cytochrome c1']\n", + "RAST ['GFA family protein']\n", + "RAST ['adenine phosphoribosyltransferase']\n", + "RAST ['MaoC family dehydratase']\n", + "RAST ['MaoC family dehydratase']\n", + "RAST ['redox-regulated ATPase YchF']\n", + "RAST ['exopolysaccharide biosynthesis protein']\n", + "RAST ['aminoacyl-tRNA hydrolase']\n", + "RAST ['transporter substrate-binding domain-containing protein']\n", + "RAST ['bifunctional diguanylate cyclase/phosphodiesterase']\n", + "RAST ['50S ribosomal protein L25/general stress protein Ctc']\n", + "RAST ['GAF domain-containing protein']\n", + "RAST ['aldehyde dehydrogenase family protein']\n", + "RAST ['glycosyltransferase family 39 protein']\n", + "RAST ['phosphatase PAP2 family protein']\n", + "RAST ['type II toxin-antitoxin system ParD family antitoxin']\n", + "RAST ['ribose-phosphate pyrophosphokinase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Xaa-Pro peptidase family protein']\n", + "RAST ['peptidoglycan editing factor PgeF']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['prolipoprotein diacylglyceryl transferase']\n", + "RAST ['accessory factor UbiK family protein']\n", + "RAST ['YbjN domain-containing protein']\n", + "RAST ['pyrroline-5-carboxylate reductase']\n", + "RAST ['tRNA-binding protein']\n", + "RAST ['HAMP domain-containing protein']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['MarR family transcriptional regulator']\n", + "RAST ['DUF1236 domain-containing protein']\n", + "RAST ['MBL fold metallo-hydrolase']\n", + "RAST ['cold-shock protein']\n", + "RAST ['DMT family transporter']\n", + "RAST ['hypothetical protein']\n", + "RAST ['pyridoxal phosphate-dependent aminotransferase']\n", + "RAST ['DUF1348 family protein']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['calcium:proton antiporter']\n", + "RAST ['DUF2188 domain-containing protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['NAD(P)H-binding protein']\n", + "RAST ['alkene reductase']\n", + "RAST ['ArsR family transcriptional regulator']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['thioredoxin-disulfide reductase']\n", + "RAST ['Lrp/AsnC family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['glycosyltransferase family 25 protein']\n", + "RAST ['alpha-1,2-fucosyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DegT/DnrJ/EryC1/StrS family aminotransferase']\n", + "RAST ['GDP-L-fucose synthase']\n", + "RAST ['GDP-mannose 4,6-dehydratase']\n", + "RAST ['glycosyltransferase family 25 protein']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['glycosyltransferase family 25 protein']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['glycosyltransferase family 4 protein']\n", + "RAST ['transcription elongation factor GreA']\n", + "RAST ['putative DNA modification/repair radical SAM protein']\n", + "RAST ['UdgX family uracil-DNA binding protein']\n", + "RAST ['YfdX family protein']\n", + "RAST ['carbamoyl-phosphate synthase large subunit']\n", + "RAST ['glutathione S-transferase']\n", + "RAST ['zinc metallopeptidase']\n", + "RAST ['DUF2309 domain-containing protein']\n", + "RAST ['oxidoreductase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['DUF2938 domain-containing protein']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['MATE family efflux transporter']\n", + "RAST ['glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit']\n", + "RAST ['GatB/YqeY domain-containing protein']\n", + "RAST ['DNA primase']\n", + "RAST ['RNA polymerase sigma factor RpoD']\n", + "RAST ['DUF930 domain-containing protein']\n", + "RAST ['GAF domain-containing protein']\n", + "RAST ['secondary thiamine-phosphate synthase enzyme YjbQ']\n", + "RAST ['hypothetical protein']\n", + "RAST ['SIMPL domain-containing protein']\n", + "RAST ['RDD family protein']\n", + "RAST ['RDD family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['AGE family epimerase/isomerase']\n", + "RAST ['methionine synthase']\n", + "RAST ['S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase']\n", + "RAST ['DMT family transporter']\n", + "RAST ['bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU']\n", + "RAST ['glutamine--fructose-6-phosphate transaminase (isomerizing)']\n", + "RAST ['N-acetyltransferase']\n", + "RAST ['DUF502 domain-containing protein']\n", + "RAST ['MFS transporter']\n", + "RAST ['hypothetical protein']\n", + "RAST ['zinc-dependent alcohol dehydrogenase family protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease subunit']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['MurR/RpiR family transcriptional regulator']\n", + "RAST ['N-formylglutamate amidohydrolase']\n", + "RAST ['amino acid permease']\n", + "RAST ['glutamine synthetase family protein']\n", + "RAST ['aldehyde dehydrogenase family protein']\n", + "RAST ['iron-containing alcohol dehydrogenase']\n", + "RAST ['VOC family protein']\n", + "RAST ['ParA family protein']\n", + "RAST ['type II toxin-antitoxin system HigA family antitoxin']\n", + "RAST ['type II toxin-antitoxin system HigB family toxin']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['MFS transporter']\n", + "RAST ['L,D-transpeptidase']\n", + "RAST ['aldose 1-epimerase family protein']\n", + "RAST ['TIGR01244 family phosphatase']\n", + "RAST ['RidA family protein']\n", + "RAST [\"pyridoxamine 5'-phosphate oxidase family protein\"]\n", + "RAST ['thiamine pyrophosphate-binding protein']\n", + "RAST ['CoA transferase']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['energy-dependent translational throttle protein EttA']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['VOC family protein']\n", + "RAST ['metalloregulator ArsR/SmtB family transcription factor']\n", + "RAST ['methylenetetrahydrofolate reductase [NAD(P)H]']\n", + "RAST ['lytic murein transglycosylase']\n", + "RAST ['glycoside hydrolase family 25 protein']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['DUF3419 family protein']\n", + "RAST ['lytic transglycosylase domain-containing protein']\n", + "RAST ['LysE family transporter']\n", + "RAST ['pyrophosphate--fructose-6-phosphate 1-phosphotransferase']\n", + "RAST ['DnaJ family molecular chaperone']\n", + "RAST ['N-acetylmuramoyl-L-alanine amidase']\n", + "RAST ['transglycosylase SLT domain-containing protein']\n", + "RAST ['FAD-dependent oxidoreductase']\n", + "RAST ['FAD-dependent oxidoreductase']\n", + "RAST ['division/cell wall cluster transcriptional repressor MraZ']\n", + "RAST ['16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH']\n", + "RAST ['hypothetical protein']\n", + "RAST ['penicillin-binding protein 2']\n", + "RAST ['UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase']\n", + "RAST ['UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase']\n", + "RAST ['phospho-N-acetylmuramoyl-pentapeptide-transferase']\n", + "RAST ['UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase']\n", + "RAST ['putative lipid II flippase FtsW']\n", + "RAST ['undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase']\n", + "RAST ['UDP-N-acetylmuramate--L-alanine ligase']\n", + "RAST ['UDP-N-acetylmuramate dehydrogenase']\n", + "RAST ['MHS family MFS transporter']\n", + "RAST ['D-alanine--D-alanine ligase']\n", + "RAST ['cell division protein FtsQ/DivIB']\n", + "RAST ['cell division protein FtsA']\n", + "RAST ['cell division protein FtsZ']\n", + "RAST ['UDP-3-O-acyl-N-acetylglucosamine deacetylase']\n", + "RAST ['outer membrane protein assembly factor BamD']\n", + "RAST ['DNA repair protein RecN']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['VOC family protein']\n", + "RAST ['LysE family translocator']\n", + "RAST ['NAD-dependent DNA ligase LigA']\n", + "RAST ['M50 family metallopeptidase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['EamA family transporter']\n", + "RAST [\"3'-5' exonuclease\"]\n", + "RAST ['CreA family protein']\n", + "RAST ['chemotaxis protein CheW']\n", + "RAST ['hypothetical protein']\n", + "RAST ['glycerophosphodiester phosphodiesterase']\n", + "RAST ['50S ribosomal protein L11 methyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['aminopeptidase P family protein']\n", + "RAST ['AzlD family protein']\n", + "RAST ['AzlC family ABC transporter permease']\n", + "RAST ['DUF2164 domain-containing protein']\n", + "RAST ['bifunctional nicotinamidase/pyrazinamidase']\n", + "RAST ['DUF2778 domain-containing protein']\n", + "RAST ['DMT family transporter']\n", + "RAST ['DMT family transporter']\n", + "RAST ['glycosyltransferase family 25 protein']\n", + "RAST ['UvrD-helicase domain-containing protein']\n", + "RAST ['efflux RND transporter periplasmic adaptor subunit']\n", + "RAST ['efflux RND transporter permease subunit']\n", + "RAST ['FAD-binding protein']\n", + "RAST ['AsmA family protein']\n", + "RAST ['ribbon-helix-helix domain-containing protein']\n", + "RAST ['DUF4169 family protein']\n", + "RAST ['SspB family protein']\n", + "RAST ['DUF2853 family protein']\n", + "RAST ['thymidylate synthase']\n", + "RAST ['dihydrofolate reductase']\n", + "RAST ['FtsH protease activity modulator HflK']\n", + "RAST ['protease modulator HflC']\n", + "RAST ['Do family serine endopeptidase']\n", + "RAST ['LLM class flavin-dependent oxidoreductase']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['phosphoserine phosphatase SerB']\n", + "RAST ['tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA']\n", + "RAST ['DUF87 domain-containing protein']\n", + "RAST ['acetolactate synthase 3 large subunit']\n", + "RAST ['acetolactate synthase small subunit']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['aldo/keto reductase']\n", + "RAST ['LysE family translocator']\n", + "RAST ['DUF2269 domain-containing protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['ATP-dependent RecD-like DNA helicase']\n", + "RAST ['MerR family transcriptional regulator']\n", + "RAST [\"pyridoxine 5'-phosphate synthase\"]\n", + "RAST ['NAD(P)/FAD-dependent oxidoreductase']\n", + "RAST ['NAD(P)-dependent alcohol dehydrogenase']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['ketol-acid reductoisomerase']\n", + "RAST ['RbsD/FucU family protein']\n", + "RAST ['PLP-dependent aminotransferase family protein']\n", + "RAST ['PhzF family phenazine biosynthesis protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['endonuclease']\n", + "RAST ['DUF4269 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['J domain-containing protein']\n", + "RAST ['DUF922 domain-containing protein']\n", + "RAST ['PRC-barrel domain-containing protein']\n", + "RAST ['NACHT domain-containing protein']\n", + "RAST ['esterase family protein']\n", + "RAST ['excinuclease ABC subunit UvrB']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['PepSY domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['DUF1800 domain-containing protein']\n", + "RAST ['DUF1501 domain-containing protein']\n", + "RAST ['manganese-binding transcriptional regulator MntR']\n", + "RAST ['Nramp family divalent metal transporter']\n", + "RAST ['acyl-CoA thioesterase']\n", + "RAST ['RNA methyltransferase']\n", + "RAST ['TerC family protein']\n", + "RAST ['elongation factor Tu']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['preprotein translocase subunit SecE']\n", + "RAST ['transcription termination/antitermination protein NusG']\n", + "RAST ['50S ribosomal protein L11']\n", + "RAST ['50S ribosomal protein L1']\n", + "RAST ['50S ribosomal protein L10']\n", + "RAST ['50S ribosomal protein L7/L12']\n", + "RAST ['DNA-directed RNA polymerase subunit beta']\n", + "RAST [\"DNA-directed RNA polymerase subunit beta'\"]\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['sulfite exporter TauE/SafE family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['30S ribosomal protein S12']\n", + "RAST ['30S ribosomal protein S7']\n", + "RAST ['elongation factor G']\n", + "RAST ['glycerol kinase']\n", + "RAST ['NAD(P)/FAD-dependent oxidoreductase']\n", + "RAST ['NAD(P)/FAD-dependent oxidoreductase']\n", + "RAST ['ethanolamine ammonia-lyase subunit EutC']\n", + "RAST ['ethanolamine ammonia-lyase subunit EutB']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['RraA family protein']\n", + "RAST ['carbon-nitrogen hydrolase family protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['proline iminopeptidase-family hydrolase']\n", + "RAST ['LuxR family transcriptional regulator']\n", + "RAST ['proline iminopeptidase-family hydrolase']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['cytochrome ubiquinol oxidase subunit I']\n", + "RAST ['cytochrome d ubiquinol oxidase subunit II']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['glycosyltransferase family 4 protein']\n", + "RAST ['glycosyltransferase family 1 protein']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['cold-shock protein']\n", + "RAST ['YihY/virulence factor BrkB family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['CHASE3 domain-containing protein']\n", + "RAST ['sensor domain-containing diguanylate cyclase']\n", + "RAST ['ATP-dependent helicase']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['Zn-dependent hydrolase']\n", + "RAST ['aminotransferase class III-fold pyridoxal phosphate-dependent enzyme']\n", + "RAST ['phosphotransferase']\n", + "RAST ['amidase']\n", + "RAST ['aspartate aminotransferase family protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['glyoxylate/hydroxypyruvate reductase A']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST [\"GTP 3',8-cyclase MoaA\"]\n", + "RAST ['FAD-dependent oxidoreductase']\n", + "RAST ['ferredoxin family protein']\n", + "RAST ['molybdopterin-dependent oxidoreductase']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['aspartate/glutamate racemase family protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['hydantoinase/oxoprolinase family protein']\n", + "RAST ['DUF917 domain-containing protein']\n", + "RAST ['DUF917 domain-containing protein']\n", + "RAST ['LuxR C-terminal-related transcriptional regulator']\n", + "RAST ['HD-GYP domain-containing protein']\n", + "RAST ['transcriptional regulator']\n", + "RAST ['glycine betaine ABC transporter substrate-binding protein']\n", + "RAST ['proline/glycine betaine ABC transporter permease']\n", + "RAST ['glycine betaine/L-proline ABC transporter ATP-binding protein ProV']\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['TonB-dependent siderophore receptor']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['Fe(3+)-hydroxamate ABC transporter permease FhuB']\n", + "RAST ['hypothetical protein']\n", + "RAST ['molybdopterin-dependent oxidoreductase']\n", + "RAST ['bifunctional diguanylate cyclase/phosphodiesterase']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['NADH:flavin oxidoreductase']\n", + "RAST ['DEAD/DEAH box helicase']\n", + "RAST ['hydroxyacid dehydrogenase']\n", + "RAST ['DUF4394 domain-containing protein']\n", + "RAST ['sigma-70 family RNA polymerase sigma factor']\n", + "RAST ['anti-sigma factor']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ribosome small subunit-dependent GTPase A']\n", + "RAST ['NAD(P)-dependent oxidoreductase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['efflux RND transporter periplasmic adaptor subunit']\n", + "RAST ['multidrug efflux RND transporter permease subunit']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter permease UgpA']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter permease UgpE']\n", + "RAST ['sn-glycerol-3-phosphate import ATP-binding protein UgpC']\n", + "RAST ['asparaginase']\n", + "RAST ['FCD domain-containing protein']\n", + "RAST ['polysaccharide deacetylase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['GTP-binding protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['FGGY-family carbohydrate kinase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['ribose ABC transporter permease']\n", + "RAST ['sugar ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['gamma-glutamyltransferase']\n", + "RAST ['CocE/NonD family hydrolase']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DNA polymerase IV']\n", + "RAST ['DNA polymerase III subunit epsilon']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['M14 family metallopeptidase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['flippase-like domain-containing protein']\n", + "RAST ['FkbM family methyltransferase']\n", + "RAST ['CDP-alcohol phosphatidyltransferase family protein']\n", + "RAST ['GTP cyclohydrolase II RibA']\n", + "RAST ['zinc-binding alcohol dehydrogenase']\n", + "RAST ['6-carboxytetrahydropterin synthase']\n", + "RAST ['glycosyltransferase family 4 protein']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['RibD family protein']\n", + "RAST ['cytochrome b']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['gamma-glutamyltransferase family protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['FCD domain-containing protein']\n", + "RAST ['inositol monophosphatase family protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['sensor histidine kinase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['sensor domain-containing diguanylate cyclase']\n", + "RAST ['GTP-binding protein']\n", + "RAST ['D-alanyl-D-alanine carboxypeptidase']\n", + "RAST ['M20 family metallopeptidase']\n", + "RAST ['ParA family protein']\n", + "RAST ['SIR2 family protein']\n", + "RAST ['ETC complex I subunit']\n", + "RAST ['hypothetical protein']\n", + "RAST ['efflux RND transporter periplasmic adaptor subunit']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['transcription elongation factor GreA']\n", + "RAST ['MYG1 family protein']\n", + "RAST ['Fe-S cluster assembly scaffold SufA']\n", + "RAST ['SUF system Fe-S cluster assembly protein']\n", + "RAST ['cysteine desulfurase']\n", + "RAST ['Fe-S cluster assembly protein SufD']\n", + "RAST ['Fe-S cluster assembly ATPase SufC']\n", + "RAST ['Fe-S cluster assembly protein SufB']\n", + "RAST ['cysteine desulfurase']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['tyrosine--tRNA ligase']\n", + "RAST ['lipocalin family protein']\n", + "RAST ['VOC family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF1127 domain-containing protein']\n", + "RAST ['PLP-dependent aminotransferase family protein']\n", + "RAST ['phosphoribosylformylglycinamidine synthase subunit PurL']\n", + "RAST ['BolA family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['polysaccharide deacetylase family protein']\n", + "RAST ['Grx4 family monothiol glutaredoxin']\n", + "RAST ['multidrug effflux MFS transporter']\n", + "RAST ['inositol monophosphatase family protein']\n", + "RAST ['inositol monophosphatase family protein']\n", + "RAST ['tRNA 2-thiocytidine(32) synthetase TtcA']\n", + "RAST ['glutaminase']\n", + "RAST ['murein L,D-transpeptidase']\n", + "RAST ['class II fumarate hydratase']\n", + "RAST ['GGDEF domain-containing protein']\n", + "RAST [\"pyridoxamine 5'-phosphate oxidase family protein\"]\n", + "RAST ['monovalent cation:proton antiporter-2 (CPA2) family protein']\n", + "RAST ['DUF971 domain-containing protein']\n", + "RAST ['carbon-nitrogen hydrolase family protein']\n", + "RAST [\"GTP 3',8-cyclase MoaA\"]\n", + "RAST ['DMT family transporter']\n", + "RAST ['multidrug effflux MFS transporter']\n", + "RAST ['molybdenum cofactor guanylyltransferase MobA']\n", + "RAST ['molybdopterin-guanine dinucleotide biosynthesis protein B']\n", + "RAST ['peptidoglycan DD-metalloendopeptidase family protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['formate dehydrogenase subunit gamma']\n", + "RAST ['NADH-quinone oxidoreductase subunit NuoF']\n", + "RAST ['formate dehydrogenase subunit alpha']\n", + "RAST ['formate dehydrogenase accessory sulfurtransferase FdhD']\n", + "RAST ['formate dehydrogenase subunit delta']\n", + "RAST ['OFA family MFS transporter']\n", + "RAST ['protein-L-isoaspartate(D-aspartate) O-methyltransferase']\n", + "RAST [\"5'/3'-nucleotidase SurE\"]\n", + "RAST ['serine--tRNA ligase']\n", + "RAST ['twin-arginine translocase subunit TatC']\n", + "RAST ['Sec-independent protein translocase protein TatB']\n", + "RAST ['twin-arginine translocase TatA/TatE family subunit']\n", + "RAST ['SMC-Scp complex subunit ScpB']\n", + "RAST ['segregation/condensation protein A']\n", + "RAST ['beta-N-acetylhexosaminidase']\n", + "RAST ['SPOR domain-containing protein']\n", + "RAST ['arginine--tRNA ligase']\n", + "RAST ['deoxyguanosinetriphosphate triphosphohydrolase']\n", + "RAST ['iron-sulfur cluster insertion protein ErpA']\n", + "RAST ['exodeoxyribonuclease III']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['sel1 repeat family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['OmpP1/FadL family transporter']\n", + "RAST ['valine--tRNA ligase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['peroxiredoxin']\n", + "RAST ['ferritin-like domain-containing protein']\n", + "RAST ['peptidoglycan DD-metalloendopeptidase family protein']\n", + "RAST ['DEAD/DEAH box helicase']\n", + "RAST ['NUDIX domain-containing protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ribulose-phosphate 3-epimerase']\n", + "RAST ['adenylosuccinate lyase']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['ATPase inhibitor subunit zeta']\n", + "RAST ['phosphoribosylaminoimidazolesuccinocarboxamide synthase']\n", + "RAST ['phosphoribosylformylglycinamidine synthase subunit PurS']\n", + "RAST ['phosphoribosylformylglycinamidine synthase subunit PurQ']\n", + "RAST ['hypothetical protein']\n", + "RAST ['xanthine phosphoribosyltransferase']\n", + "RAST ['redox-sensitive transcriptional activator SoxR']\n", + "RAST ['histidine phosphatase family protein']\n", + "RAST ['vitamin B12-dependent ribonucleotide reductase']\n", + "RAST ['DUF2971 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease subunit']\n", + "RAST ['oligopeptide ABC transporter permease OppB']\n", + "RAST ['peptide ABC transporter substrate-binding protein']\n", + "RAST ['DeoR/GlpR family DNA-binding transcription regulator']\n", + "RAST ['glycerol-3-phosphate dehydrogenase']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['DUF2160 domain-containing protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['LLM class flavin-dependent oxidoreductase']\n", + "RAST ['glycine betaine/L-proline ABC transporter ATP-binding protein']\n", + "RAST ['proline/glycine betaine ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['fructose-bisphosphate aldolase class II']\n", + "RAST ['peroxiredoxin']\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['DUF2171 domain-containing protein']\n", + "RAST ['FAD/NAD(P)-binding protein']\n", + "RAST ['MOSC domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST [\"2'-5' RNA ligase family protein\"]\n", + "RAST ['DUF2188 domain-containing protein']\n", + "RAST ['DMT family transporter']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['DNA oxidative demethylase AlkB']\n", + "RAST ['hypothetical protein']\n", + "RAST ['aldo/keto reductase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['GGDEF domain-containing protein']\n", + "RAST ['metallophosphoesterase']\n", + "RAST ['dihydroxy-acid dehydratase family protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['sugar ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['sugar ABC transporter permease YjfF']\n", + "RAST ['FadR family transcriptional regulator']\n", + "RAST ['error-prone DNA polymerase']\n", + "RAST ['DNA polymerase Y family protein']\n", + "RAST ['ImuA family protein']\n", + "RAST ['O-antigen ligase family protein']\n", + "RAST ['polysaccharide biosynthesis/export family protein']\n", + "RAST ['sugar transferase']\n", + "RAST ['type 1 glutamine amidotransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['amino acid ABC transporter substrate-binding protein']\n", + "RAST ['amino acid ABC transporter substrate-binding protein']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ROK family protein']\n", + "RAST ['N-acetylglucosamine-6-phosphate deacetylase']\n", + "RAST ['SIS domain-containing protein']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['M81 family metallopeptidase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['RidA family protein']\n", + "RAST ['MurR/RpiR family transcriptional regulator']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['family 20 glycosylhydrolase']\n", + "RAST ['M81 family metallopeptidase']\n", + "RAST ['MFS transporter']\n", + "RAST ['copper homeostasis protein CutC']\n", + "RAST ['diguanylate cyclase']\n", + "RAST ['carboxy terminal-processing peptidase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ribonuclease HI']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ceramide glucosyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['glycosyltransferase family 4 protein']\n", + "RAST ['glycosyltransferase family 4 protein']\n", + "RAST ['polysaccharide deacetylase family protein']\n", + "RAST ['O-antigen ligase family protein']\n", + "RAST ['GumC family protein']\n", + "RAST ['lipopolysaccharide biosynthesis protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['SDR family NAD(P)-dependent oxidoreductase']\n", + "RAST ['cryptochrome/photolyase family protein']\n", + "RAST ['BA14K family protein']\n", + "RAST ['outer membrane beta-barrel protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['sugar phosphate isomerase/epimerase']\n", + "RAST ['superoxide dismutase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease subunit']\n", + "RAST ['ABC transporter permease subunit']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['dipeptide ABC transporter ATP-binding protein']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['PLP-dependent cysteine synthase family protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['low temperature requirement protein A']\n", + "RAST ['hypothetical protein']\n", + "RAST ['CHASE3 domain-containing protein']\n", + "RAST ['response regulator']\n", + "RAST ['response regulator']\n", + "RAST ['L,D-transpeptidase']\n", + "RAST ['murein L,D-transpeptidase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['DNA-3-methyladenine glycosylase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['7-carboxy-7-deazaguanine synthase QueE']\n", + "RAST ['6-carboxytetrahydropterin synthase QueD']\n", + "RAST ['7-cyano-7-deazaguanine synthase QueC']\n", + "RAST ['RNA polymerase sigma factor']\n", + "RAST ['FecR family protein']\n", + "RAST ['TonB-dependent receptor']\n", + "RAST ['MarR family transcriptional regulator']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['sugar phosphate isomerase/epimerase']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['response regulator']\n", + "RAST ['STAS domain-containing protein']\n", + "RAST ['response regulator']\n", + "RAST ['chemotaxis protein CheA']\n", + "RAST ['chemotaxis protein CheW']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein']\n", + "RAST ['SIR2 family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['IS5 family transposase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['aldo/keto reductase']\n", + "RAST ['IS66 family transposase']\n", + "RAST ['IS66 family insertion sequence element accessory protein TnpB']\n", + "RAST ['transposase']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['SMI1/KNR4 family protein']\n", + "RAST ['MFS transporter']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['GrpB family protein']\n", + "RAST ['XdhC family protein']\n", + "RAST ['xanthine dehydrogenase family protein molybdopterin-binding subunit']\n", + "RAST ['xanthine dehydrogenase family protein subunit M']\n", + "RAST ['aldehyde dehydrogenase iron-sulfur subunit']\n", + "RAST ['adenylate/guanylate cyclase domain-containing protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['MFS transporter']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['carboxymuconolactone decarboxylase family protein']\n", + "RAST ['cupin domain-containing protein']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['tyrosine-type recombinase/integrase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['tyrosine-type recombinase/integrase']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['J domain-containing protein']\n", + "RAST [\"3'-5' exonuclease\"]\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ABC transporter ATP-binding protein/permease']\n", + "RAST ['DUF1810 domain-containing protein']\n", + "RAST ['DUF4112 domain-containing protein']\n", + "RAST ['Atu4866 domain-containing protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['MFS transporter']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF4174 domain-containing protein']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['ABC transporter ATP-binding protein/permease']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['3-oxoacyl-ACP reductase FabG']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['dihydrolipoyl dehydrogenase']\n", + "RAST ['2-oxo acid dehydrogenase subunit E2']\n", + "RAST ['alpha-ketoacid dehydrogenase subunit beta']\n", + "RAST ['thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha']\n", + "RAST ['Lrp/AsnC family transcriptional regulator']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['acyl-CoA synthetase']\n", + "RAST ['SDR family NAD(P)-dependent oxidoreductase']\n", + "RAST ['acetyl-CoA C-acyltransferase']\n", + "RAST ['acyl-CoA dehydrogenase family protein']\n", + "RAST ['enoyl-CoA hydratase/isomerase family protein']\n", + "RAST ['enoyl-CoA hydratase/isomerase family protein']\n", + "RAST ['3-hydroxyisobutyrate dehydrogenase']\n", + "RAST ['choline-sulfatase']\n", + "RAST ['choline ABC transporter substrate-binding protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['type I secretion system permease/ATPase']\n", + "RAST ['HlyD family type I secretion periplasmic adaptor subunit']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DHA2 family efflux MFS transporter permease subunit']\n", + "RAST ['HlyD family secretion protein']\n", + "RAST ['RDD family protein']\n", + "RAST ['stage II sporulation protein M']\n", + "RAST ['DUF58 domain-containing protein']\n", + "RAST ['MoxR family ATPase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF805 domain-containing protein']\n", + "RAST ['catalase']\n", + "RAST ['LacI family transcriptional regulator']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['amino acid ABC transporter permease/ATP-binding protein']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['FAD-binding oxidoreductase']\n", + "RAST ['DUF2218 domain-containing protein']\n", + "RAST ['alpha-glucosidase']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['LLM class flavin-dependent oxidoreductase']\n", + "RAST ['aldo/keto reductase']\n", + "RAST ['flavin reductase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['mandelate racemase/muconate lactonizing enzyme family protein']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['sugar ABC transporter substrate-binding protein']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['mandelate racemase/muconate lactonizing enzyme family protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['MurR/RpiR family transcriptional regulator']\n", + "RAST ['MFS transporter']\n", + "RAST ['GAF domain-containing protein']\n", + "RAST ['amidohydrolase family protein']\n", + "RAST ['FGGY-family carbohydrate kinase']\n", + "RAST ['L-rhamnose mutarotase']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['sugar ABC transporter ATP-binding protein']\n", + "RAST ['rhamnose ABC transporter substrate-binding protein']\n", + "RAST ['DeoR/GlpR family DNA-binding transcription regulator']\n", + "RAST ['bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase']\n", + "RAST ['L-rhamnose catabolism isomerase']\n", + "RAST ['LacI family transcriptional regulator']\n", + "RAST ['sugar ABC transporter substrate-binding protein']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['glycoside hydrolase family 127 protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ROK family protein']\n", + "RAST ['glucose-6-phosphate dehydrogenase']\n", + "RAST ['decarboxylating 6-phosphogluconate dehydrogenase']\n", + "RAST ['glucan 1,4-alpha-glucosidase']\n", + "RAST ['HAMP domain-containing histidine kinase']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['hypothetical protein']\n", + "RAST ['TetR/AcrR family transcriptional regulator C-terminal domain-containing protein']\n", + "RAST ['Tet(A)/Tet(B)/Tet(C) family tetracycline efflux MFS transporter']\n", + "RAST ['amidohydrolase family protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['amidohydrolase family protein']\n", + "RAST ['amidohydrolase family protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['gamma-glutamyltransferase']\n", + "RAST ['amidohydrolase family protein']\n", + "RAST ['Xaa-Pro peptidase family protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['BMP family ABC transporter substrate-binding protein']\n", + "RAST ['amidohydrolase']\n", + "RAST ['glutathione S-transferase family protein']\n", + "RAST ['aromatic ring-hydroxylating dioxygenase subunit alpha']\n", + "RAST ['Rieske (2Fe-2S) protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['MFS transporter']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['FdhF/YdeP family oxidoreductase']\n", + "RAST ['catalase family protein']\n", + "RAST ['DNA helicase RecQ']\n", + "RAST ['L,D-transpeptidase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['AprI/Inh family metalloprotease inhibitor']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['amidohydrolase/deacetylase family metallohydrolase']\n", + "RAST ['RidA family protein']\n", + "RAST ['IclR family transcriptional regulator']\n", + "RAST ['aminotransferase class V-fold PLP-dependent enzyme']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['exodeoxyribonuclease III']\n", + "RAST ['FadR family transcriptional regulator']\n", + "RAST ['PLP-dependent transferase']\n", + "RAST ['sugar ABC transporter substrate-binding protein']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['YiiG family protein']\n", + "RAST ['FAD-dependent monooxygenase']\n", + "RAST ['ThuA domain-containing protein']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['ROK family transcriptional regulator']\n", + "RAST ['extracellular solute-binding protein']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['LuxR C-terminal-related transcriptional regulator']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['aldehyde dehydrogenase iron-sulfur subunit']\n", + "RAST ['xanthine dehydrogenase family protein subunit M']\n", + "RAST ['xanthine dehydrogenase family protein molybdopterin-binding subunit']\n", + "RAST ['XdhC family protein']\n", + "RAST ['nucleotidyltransferase family protein']\n", + "RAST ['NAD(P)/FAD-dependent oxidoreductase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['VOC family protein']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['UDP-glucose/GDP-mannose dehydrogenase family protein']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['NTP transferase domain-containing protein']\n", + "RAST ['right-handed parallel beta-helix repeat-containing protein']\n", + "RAST ['MBOAT family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['alginate O-acetyltransferase AlgF']\n", + "RAST ['SEL1-like repeat protein']\n", + "RAST ['alginate lyase family protein']\n", + "RAST ['pyruvate oxidase']\n", + "RAST ['FUSC family protein']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['XdhC family protein']\n", + "RAST ['2Fe-2S iron-sulfur cluster binding domain-containing protein']\n", + "RAST ['xanthine dehydrogenase family protein subunit M']\n", + "RAST ['xanthine dehydrogenase family protein molybdopterin-binding subunit']\n", + "RAST ['aliphatic sulfonate ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease subunit']\n", + "RAST ['LLM class flavin-dependent oxidoreductase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['metalloregulator ArsR/SmtB family transcription factor']\n", + "RAST ['LLM class flavin-dependent oxidoreductase']\n", + "RAST ['AI-2E family transporter']\n", + "RAST ['BatD family protein']\n", + "RAST ['tetratricopeptide repeat protein']\n", + "RAST ['VWA domain-containing protein']\n", + "RAST ['DUF4381 domain-containing protein']\n", + "RAST ['DUF58 domain-containing protein']\n", + "RAST ['MoxR family ATPase']\n", + "RAST ['HAMP domain-containing histidine kinase']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['DUF2218 domain-containing protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['iron-siderophore ABC transporter substrate-binding protein']\n", + "RAST ['TonB-dependent siderophore receptor']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['sensor histidine kinase']\n", + "RAST ['response regulator']\n", + "RAST ['MFS transporter']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['ferritin-like domain-containing protein']\n", + "RAST ['AAA family ATPase']\n", + "RAST ['polysaccharide export protein']\n", + "RAST ['protein kinase']\n", + "RAST ['type VI secretion system-associated protein TagF']\n", + "RAST ['type VI secretion system membrane subunit TssM']\n", + "RAST ['type VI secretion system protein TssL, long form']\n", + "RAST ['type VI secretion system baseplate subunit TssK']\n", + "RAST ['FHA domain-containing protein']\n", + "RAST ['type VI secretion system baseplate subunit TssG']\n", + "RAST ['type VI secretion system baseplate subunit TssF']\n", + "RAST ['type VI secretion system baseplate subunit TssE']\n", + "RAST ['nitrogen fixation protein']\n", + "RAST ['type VI secretion system contractile sheath large subunit']\n", + "RAST ['type VI secretion system contractile sheath large subunit']\n", + "RAST ['type VI secretion system contractile sheath small subunit']\n", + "RAST ['type VI secretion system protein TssA']\n", + "RAST ['type VI secretion system ATPase TssH']\n", + "RAST ['Hcp family type VI secretion system effector']\n", + "RAST ['hypothetical protein']\n", + "RAST ['type VI secretion system tip protein VgrG']\n", + "RAST ['hypothetical protein']\n", + "RAST ['PAAR domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['arsenic transporter']\n", + "RAST ['cold-shock protein']\n", + "RAST ['Na/Pi cotransporter family protein']\n", + "RAST ['metallophosphoesterase']\n", + "RAST ['dual specificity protein phosphatase family protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['extracellular solute-binding protein']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['inositol monophosphatase']\n", + "RAST ['LacI family DNA-binding transcriptional regulator']\n", + "RAST ['NUDIX hydrolase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['ROK family transcriptional regulator']\n", + "RAST ['extracellular solute-binding protein']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['inositol monophosphatase']\n", + "RAST ['four-carbon acid sugar kinase family protein']\n", + "RAST ['FadR family transcriptional regulator']\n", + "RAST ['iron-containing alcohol dehydrogenase']\n", + "RAST ['4-hydroxythreonine-4-phosphate dehydrogenase PdxA']\n", + "RAST ['exo-alpha-sialidase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['dihydrodipicolinate synthase family protein']\n", + "RAST ['5-dehydro-4-deoxyglucarate dehydratase']\n", + "RAST ['mannonate dehydratase']\n", + "RAST ['NAD(P)-dependent oxidoreductase']\n", + "RAST ['galactose mutarotase']\n", + "RAST ['galactarate dehydratase']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['FadR family transcriptional regulator']\n", + "RAST ['SMP-30/gluconolactonase/LRE family protein']\n", + "RAST ['dihydrodipicolinate synthase family protein']\n", + "RAST ['3,4-dihydroxy-2-butanone-4-phosphate synthase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['sugar ABC transporter ATP-binding protein']\n", + "RAST ['sugar ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['transketolase']\n", + "RAST ['transketolase family protein']\n", + "RAST ['FGGY-family carbohydrate kinase']\n", + "RAST ['sugar-binding transcriptional regulator']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF4263 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['AAA family ATPase']\n", + "RAST ['DndE family protein']\n", + "RAST ['AAA family ATPase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DndE family protein']\n", + "RAST ['AAA family ATPase']\n", + "RAST ['DNA phosphorothioation system sulfurtransferase DndC']\n", + "RAST ['cysteine desulfurase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['type I secretion system permease/ATPase']\n", + "RAST ['HlyD family type I secretion periplasmic adaptor subunit']\n", + "RAST ['LuxR C-terminal-related transcriptional regulator']\n", + "RAST ['amidase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['M20 family metallopeptidase']\n", + "RAST ['acetyl-CoA carboxylase biotin carboxyl carrier protein subunit']\n", + "RAST ['acetyl-CoA carboxylase biotin carboxylase subunit']\n", + "RAST ['hypothetical protein']\n", + "RAST ['5-oxoprolinase subunit PxpB']\n", + "RAST ['biotin-dependent carboxyltransferase family protein']\n", + "RAST ['LamB/YcsF family protein']\n", + "RAST ['pyridoxal phosphate-dependent aminotransferase']\n", + "RAST ['nitrogen assimilation transcriptional regulator NAC']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['amino acid ABC transporter permease']\n", + "RAST ['amino acid ABC transporter permease']\n", + "RAST ['amino acid ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['gluconokinase']\n", + "RAST ['2-hydroxyacid dehydrogenase']\n", + "RAST ['L-idonate 5-dehydrogenase']\n", + "RAST ['magnesium/cobalt transporter CorA']\n", + "RAST ['hypothetical protein']\n", + "RAST ['transposase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['acyltransferase']\n", + "RAST ['D-TA family PLP-dependent enzyme']\n", + "RAST ['carboxymuconolactone decarboxylase family protein']\n", + "RAST ['MerR family transcriptional regulator']\n", + "RAST ['NAD(P)-dependent alcohol dehydrogenase']\n", + "RAST ['pyrimidine utilization protein D']\n", + "RAST ['pyrimidine utilization protein C']\n", + "RAST ['pyrimidine utilization protein B']\n", + "RAST ['pyrimidine utilization protein A']\n", + "RAST ['malto-oligosyltrehalose trehalohydrolase']\n", + "RAST ['malto-oligosyltrehalose synthase']\n", + "RAST ['MFS transporter']\n", + "RAST ['hypothetical protein']\n", + "RAST ['(S)-ureidoglycine aminohydrolase']\n", + "RAST ['DoxX family protein']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['DNA translocase FtsK']\n", + "RAST ['dihydrodipicolinate synthase family protein']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['sugar ABC transporter substrate-binding protein']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['sugar kinase']\n", + "RAST ['sodium-translocating pyrophosphatase']\n", + "RAST ['MFS transporter']\n", + "RAST ['transcription antitermination factor NusB']\n", + "RAST ['6,7-dimethyl-8-ribityllumazine synthase']\n", + "RAST ['LysE family translocator']\n", + "RAST ['riboflavin synthase']\n", + "RAST ['bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD']\n", + "RAST ['transcriptional regulator NrdR']\n", + "RAST ['serine hydroxymethyltransferase']\n", + "RAST ['murein L,D-transpeptidase']\n", + "RAST ['winged helix DNA-binding protein']\n", + "RAST ['DUF6163 family protein']\n", + "RAST ['porphobilinogen synthase']\n", + "RAST ['RDD family protein']\n", + "RAST ['arginyltransferase']\n", + "RAST ['AbrB/MazE/SpoVT family DNA-binding domain-containing protein']\n", + "RAST ['type II toxin-antitoxin system death-on-curing family toxin']\n", + "RAST ['DNA topoisomerase IV subunit A']\n", + "RAST ['hypothetical protein']\n", + "RAST ['pyridoxal kinase PdxY']\n", + "RAST ['carbonic anhydrase']\n", + "RAST ['lytic transglycosylase domain-containing protein']\n", + "RAST ['aspartate-semialdehyde dehydrogenase']\n", + "RAST ['YifB family Mg chelatase-like AAA ATPase']\n", + "RAST ['cupin domain-containing protein']\n", + "RAST ['penicillin-binding protein 1C']\n", + "RAST ['alpha-2-macroglobulin family protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['outer membrane beta-barrel protein']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['divalent metal cation transporter']\n", + "RAST ['LamB/YcsF family protein']\n", + "RAST ['putative hydro-lyase']\n", + "RAST ['5-oxoprolinase/urea amidolyase family protein']\n", + "RAST ['biotin/lipoyl-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['GGDEF domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Ku protein']\n", + "RAST ['DNA ligase D']\n", + "RAST ['Ku protein']\n", + "RAST ['phosphoribosyltransferase']\n", + "RAST ['M20 family metallopeptidase']\n", + "RAST ['NmrA family NAD(P)-binding protein']\n", + "RAST ['helix-turn-helix transcriptional regulator']\n", + "RAST ['adenine deaminase']\n", + "RAST ['nucleoside hydrolase']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['polyamine ABC transporter substrate-binding protein']\n", + "RAST ['LacI family transcriptional regulator']\n", + "RAST ['flavin reductase family protein']\n", + "RAST ['Rrf2 family transcriptional regulator']\n", + "RAST ['tetratricopeptide repeat protein']\n", + "RAST ['endoglucanase']\n", + "RAST ['cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB']\n", + "RAST ['UDP-forming cellulose synthase catalytic subunit']\n", + "RAST ['cellulose biosynthesis protein BcsN']\n", + "RAST ['AGE family epimerase/isomerase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['aminotransferase class V-fold PLP-dependent enzyme']\n", + "RAST ['hypothetical protein']\n", + "RAST ['FGGY-family carbohydrate kinase']\n", + "RAST ['HAD family hydrolase']\n", + "RAST ['mannitol dehydrogenase family protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['sugar ABC transporter substrate-binding protein']\n", + "RAST ['sugar-binding transcriptional regulator']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['amidase']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['dipeptidase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['acyl-CoA dehydrogenase']\n", + "RAST ['NAD-dependent succinate-semialdehyde dehydrogenase']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['sensor histidine kinase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['sugar ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['SMP-30/gluconolactonase/LRE family protein']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['glutathione synthase']\n", + "RAST ['biliverdin-producing heme oxygenase']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DNA-binding protein']\n", + "RAST [\"pyridoxamine 5'-phosphate oxidase family protein\"]\n", + "RAST ['cytochrome P450']\n", + "RAST ['replication initiation protein RepC']\n", + "RAST ['plasmid partitioning protein RepB']\n", + "RAST ['plasmid partitioning protein RepA']\n", + "RAST ['FAD/NAD(P)-binding protein']\n", + "RAST ['aspartate aminotransferase family protein']\n", + "RAST ['cupin domain-containing protein']\n", + "RAST ['flavodoxin family protein']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['rubrerythrin family protein']\n", + "RAST ['Lrp/AsnC family transcriptional regulator']\n", + "RAST ['DMT family transporter']\n", + "RAST ['transglutaminase-like cysteine peptidase']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['translation initiation factor IF-3']\n", + "RAST ['50S ribosomal protein L35']\n", + "RAST ['50S ribosomal protein L20']\n", + "RAST ['hypothetical protein']\n", + "RAST ['phenylalanine--tRNA ligase subunit alpha']\n", + "RAST ['phenylalanine--tRNA ligase subunit beta']\n", + "RAST ['tripartite tricarboxylate transporter substrate binding protein']\n", + "RAST ['HAMP domain-containing methyl-accepting chemotaxis protein']\n", + "RAST ['flavin reductase']\n", + "RAST ['mandelate racemase/muconate lactonizing enzyme family protein']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['Ldh family oxidoreductase']\n", + "RAST ['FadR family transcriptional regulator']\n", + "RAST ['sialic acid TRAP transporter substrate-binding protein SiaP']\n", + "RAST ['TRAP transporter small permease']\n", + "RAST ['TRAP transporter large permease']\n", + "RAST ['L-idonate 5-dehydrogenase']\n", + "RAST ['mannonate dehydratase']\n", + "RAST ['mannitol dehydrogenase family protein']\n", + "RAST ['MHS family MFS transporter']\n", + "RAST ['aminopeptidase']\n", + "RAST ['Cys-tRNA(Pro) deacylase']\n", + "RAST ['ArsC family reductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['N-acyl homoserine lactonase family protein']\n", + "RAST ['iron-containing alcohol dehydrogenase']\n", + "RAST ['NAD-dependent succinate-semialdehyde dehydrogenase']\n", + "RAST ['IclR family transcriptional regulator']\n", + "RAST [\"pyridoxamine 5'-phosphate oxidase family protein\"]\n", + "RAST ['DUF1206 domain-containing protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['nuclear transport factor 2 family protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['glutamine-hydrolyzing GMP synthase']\n", + "RAST [\"5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase\"]\n", + "RAST ['PaaI family thioesterase']\n", + "RAST ['NAD(P)/FAD-dependent oxidoreductase']\n", + "RAST ['2,3-butanediol dehydrogenase']\n", + "RAST ['sigma-54-dependent Fis family transcriptional regulator']\n", + "RAST ['tryptophan-rich sensory protein']\n", + "RAST ['DUF1513 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['thiol oxidoreductase']\n", + "RAST ['imelysin family protein']\n", + "RAST ['RsmB/NOP family class I SAM-dependent RNA methyltransferase']\n", + "RAST ['septal ring lytic transglycosylase RlpA family protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['tRNA epoxyqueuosine(34) reductase QueG']\n", + "RAST ['glutathione S-transferase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['complex I NDUFA9 subunit family protein']\n", + "RAST ['DUF1330 domain-containing protein']\n", + "RAST [\"orotidine-5'-phosphate decarboxylase\"]\n", + "RAST ['phosphoglycerate mutase family protein']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['DNA polymerase III subunit beta']\n", + "RAST [\"16S rRNA (cytidine(1402)-2'-O)-methyltransferase\"]\n", + "RAST ['YraN family protein']\n", + "RAST ['sugar O-acetyltransferase']\n", + "RAST ['extracellular solute-binding protein']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter permease UgpE']\n", + "RAST ['sn-glycerol-3-phosphate import ATP-binding protein UgpC']\n", + "RAST ['XRE family transcriptional regulator']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Trm112 family protein']\n", + "RAST ['LON peptidase substrate-binding domain-containing protein']\n", + "RAST ['thioredoxin']\n", + "RAST ['prolyl-tRNA synthetase associated domain-containing protein']\n", + "RAST ['D-alanyl-D-alanine carboxypeptidase']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['alpha-glucosidase/alpha-galactosidase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['alpha-glucosidase/alpha-galactosidase']\n", + "RAST ['class 1b ribonucleoside-diphosphate reductase subunit beta']\n", + "RAST ['class 1b ribonucleoside-diphosphate reductase subunit alpha']\n", + "RAST ['class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI']\n", + "RAST ['glutaredoxin-like protein NrdH']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['iron ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['DMT family transporter']\n", + "RAST ['sigma-70 family RNA polymerase sigma factor']\n", + "RAST ['cysteine hydrolase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF4142 domain-containing protein']\n", + "RAST ['Crp/Fnr family transcriptional regulator']\n", + "RAST ['Crp/Fnr family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Crp/Fnr family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['cytochrome c oxidase subunit I']\n", + "RAST ['cytochrome c oxidase subunit II']\n", + "RAST ['DUF2231 domain-containing protein']\n", + "RAST ['CopD family protein']\n", + "RAST ['cytochrome c oxidase assembly protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['inositol 2-dehydrogenase']\n", + "RAST ['5-deoxy-glucuronate isomerase']\n", + "RAST ['myo-inosose-2 dehydratase']\n", + "RAST ['3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)']\n", + "RAST ['5-dehydro-2-deoxygluconokinase']\n", + "RAST ['MurR/RpiR family transcriptional regulator']\n", + "RAST ['acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha']\n", + "RAST ['acyl-CoA carboxylase subunit beta']\n", + "RAST ['EamA family transporter']\n", + "RAST ['dicarboxylate/amino acid:cation symporter']\n", + "RAST ['sensor histidine kinase']\n", + "RAST ['sigma-54 dependent transcriptional regulator']\n", + "RAST ['BA14K family protein']\n", + "RAST ['aspartate/glutamate racemase family protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['PotD/PotF family extracellular solute-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['D-amino acid dehydrogenase']\n", + "RAST ['alanine racemase']\n", + "RAST ['Lrp/AsnC family transcriptional regulator']\n", + "RAST ['bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase']\n", + "RAST ['thiamine phosphate synthase']\n", + "RAST ['hydroxyethylthiazole kinase']\n", + "RAST ['CHASE3 domain-containing protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['telomere resolvase']\n", + "RAST ['Xaa-Pro peptidase family protein']\n", + "RAST ['virulence factor family protein']\n", + "RAST ['bifunctional lysylphosphatidylglycerol flippase/synthetase MprF']\n", + "RAST ['dipeptidase']\n", + "RAST ['serine hydrolase']\n", + "RAST ['MFS transporter']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['D-amino-acid transaminase']\n", + "RAST ['LLM class flavin-dependent oxidoreductase']\n", + "RAST ['MmgE/PrpD family protein']\n", + "RAST ['amino acid ABC transporter ATP-binding protein']\n", + "RAST ['amino acid ABC transporter permease']\n", + "RAST ['amino acid ABC transporter permease']\n", + "RAST ['transporter substrate-binding domain-containing protein']\n", + "RAST ['heme-degrading domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['PRC-barrel domain-containing protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['acetylornithine deacetylase']\n", + "RAST ['glyoxylate/hydroxypyruvate reductase A']\n", + "RAST ['cupin domain-containing protein']\n", + "RAST ['aldehyde dehydrogenase family protein']\n", + "RAST ['tartrate dehydrogenase']\n", + "RAST ['NAD-dependent succinate-semialdehyde dehydrogenase']\n", + "RAST ['FAD-binding oxidoreductase']\n", + "RAST ['haloacid dehalogenase type II']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['aspartate aminotransferase family protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['Lrp/AsnC family transcriptional regulator']\n", + "RAST ['FAD-binding oxidoreductase']\n", + "RAST ['FMNH2-dependent alkanesulfonate monooxygenase']\n", + "RAST ['FMN reductase']\n", + "RAST ['FAD/NAD(P)-binding protein']\n", + "RAST ['FMN reductase']\n", + "RAST ['dimethyl sulfone monooxygenase SfnG']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['branched-chain amino acid ABC transporter permease']\n", + "RAST ['branched-chain amino acid ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['SfnB family sulfur acquisition oxidoreductase']\n", + "RAST ['(2Fe-2S)-binding protein']\n", + "RAST ['RhtX/FptX family siderophore transporter']\n", + "RAST ['diaminobutyrate--2-oxoglutarate transaminase']\n", + "RAST ['aspartate aminotransferase family protein']\n", + "RAST ['Rhizobactin siderophore biosynthesis protein RhbC']\n", + "RAST ['acetyltransferase']\n", + "RAST ['putative histamine N-monooxygenase']\n", + "RAST ['IucA/IucC family siderophore biosynthesis protein']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['TonB-dependent receptor']\n", + "RAST ['acetyltransferase']\n", + "RAST ['type II toxin-antitoxin system ParD family antitoxin']\n", + "RAST ['type II toxin-antitoxin system RelE/ParE family toxin']\n", + "RAST ['transposase']\n", + "RAST ['phosphoribosylaminoimidazolesuccinocarboxamide synthase']\n", + "RAST ['TetR family transcriptional regulator']\n", + "RAST ['efflux RND transporter periplasmic adaptor subunit']\n", + "RAST ['efflux RND transporter permease subunit']\n", + "RAST ['efflux transporter outer membrane subunit']\n", + "RAST ['elongation factor P']\n", + "RAST ['EF-P lysine aminoacylase GenX']\n", + "RAST ['lysine-2,3-aminomutase-like protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Lrp/AsnC ligand binding domain-containing protein']\n", + "RAST ['FAD-binding oxidoreductase']\n", + "RAST ['penicillin-binding protein 2']\n", + "RAST ['hypothetical protein']\n", + "RAST ['molybdate ABC transporter substrate-binding protein']\n", + "RAST ['molybdate ABC transporter permease subunit']\n", + "RAST ['molybdenum ABC transporter ATP-binding protein']\n", + "RAST ['winged helix-turn-helix domain-containing protein']\n", + "RAST ['P1 family peptidase']\n", + "RAST ['thiazole synthase']\n", + "RAST ['sulfur carrier protein ThiS']\n", + "RAST ['glycine oxidase ThiO']\n", + "RAST ['phosphomethylpyrimidine synthase ThiC']\n", + "RAST ['acyl carrier protein']\n", + "RAST ['acyl-CoA/acyl-ACP dehydrogenase']\n", + "RAST ['amino acid--[acyl-carrier-protein] ligase']\n", + "RAST ['DUF1839 family protein']\n", + "RAST ['glycoside hydrolase family 2 protein']\n", + "RAST ['ABC transporter ATP-binding protein/permease']\n", + "RAST ['cyclic nucleotide-binding domain-containing protein']\n", + "RAST ['MBL fold metallo-hydrolase']\n", + "RAST ['adenylate/guanylate cyclase domain-containing protein']\n", + "RAST ['M20 family metallopeptidase']\n", + "RAST ['amino acid ABC transporter ATP-binding protein']\n", + "RAST ['amino acid ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['PLP-dependent aminotransferase family protein']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['nucleotide sugar dehydrogenase']\n", + "RAST ['glycosyltransferase family 4 protein']\n", + "RAST ['polysaccharide deacetylase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['mannosyltransferase']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['glycosyltransferase family protein']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['glycosyl transferase']\n", + "RAST ['FAD-dependent oxidoreductase']\n", + "RAST ['phosphatase PAP2 family protein']\n", + "RAST ['1-deoxy-D-xylulose-5-phosphate reductoisomerase']\n", + "RAST ['metal-binding protein ZinT']\n", + "RAST ['5-aminolevulinate synthase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['autotransporter assembly complex protein TamA']\n", + "RAST ['translocation/assembly module TamB']\n", + "RAST ['PAS domain-containing methyl-accepting chemotaxis protein']\n", + "RAST ['chemotaxis protein CheW']\n", + "RAST ['PAS domain-containing methyl-accepting chemotaxis protein']\n", + "RAST ['F0F1 ATP synthase subunit epsilon']\n", + "RAST ['F0F1 ATP synthase subunit beta']\n", + "RAST ['F0F1 ATP synthase subunit gamma']\n", + "RAST ['F0F1 ATP synthase subunit alpha']\n", + "RAST ['F0F1 ATP synthase subunit delta']\n", + "RAST ['hypothetical protein']\n", + "RAST [\"primosomal protein N'\"]\n", + "RAST ['tyrosine recombinase XerC']\n", + "RAST ['TraB/GumN family protein']\n", + "RAST ['DUF2867 domain-containing protein']\n", + "RAST ['BCCT family transporter']\n", + "RAST ['cytochrome b/b6 domain-containing protein']\n", + "RAST ['dihydrolipoyl dehydrogenase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['LysE family translocator']\n", + "RAST ['MAPEG family protein']\n", + "RAST ['2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase']\n", + "RAST ['2-oxoglutarate dehydrogenase E1 component']\n", + "RAST ['succinate--CoA ligase subunit alpha']\n", + "RAST ['ADP-forming succinate--CoA ligase subunit beta']\n", + "RAST ['malate dehydrogenase']\n", + "RAST ['cell division protein ZapE']\n", + "RAST ['AprI/Inh family metalloprotease inhibitor']\n", + "RAST ['succinate dehydrogenase iron-sulfur subunit']\n", + "RAST ['succinate dehydrogenase flavoprotein subunit']\n", + "RAST ['succinate dehydrogenase, hydrophobic membrane anchor protein']\n", + "RAST ['succinate dehydrogenase, cytochrome b556 subunit']\n", + "RAST ['hypothetical protein']\n", + "RAST ['methyltransferase']\n", + "RAST ['EVE domain-containing protein']\n", + "RAST ['YciI family protein']\n", + "RAST ['NAD(P)-dependent glycerol-3-phosphate dehydrogenase']\n", + "RAST ['tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD']\n", + "RAST ['hydroxymethylbilane synthase']\n", + "RAST ['uroporphyrinogen-III synthase']\n", + "RAST ['COG4223 family protein']\n", + "RAST ['heme biosynthesis protein HemY']\n", + "RAST ['TerB family tellurite resistance protein']\n", + "RAST ['YggT family protein']\n", + "RAST ['DUF167 domain-containing protein']\n", + "RAST ['inorganic diphosphatase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['translational GTPase TypA']\n", + "RAST ['M3 family metallopeptidase']\n", + "RAST ['MarR family transcriptional regulator']\n", + "RAST ['argininosuccinate synthase']\n", + "RAST ['SDR family NAD(P)-dependent oxidoreductase']\n", + "RAST ['LysE family translocator']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['M48 family metallopeptidase']\n", + "RAST ['23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN']\n", + "RAST ['invasion associated locus B family protein']\n", + "RAST ['DUF1232 domain-containing protein']\n", + "RAST ['4a-hydroxytetrahydrobiopterin dehydratase']\n", + "RAST [\"RNA 2',3'-cyclic phosphodiesterase\"]\n", + "RAST ['arylesterase']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['Bax inhibitor-1/YccA family protein']\n", + "RAST ['DUF2794 domain-containing protein']\n", + "RAST ['thioredoxin family protein']\n", + "RAST ['aconitate hydratase AcnA']\n", + "RAST ['heme ABC exporter ATP-binding protein CcmA']\n", + "RAST ['heme exporter protein CcmB']\n", + "RAST ['heme ABC transporter permease']\n", + "RAST ['heme exporter protein CcmD']\n", + "RAST ['DsbE family thiol:disulfide interchange protein']\n", + "RAST ['GGDEF domain-containing protein']\n", + "RAST ['DUF2585 domain-containing protein']\n", + "RAST ['septation protein A']\n", + "RAST ['signal recognition particle-docking protein FtsY']\n", + "RAST ['tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB']\n", + "RAST ['diaminopimelate epimerase']\n", + "RAST ['3-isopropylmalate dehydratase large subunit']\n", + "RAST ['MFS transporter']\n", + "RAST ['amino acid ABC transporter permease']\n", + "RAST ['transporter substrate-binding domain-containing protein']\n", + "RAST ['50S ribosomal protein L19']\n", + "RAST ['sulfite exporter TauE/SafE family protein']\n", + "RAST ['tRNA (guanosine(37)-N1)-methyltransferase TrmD']\n", + "RAST ['ribosome maturation factor RimM']\n", + "RAST ['30S ribosomal protein S16']\n", + "RAST ['chorismate mutase']\n", + "RAST ['signal recognition particle protein']\n", + "RAST ['MBL fold metallo-hydrolase']\n", + "RAST ['M48 family metalloprotease']\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['thiamine/thiamine pyrophosphate ABC transporter permease ThiP']\n", + "RAST ['thiamine ABC transporter substrate binding subunit']\n", + "RAST ['VOC family protein']\n", + "RAST ['ABC-F family ATP-binding cassette domain-containing protein']\n", + "RAST ['thiamine diphosphokinase']\n", + "RAST ['homoserine O-succinyltransferase']\n", + "RAST ['galactose mutarotase']\n", + "RAST ['monofunctional biosynthetic peptidoglycan transglycosylase']\n", + "RAST ['polyprenyl synthetase family protein']\n", + "RAST ['OmpA family protein']\n", + "RAST ['flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase']\n", + "RAST ['MFS transporter']\n", + "RAST ['DeoR/GlpR family DNA-binding transcription regulator']\n", + "RAST ['pyruvate carboxylase']\n", + "RAST ['LuxR family transcriptional regulator']\n", + "RAST ['glucan ABC transporter ATP-binding protein/ permease']\n", + "RAST ['DUF1013 domain-containing protein']\n", + "RAST ['acetate--CoA ligase']\n", + "RAST ['TRAP transporter substrate-binding protein']\n", + "RAST ['TRAP transporter large permease subunit']\n", + "RAST ['TRAP transporter small permease']\n", + "RAST ['fumarylacetoacetate hydrolase family protein']\n", + "RAST ['FadR family transcriptional regulator']\n", + "RAST ['FAD-binding oxidoreductase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['NAD(P)-dependent oxidoreductase']\n", + "RAST ['aldehyde dehydrogenase family protein']\n", + "RAST ['threonine/serine dehydratase']\n", + "RAST ['cupin domain-containing protein']\n", + "RAST ['NAD(P)/FAD-dependent oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['cobalt-precorrin-5B (C(1))-methyltransferase']\n", + "RAST ['cobyrinate a,c-diamide synthase']\n", + "RAST ['glutathione-dependent disulfide-bond oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['cytochrome-c peroxidase']\n", + "RAST ['MFS transporter']\n", + "RAST ['transcriptional regulator']\n", + "RAST ['3-isopropylmalate dehydrogenase']\n", + "RAST ['3-isopropylmalate dehydratase small subunit']\n", + "RAST ['hypothetical protein']\n", + "RAST ['CoA ester lyase']\n", + "RAST ['DUF1737 domain-containing protein']\n", + "RAST ['metallopeptidase family protein']\n", + "RAST ['50S ribosomal protein L21']\n", + "RAST ['50S ribosomal protein L27']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['GTPase ObgE']\n", + "RAST ['glutamate 5-kinase']\n", + "RAST ['glutamate-5-semialdehyde dehydrogenase']\n", + "RAST ['nicotinate-nucleotide adenylyltransferase']\n", + "RAST ['ribosome silencing factor']\n", + "RAST ['23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH']\n", + "RAST ['murein hydrolase activator EnvC']\n", + "RAST ['S41 family peptidase']\n", + "RAST ['divergent polysaccharide deacetylase family protein']\n", + "RAST ['RNA pyrophosphohydrolase']\n", + "RAST ['bacterioferritin']\n", + "RAST ['(2Fe-2S)-binding protein']\n", + "RAST ['acetoacetyl-CoA reductase']\n", + "RAST ['acetyl-CoA C-acetyltransferase']\n", + "RAST ['polyhydroxyalkanoate synthesis repressor PhaR']\n", + "RAST ['MFS transporter']\n", + "RAST ['NAD-glutamate dehydrogenase']\n", + "RAST ['CarD family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['cyclic nucleotide-binding domain-containing protein']\n", + "RAST ['exodeoxyribonuclease III']\n", + "RAST ['outer membrane lipoprotein carrier protein LolA']\n", + "RAST ['DNA translocase FtsK']\n", + "RAST ['ammonium transporter']\n", + "RAST ['P-II family nitrogen regulator']\n", + "RAST ['acyl-CoA thioesterase II']\n", + "RAST ['ubiquinone biosynthesis hydroxylase']\n", + "RAST ['helicase']\n", + "RAST ['RNA-binding S4 domain-containing protein']\n", + "RAST ['ferredoxin family protein']\n", + "RAST ['DNA polymerase III subunit delta']\n", + "RAST ['hypothetical protein']\n", + "RAST ['leucine--tRNA ligase']\n", + "RAST ['YggS family pyridoxal phosphate-dependent enzyme']\n", + "RAST ['protein ndvB']\n", + "RAST ['M20 family metallopeptidase']\n", + "RAST ['precorrin-4 C(11)-methyltransferase']\n", + "RAST ['cobalamin biosynthesis protein']\n", + "RAST ['bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase']\n", + "RAST ['cobalt-precorrin-6A reductase']\n", + "RAST ['precorrin-3B C(17)-methyltransferase']\n", + "RAST ['precorrin-2 C(20)-methyltransferase']\n", + "RAST ['precorrin-8X methylmutase']\n", + "RAST ['precorrin-3B synthase']\n", + "RAST ['cobaltochelatase subunit CobN']\n", + "RAST ['cobalamin biosynthesis protein CobW']\n", + "RAST ['DUF1636 family protein']\n", + "RAST ['cob(I)yrinic acid a,c-diamide adenosyltransferase']\n", + "RAST ['cobyric acid synthase']\n", + "RAST ['adenosylcobinamide-phosphate synthase CbiB']\n", + "RAST ['threonine-phosphate decarboxylase CobD']\n", + "RAST ['L-fuconate dehydratase']\n", + "RAST ['zinc-binding alcohol dehydrogenase family protein']\n", + "RAST ['amidohydrolase']\n", + "RAST ['aldo/keto reductase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['sugar ABC transporter ATP-binding protein']\n", + "RAST ['FadR family transcriptional regulator']\n", + "RAST ['altronate dehydratase family protein']\n", + "RAST ['bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase']\n", + "RAST ['heparinase II/III family protein']\n", + "RAST ['methyltransferase domain-containing protein']\n", + "RAST ['zinc metalloprotease HtpX']\n", + "RAST ['DUF1674 domain-containing protein']\n", + "RAST ['ParB/RepB/Spo0J family partition protein']\n", + "RAST ['ParA family protein']\n", + "RAST ['16S rRNA (guanine(527)-N(7))-methyltransferase RsmG']\n", + "RAST ['tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG']\n", + "RAST ['tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE']\n", + "RAST ['transcription termination factor Rho']\n", + "RAST ['protoporphyrinogen oxidase HemJ']\n", + "RAST ['uroporphyrinogen decarboxylase']\n", + "RAST ['kinase/pyrophosphorylase']\n", + "RAST ['Maf-like protein']\n", + "RAST ['shikimate dehydrogenase']\n", + "RAST ['dephospho-CoA kinase']\n", + "RAST ['DNA polymerase III subunit epsilon']\n", + "RAST ['protein-export chaperone SecB']\n", + "RAST ['membrane protein FxsA']\n", + "RAST ['Tim44/TimA family putative adaptor protein']\n", + "RAST ['murein transglycosylase A']\n", + "RAST ['Smr/MutS family protein']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['DNA topoisomerase (ATP-hydrolyzing) subunit B']\n", + "RAST ['nitroreductase family protein']\n", + "RAST ['fumarylacetoacetate hydrolase family protein']\n", + "RAST ['polyhydroxyalkanoate depolymerase']\n", + "RAST ['M48 family metallopeptidase']\n", + "RAST ['phosphoribosylanthranilate isomerase']\n", + "RAST ['tryptophan synthase subunit beta']\n", + "RAST ['tryptophan synthase subunit alpha']\n", + "RAST ['acetyl-CoA carboxylase, carboxyltransferase subunit beta']\n", + "RAST ['bifunctional folylpolyglutamate synthase/dihydrofolate synthase']\n", + "RAST ['thioredoxin']\n", + "RAST ['double-strand break repair helicase AddA']\n", + "RAST ['double-strand break repair protein AddB']\n", + "RAST ['nucleotidyltransferase family protein']\n", + "RAST ['tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE']\n", + "RAST ['PAS domain-containing sensor histidine kinase']\n", + "RAST ['adenosylhomocysteinase']\n", + "RAST ['HPr family phosphocarrier protein']\n", + "RAST ['PTS sugar transporter subunit IIA']\n", + "RAST ['serine kinase']\n", + "RAST ['sensor histidine kinase']\n", + "RAST ['two-component system response regulator ChvI']\n", + "RAST ['phosphoenolpyruvate carboxykinase']\n", + "RAST ['aminoacyl-tRNA hydrolase']\n", + "RAST ['type I pantothenate kinase']\n", + "RAST ['phosphoribosyl-ATP diphosphatase']\n", + "RAST ['imidazole glycerol phosphate synthase subunit HisF']\n", + "RAST ['1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase']\n", + "RAST ['imidazole glycerol phosphate synthase subunit HisH']\n", + "RAST ['DUF2628 domain-containing protein']\n", + "RAST ['imidazoleglycerol-phosphate dehydratase HisB']\n", + "RAST ['ATP-dependent protease subunit HslV']\n", + "RAST ['ATP-dependent protease ATPase subunit HslU']\n", + "RAST ['DUF1402 family protein']\n", + "RAST ['malate synthase G']\n", + "RAST ['L,D-transpeptidase']\n", + "RAST ['MmcB family DNA repair protein']\n", + "RAST ['ActR/PrrA/RegA family redox response regulator transcription factor']\n", + "RAST ['ActS/PrrB/RegB family redox-sensitive histidine kinase']\n", + "RAST ['ATP-dependent helicase HrpB']\n", + "RAST ['ornithine cyclodeaminase family protein']\n", + "RAST ['acyl-CoA/acyl-ACP dehydrogenase']\n", + "RAST ['LLM class flavin-dependent oxidoreductase']\n", + "RAST ['LLM class flavin-dependent oxidoreductase']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['molybdopterin guanine dinucleotide-containing S/N-oxide reductase']\n", + "RAST ['FAD-binding protein']\n", + "RAST ['DsbA family protein']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['ABC transporter permease subunit']\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['taurine ABC transporter substrate-binding protein']\n", + "RAST ['LLM class flavin-dependent oxidoreductase']\n", + "RAST ['aliphatic sulfonate ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['FMNH2-dependent alkanesulfonate monooxygenase']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['ABC transporter permease subunit']\n", + "RAST ['aliphatic sulfonate ABC transporter substrate-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF1857 family protein']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['dienelactone hydrolase']\n", + "RAST ['alpha-hydroxy-acid oxidizing protein']\n", + "RAST ['tripartite tricarboxylate transporter permease']\n", + "RAST ['tripartite tricarboxylate transporter TctB family protein']\n", + "RAST ['tripartite tricarboxylate transporter substrate binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['amidohydrolase family protein']\n", + "RAST ['SMP-30/gluconolactonase/LRE family protein']\n", + "RAST ['IclR family transcriptional regulator']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['hydroxyacid dehydrogenase']\n", + "RAST ['RraA family protein']\n", + "RAST ['PAS domain-containing hybrid sensor histidine kinase/response regulator']\n", + "RAST ['circadian clock protein KaiC']\n", + "RAST ['hypothetical protein']\n", + "RAST ['EAL domain-containing protein']\n", + "RAST ['DUF1488 domain-containing protein']\n", + "RAST ['DUF1109 domain-containing protein']\n", + "RAST ['sigma-70 family RNA polymerase sigma factor']\n", + "RAST ['pentapeptide MXKDX repeat protein']\n", + "RAST ['cytochrome b/b6 domain-containing protein']\n", + "RAST ['molybdopterin-binding protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['sigma-70 family RNA polymerase sigma factor']\n", + "RAST ['anti-sigma factor']\n", + "RAST ['DoxX family protein']\n", + "RAST ['fasciclin domain-containing protein']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['substrate-binding domain-containing protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['metallophosphoesterase']\n", + "RAST ['HD-GYP domain-containing protein']\n", + "RAST ['chemotaxis protein CheW']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['PAS domain-containing protein']\n", + "RAST ['SDR family NAD(P)-dependent oxidoreductase']\n", + "RAST ['sarcosine oxidase subunit gamma']\n", + "RAST ['sarcosine oxidase subunit alpha']\n", + "RAST ['sarcosine oxidase subunit delta']\n", + "RAST ['sarcosine oxidase subunit beta family protein']\n", + "RAST ['GlxA family transcriptional regulator']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['glutamine amidotransferase family protein']\n", + "RAST ['GXGXG domain-containing protein']\n", + "RAST ['FMN-binding glutamate synthase family protein']\n", + "RAST ['type III glutamate--ammonia ligase']\n", + "RAST ['formyltetrahydrofolate deformylase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF4838 domain-containing protein']\n", + "RAST ['lipopolysaccharide biosynthesis protein']\n", + "RAST ['polysaccharide pyruvyl transferase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['polysaccharide pyruvyl transferase family protein']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['glycosyltransferase family 2 protein']\n", + "RAST ['glycosyltransferase family 4 protein']\n", + "RAST ['endonuclease']\n", + "RAST ['glucose-1-phosphate thymidylyltransferase RfbA']\n", + "RAST ['dTDP-4-dehydrorhamnose reductase']\n", + "RAST ['dTDP-glucose 4,6-dehydratase']\n", + "RAST ['dTDP-4-dehydrorhamnose 3,5-epimerase']\n", + "RAST ['O-antigen ligase family protein']\n", + "RAST ['polysaccharide export protein']\n", + "RAST ['polysaccharide biosynthesis tyrosine autokinase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['sugar transferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['glucose-1-phosphate cytidylyltransferase']\n", + "RAST ['CDP-glucose 4,6-dehydratase']\n", + "RAST ['dTDP-4-dehydrorhamnose 3,5-epimerase family protein']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['acyltransferase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['cephalosporin hydroxylase family protein']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['disulfide bond formation protein B']\n", + "RAST ['HNH endonuclease']\n", + "RAST ['DNA-3-methyladenine glycosylase']\n", + "RAST ['tRNA glutamyl-Q(34) synthetase GluQRS']\n", + "RAST ['YihY/virulence factor BrkB family protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['twin transmembrane helix small protein']\n", + "RAST ['cob(I)yrinic acid a,c-diamide adenosyltransferase']\n", + "RAST ['rhomboid family intramembrane serine protease']\n", + "RAST ['electron transfer flavoprotein subunit beta/FixA family protein']\n", + "RAST ['electron transfer flavoprotein subunit alpha/FixB family protein']\n", + "RAST ['3-hydroxybutyryl-CoA dehydrogenase']\n", + "RAST ['TlpA family protein disulfide reductase']\n", + "RAST ['argininosuccinate lyase']\n", + "RAST ['lipoprotein']\n", + "RAST ['diaminopimelate decarboxylase']\n", + "RAST ['TIGR02302 family protein']\n", + "RAST ['glutathione-dependent formaldehyde dehydrogenase']\n", + "RAST ['substrate-binding domain-containing protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ThuA domain-containing protein']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['oligosaccharide flippase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['oligosaccharide repeat unit polymerase']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['glycosyltransferase family 4 protein']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['alpha/beta fold hydrolase']\n", + "RAST ['preprotein translocase subunit SecA']\n", + "RAST ['peptidylprolyl isomerase']\n", + "RAST ['bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['8-oxo-dGTP diphosphatase MutT']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Flp family type IVb pilin']\n", + "RAST ['methyltransferase domain-containing protein']\n", + "RAST ['ComF family protein']\n", + "RAST ['glutaredoxin 3']\n", + "RAST ['carbon-nitrogen hydrolase family protein']\n", + "RAST ['DUF1178 family protein']\n", + "RAST ['bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG']\n", + "RAST ['SH3 domain-containing protein']\n", + "RAST ['DEAD/DEAH box helicase']\n", + "RAST ['aspartate kinase']\n", + "RAST ['phosphoenolpyruvate--protein phosphotransferase']\n", + "RAST ['peptide chain release factor 1']\n", + "RAST ['peptide chain release factor N(5)-glutamine methyltransferase']\n", + "RAST ['DUF4167 domain-containing protein']\n", + "RAST ['methylmalonyl-CoA mutase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['DMT family transporter']\n", + "RAST ['glutathione synthase']\n", + "RAST ['flavohemoglobin expression-modulating QEGLA motif protein']\n", + "RAST ['N-formylglutamate amidohydrolase']\n", + "RAST ['sulfurtransferase TusA family protein']\n", + "RAST ['L,D-transpeptidase family protein']\n", + "RAST ['cardiolipin synthase']\n", + "RAST ['endonuclease/exonuclease/phosphatase family protein']\n", + "RAST ['DUF992 domain-containing protein']\n", + "RAST ['cytochrome c family protein']\n", + "RAST ['recombination regulator RecX']\n", + "RAST ['adenylate/guanylate cyclase domain-containing protein']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['sugar ABC transporter substrate-binding protein']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['aldo/keto reductase']\n", + "RAST ['LacI family DNA-binding transcriptional regulator']\n", + "RAST ['Gfo/Idh/MocA family oxidoreductase']\n", + "RAST ['sugar phosphate isomerase/epimerase']\n", + "RAST ['sugar ABC transporter substrate-binding protein']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['TIGR02588 family protein']\n", + "RAST ['TIGR02587 family membrane protein']\n", + "RAST ['septum site-determining protein MinC']\n", + "RAST ['septum site-determining protein MinD']\n", + "RAST ['cell division topological specificity factor MinE']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['dihydrodipicolinate synthase family protein']\n", + "RAST ['methyl-accepting chemotaxis protein']\n", + "RAST ['DUF1612 and helix-turn-helix domain-containing protein']\n", + "RAST ['HAMP domain-containing protein']\n", + "RAST ['response regulator transcription factor']\n", + "RAST ['phosphoethanolamine--lipid A transferase']\n", + "RAST ['DNA topoisomerase IB']\n", + "RAST ['PQQ-dependent sugar dehydrogenase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['RNA pseudouridine synthase']\n", + "RAST ['IMPACT family protein']\n", + "RAST ['TIGR03862 family flavoprotein']\n", + "RAST ['PAS domain-containing protein']\n", + "RAST ['glyoxylate/hydroxypyruvate reductase A']\n", + "RAST ['P-loop NTPase']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['glycosyltransferase family 2 protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['glycoside hydrolase family 16 protein']\n", + "RAST ['acyltransferase']\n", + "RAST ['lipopolysaccharide biosynthesis protein']\n", + "RAST ['glycosyltransferase family 2 protein']\n", + "RAST ['polysaccharide pyruvyl transferase family protein']\n", + "RAST ['glycosyltransferase']\n", + "RAST ['exopolysaccharide production repressor protein']\n", + "RAST ['DUF6074 family protein']\n", + "RAST ['LacI family transcriptional regulator']\n", + "RAST ['sugar ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['substrate-binding domain-containing protein']\n", + "RAST ['FAD-binding oxidoreductase']\n", + "RAST ['glycosyltransferase family 39 protein']\n", + "RAST ['NADP-dependent malic enzyme']\n", + "RAST ['glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase']\n", + "RAST ['mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase']\n", + "RAST ['ParA family protein']\n", + "RAST ['chemotaxis response regulator protein-glutamate methylesterase']\n", + "RAST ['protein-glutamate O-methyltransferase']\n", + "RAST ['chemotaxis protein CheW']\n", + "RAST ['glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase']\n", + "RAST ['asparaginase domain-containing protein']\n", + "RAST ['amino acid permease']\n", + "RAST ['aspartate ammonia-lyase']\n", + "RAST ['FadR family transcriptional regulator']\n", + "RAST ['ANTAR domain-containing response regulator']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['nitrate ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['nitrite reductase large subunit NirB']\n", + "RAST ['nitrite reductase small subunit NirD']\n", + "RAST ['nitrate reductase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['nucleoside 2-deoxyribosyltransferase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ribonuclease D']\n", + "RAST ['hypothetical protein']\n", + "RAST ['30S ribosomal protein S1']\n", + "RAST ['(d)CMP kinase']\n", + "RAST ['TIGR02300 family protein']\n", + "RAST ['toll/interleukin-1 receptor domain-containing protein']\n", + "RAST ['MarR family transcriptional regulator']\n", + "RAST ['cyclase family protein']\n", + "RAST ['NAD(P)/FAD-dependent oxidoreductase']\n", + "RAST ['MarR family transcriptional regulator']\n", + "RAST ['D-lactate dehydrogenase']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['iron-containing alcohol dehydrogenase']\n", + "RAST ['MFS transporter']\n", + "RAST ['cupin']\n", + "RAST ['NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta']\n", + "RAST ['Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha']\n", + "RAST ['MFS transporter']\n", + "RAST ['indolepyruvate oxidoreductase subunit beta family protein']\n", + "RAST ['indolepyruvate ferredoxin oxidoreductase subunit alpha']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['flavin reductase family protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['winged helix DNA-binding protein']\n", + "RAST ['LLM class flavin-dependent oxidoreductase']\n", + "RAST ['bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['acyl-CoA thioesterase']\n", + "RAST ['RidA family protein']\n", + "RAST ['cupin domain-containing protein']\n", + "RAST ['fumarylacetoacetate hydrolase family protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['HAD-IA family hydrolase']\n", + "RAST ['sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC']\n", + "RAST ['extracellular solute-binding protein']\n", + "RAST ['sugar ABC transporter permease']\n", + "RAST ['carbohydrate ABC transporter permease']\n", + "RAST ['MurR/RpiR family transcriptional regulator']\n", + "RAST ['UDP-N-acetylglucosamine 1-carboxyvinyltransferase']\n", + "RAST ['N-acetylglucosamine kinase']\n", + "RAST ['N-acetylmuramic acid 6-phosphate etherase']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['serine hydrolase']\n", + "RAST ['anhydro-N-acetylmuramic acid kinase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['exodeoxyribonuclease VII large subunit']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['isochorismatase family protein']\n", + "RAST ['GlxA family transcriptional regulator']\n", + "RAST ['aldo/keto reductase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['PAS domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['flavin reductase family protein']\n", + "RAST ['Xaa-Pro peptidase family protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['extracellular solute-binding protein']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['amino acid ABC transporter permease']\n", + "RAST ['sugar phosphate isomerase/epimerase']\n", + "RAST ['GntR family transcriptional regulator']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['ATP-dependent Zn protease']\n", + "RAST ['AAA family ATPase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['HNH endonuclease']\n", + "RAST ['type I restriction endonuclease subunit R']\n", + "RAST ['hypothetical protein']\n", + "RAST ['DUF3800 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['restriction endonuclease subunit S']\n", + "RAST ['type I restriction-modification system subunit M']\n", + "RAST ['DEAD/DEAH box helicase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['OmpA family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['MFS transporter']\n", + "RAST ['DUF2322 family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['HAMP domain-containing methyl-accepting chemotaxis protein']\n", + "RAST ['glycoside hydrolase family 15 protein']\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['ABC transporter permease subunit']\n", + "RAST ['ABC transporter permease subunit']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['histidine utilization repressor']\n", + "RAST ['histidine ammonia-lyase']\n", + "RAST ['PhnD/SsuA/transferrin family substrate-binding protein']\n", + "RAST ['fatty acid desaturase']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['transporter substrate-binding domain-containing protein']\n", + "RAST ['amino acid ABC transporter permease']\n", + "RAST ['amino acid ABC transporter permease']\n", + "RAST ['amino acid ABC transporter ATP-binding protein']\n", + "RAST ['agmatinase']\n", + "RAST ['glycine betaine/L-proline ABC transporter ATP-binding protein']\n", + "RAST ['proline/glycine betaine ABC transporter permease']\n", + "RAST ['CoA transferase']\n", + "RAST ['GMC family oxidoreductase N-terminal domain-containing protein']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['glycosyltransferase family 2 protein']\n", + "RAST ['transglutaminase-like cysteine peptidase']\n", + "RAST ['metallophosphoesterase']\n", + "RAST ['acetyl-CoA carboxylase carboxyltransferase subunit alpha']\n", + "RAST ['site-specific tyrosine recombinase XerD']\n", + "RAST ['hypothetical protein']\n", + "RAST ['shikimate kinase']\n", + "RAST ['3-dehydroquinate synthase']\n", + "RAST ['BolA family transcriptional regulator']\n", + "RAST ['J domain-containing protein']\n", + "RAST ['cobaltochelatase subunit CobS']\n", + "RAST ['cobaltochelatase subunit CobT']\n", + "RAST ['esterase-like activity of phytase family protein']\n", + "RAST ['1-acyl-sn-glycerol-3-phosphate acyltransferase']\n", + "RAST ['YdcF family protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['cell division ATP-binding protein FtsE']\n", + "RAST ['DUF3426 domain-containing protein']\n", + "RAST ['hypoxanthine phosphoribosyltransferase']\n", + "RAST ['ATP-dependent chaperone ClpB']\n", + "RAST ['response regulator']\n", + "RAST ['truncated hemoglobin']\n", + "RAST ['TRAP transporter substrate-binding protein']\n", + "RAST ['catalase/peroxidase HPI']\n", + "RAST ['amino acid ABC transporter substrate-binding protein']\n", + "RAST ['amino acid ABC transporter permease']\n", + "RAST ['amino acid ABC transporter ATP-binding protein']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['efflux RND transporter periplasmic adaptor subunit']\n", + "RAST ['multidrug efflux RND transporter permease subunit']\n", + "RAST ['gamma-glutamylcyclotransferase']\n", + "RAST ['DUF2125 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['prephenate/arogenate dehydrogenase family protein']\n", + "RAST ['histidinol-phosphate transaminase']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['hydroxyacylglutathione hydrolase']\n", + "RAST ['cupin domain-containing protein']\n", + "RAST ['DUF3108 domain-containing protein']\n", + "RAST ['50S ribosomal protein L28']\n", + "RAST ['queuosine precursor transporter']\n", + "RAST ['FUSC family protein']\n", + "RAST ['aspartate--tRNA ligase']\n", + "RAST ['ribonuclease D']\n", + "RAST ['adenylate/guanylate cyclase domain-containing protein']\n", + "RAST ['esterase-like activity of phytase family protein']\n", + "RAST ['exopolyphosphatase']\n", + "RAST ['RNA degradosome polyphosphate kinase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['AI-2E family transporter']\n", + "RAST ['phosphoribosylformylglycinamidine cyclo-ligase']\n", + "RAST ['phosphoribosylglycinamide formyltransferase']\n", + "RAST ['phytanoyl-CoA dioxygenase family protein']\n", + "RAST ['AraC family transcriptional regulator']\n", + "RAST ['NUDIX domain-containing protein']\n", + "RAST ['molybdopterin oxidoreductase family protein']\n", + "RAST ['23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ']\n", + "RAST ['lysylphosphatidylglycerol synthase domain-containing protein']\n", + "RAST ['ribonuclease']\n", + "RAST ['glutathione S-transferase family protein']\n", + "RAST ['porin family protein']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['excinuclease ABC subunit UvrC']\n", + "RAST ['CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase']\n", + "RAST ['molybdopterin converting factor subunit 1']\n", + "RAST ['molybdenum cofactor biosynthesis protein MoaE']\n", + "RAST ['cadmium-translocating P-type ATPase']\n", + "RAST ['DMT family transporter']\n", + "RAST ['ornithine cyclodeaminase']\n", + "RAST ['arginase']\n", + "RAST ['Lrp/AsnC family transcriptional regulator']\n", + "RAST ['NADP-dependent oxidoreductase']\n", + "RAST ['SDR family NAD(P)-dependent oxidoreductase']\n", + "RAST ['alkene reductase']\n", + "RAST ['SDR family oxidoreductase']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['efflux RND transporter permease subunit']\n", + "RAST ['efflux RND transporter periplasmic adaptor subunit']\n", + "RAST ['TetR/AcrR family transcriptional regulator']\n", + "RAST ['acyltransferase family protein']\n", + "RAST ['formaldehyde dehydrogenase, glutathione-independent']\n", + "RAST ['Fe(3+) ABC transporter substrate-binding protein']\n", + "RAST ['iron-responsive transcriptional regulator RirA']\n", + "RAST ['AbrB family transcriptional regulator']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter substrate-binding protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['histidine utilization repressor']\n", + "RAST ['tonB-system energizer ExbB']\n", + "RAST ['TonB system transport protein ExbD']\n", + "RAST ['TonB family protein']\n", + "RAST ['phosphonate metabolism transcriptional regulator PhnF']\n", + "RAST ['phosphonate C-P lyase system protein PhnG']\n", + "RAST ['phosphonate C-P lyase system protein PhnH']\n", + "RAST ['carbon-phosphorus lyase complex subunit PhnI']\n", + "RAST ['alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ']\n", + "RAST ['phosphonate C-P lyase system protein PhnK']\n", + "RAST ['phosphonate C-P lyase system protein PhnL']\n", + "RAST ['acetyltransferase']\n", + "RAST ['phosphonate ABC transporter ATP-binding protein']\n", + "RAST ['phosphonate ABC transporter substrate-binding protein']\n", + "RAST ['phosphonate ABC transporter, permease protein PhnE']\n", + "RAST ['phosphonate ABC transporter, permease protein PhnE']\n", + "RAST ['DUF1045 domain-containing protein']\n", + "RAST ['alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase']\n", + "RAST ['phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['antibiotic biosynthesis monooxygenase']\n", + "RAST ['CoA-acylating methylmalonate-semialdehyde dehydrogenase']\n", + "RAST ['HutD family protein']\n", + "RAST ['urocanate hydratase']\n", + "RAST ['N-formylglutamate deformylase']\n", + "RAST ['histidine ammonia-lyase']\n", + "RAST ['imidazolonepropionase']\n", + "RAST ['formimidoylglutamate deiminase']\n", + "RAST ['DMT family transporter']\n", + "RAST ['DUF475 domain-containing protein']\n", + "RAST ['MarR family winged helix-turn-helix transcriptional regulator']\n", + "RAST ['C40 family peptidase']\n", + "RAST ['hypothetical protein']\n", + "RAST ['nicotinate phosphoribosyltransferase']\n", + "RAST ['leucyl aminopeptidase family protein']\n", + "RAST ['tetratricopeptide repeat protein']\n", + "RAST ['type II secretion system F family protein']\n", + "RAST ['type II secretion system F family protein']\n", + "RAST ['CpaF family protein']\n", + "RAST ['CpaE family protein']\n", + "RAST ['CpaD family pilus assembly protein']\n", + "RAST ['type II and III secretion system protein family protein']\n", + "RAST ['Flp pilus assembly protein CpaB']\n", + "RAST ['prepilin peptidase']\n", + "RAST ['Flp family type IVb pilin']\n", + "RAST ['pilus assembly protein N-terminal domain-containing protein']\n", + "RAST ['SelT/SelW/SelH family protein']\n", + "RAST ['DoxX family protein']\n", + "RAST ['PAS domain-containing protein']\n", + "RAST ['response regulator']\n", + "RAST ['PAS domain-containing protein']\n", + "RAST ['molecular chaperone DnaK']\n", + "RAST ['molecular chaperone DnaJ']\n", + "RAST ['DUF924 family protein']\n", + "RAST ['SlyX family protein']\n", + "RAST ['tripartite tricarboxylate transporter permease']\n", + "RAST ['tripartite tricarboxylate transporter TctB family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['sigma-54 dependent transcriptional regulator']\n", + "RAST ['sensor histidine kinase']\n", + "RAST ['50S ribosomal protein L32']\n", + "RAST ['DUF1868 domain-containing protein']\n", + "RAST ['DNA polymerase I']\n", + "RAST ['hypothetical protein']\n", + "RAST ['MarR family transcriptional regulator']\n", + "RAST ['M20/M25/M40 family metallo-hydrolase']\n", + "RAST ['cold-shock protein']\n", + "RAST ['YbaK/EbsC family protein']\n", + "RAST ['penicillin-binding protein']\n", + "RAST ['glycoside hydrolase family 25 protein']\n", + "RAST ['DMT family transporter']\n", + "RAST ['PLP-dependent aminotransferase family protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['Rrf2 family transcriptional regulator']\n", + "RAST ['NAD(P)/FAD-dependent oxidoreductase']\n", + "RAST ['translation elongation factor 4']\n", + "RAST ['carbon-nitrogen hydrolase family protein']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['nuclear transport factor 2 family protein']\n", + "RAST ['MmcQ/YjbR family DNA-binding protein']\n", + "RAST ['bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC']\n", + "RAST ['peptide chain release factor 3']\n", + "RAST ['dUTP diphosphatase']\n", + "RAST ['LysE family translocator']\n", + "RAST ['cysteine synthase A']\n", + "RAST ['thymidine phosphorylase']\n", + "RAST ['deoxyribose-phosphate aldolase']\n", + "RAST ['purine-nucleoside phosphorylase']\n", + "RAST ['cytidine deaminase']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['BMP family ABC transporter substrate-binding protein']\n", + "RAST ['peptide-methionine (S)-S-oxide reductase MsrA']\n", + "RAST ['hypothetical protein']\n", + "RAST ['efflux RND transporter periplasmic adaptor subunit']\n", + "RAST ['efflux RND transporter permease subunit']\n", + "RAST ['cytochrome c family protein']\n", + "RAST ['3-deoxy-manno-octulosonate cytidylyltransferase']\n", + "RAST ['prephenate dehydratase']\n", + "RAST ['NAD(+) diphosphatase']\n", + "RAST ['HIT family protein']\n", + "RAST ['DNA polymerase III subunit gamma/tau']\n", + "RAST ['YbaB/EbfC family nucleoid-associated protein']\n", + "RAST ['MOSC domain-containing protein']\n", + "RAST ['recombination mediator RecR']\n", + "RAST ['lytic murein transglycosylase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['MFS transporter']\n", + "RAST ['ribosome maturation factor RimP']\n", + "RAST ['transcription termination factor NusA']\n", + "RAST ['RNA-binding protein']\n", + "RAST ['translation initiation factor IF-2']\n", + "RAST ['30S ribosome-binding factor RbfA']\n", + "RAST ['tRNA pseudouridine(55) synthase TruB']\n", + "RAST ['LysR family transcriptional regulator']\n", + "RAST ['30S ribosomal protein S15']\n", + "RAST ['polyribonucleotide nucleotidyltransferase']\n", + "RAST ['class I SAM-dependent methyltransferase']\n", + "RAST ['AEC family transporter']\n", + "RAST ['adenosine kinase']\n", + "RAST ['SH3 domain-containing protein']\n", + "RAST ['D-glycerate dehydrogenase']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['molybdopterin-synthase adenylyltransferase MoeB']\n", + "RAST ['DNA replication/repair protein RecF']\n", + "RAST ['alpha/beta hydrolase']\n", + "RAST ['nucleoside triphosphate hydrolase']\n", + "RAST ['ATP-binding cassette domain-containing protein']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['sugar ABC transporter substrate-binding protein']\n", + "RAST ['ROK family transcriptional regulator']\n", + "RAST ['Ldh family oxidoreductase']\n", + "RAST ['2,3-bisphosphoglycerate-dependent phosphoglycerate mutase']\n", + "RAST ['4-hydroxy-tetrahydrodipicolinate reductase']\n", + "RAST ['ABC transporter ATP-binding protein/permease']\n", + "RAST ['glucokinase']\n", + "RAST ['methylglyoxal synthase']\n", + "RAST ['penicillin-insensitive murein endopeptidase']\n", + "RAST ['extracellular solute-binding protein']\n", + "RAST ['microcin C ABC transporter permease YejB']\n", + "RAST ['ABC transporter permease']\n", + "RAST ['ABC transporter ATP-binding protein']\n", + "RAST ['FAD-binding oxidoreductase']\n", + "RAST ['glutamine synthetase family protein']\n", + "RAST ['FAD-binding oxidoreductase']\n", + "RAST ['gluconokinase']\n", + "RAST ['VOC family protein']\n", + "RAST ['DUF1275 domain-containing protein']\n", + "RAST ['hypothetical protein']\n", + "RAST ['trimeric intracellular cation channel family protein']\n", + "RAST ['Fur family transcriptional regulator Irr']\n", + "RAST ['3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA']\n", + "RAST ['beta-ketoacyl-ACP synthase I']\n", + "RAST ['enoyl-ACP reductase FabI']\n", + "RAST ['pilus assembly protein']\n", + "RAST ['pilus assembly protein']\n", + "RAST ['MFS transporter']\n", + "RAST ['ubiquinol oxidase subunit II']\n", + "RAST ['cytochrome o ubiquinol oxidase subunit I']\n", + "RAST ['cytochrome o ubiquinol oxidase subunit III']\n", + "RAST ['cytochrome o ubiquinol oxidase subunit IV']\n", + "RAST ['SURF1 family protein']\n", + "RAST ['phosphopentomutase']\n", + "RAST ['adenosine deaminase']\n", + "RAST ['uracil phosphoribosyltransferase']\n", + "RAST ['chromosomal replication initiator protein DnaA']\n", + "RAST ['30S ribosomal protein S20']\n", + "RAST ['enoyl-CoA hydratase']\n", + "RAST ['bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase']\n", + "RAST ['bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE']\n", + "RAST ['2-polyprenylphenol 6-hydroxylase']\n", + "RAST ['radical SAM family heme chaperone HemW']\n", + "RAST ['RdgB/HAM1 family non-canonical purine NTP pyrophosphatase']\n", + "RAST ['ribonuclease PH']\n", + "RAST ['heat-inducible transcriptional repressor HrcA']\n", + "RAST ['nucleotide exchange factor GrpE']\n", + "RAST ['PTS IIA-like nitrogen regulatory protein PtsN']\n", + "RAST ['ribosome-associated translation inhibitor RaiA']\n", + "RAST ['RNA polymerase factor sigma-54']\n", + "RAST ['LPS export ABC transporter ATP-binding protein']\n", + "RAST ['LptA/OstA family protein']\n", + "RAST ['LPS export ABC transporter periplasmic protein LptC']\n", + "RAST ['signal peptide peptidase SppA']\n", + "RAST ['integration host factor subunit beta']\n", + "RAST ['LapA family protein']\n", + "RAST ['class I SAM-dependent rRNA methyltransferase']\n", + "RAST ['RNA methyltransferase']\n", + "RAST ['signal peptidase II']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['DNA mismatch repair protein MutS']\n", + "RAST ['[protein-PII] uridylyltransferase']\n", + "RAST ['murein biosynthesis integral membrane protein MurJ']\n", + "RAST ['VOC family protein']\n", + "RAST ['tryptophan--tRNA ligase']\n", + "RAST ['universal stress protein']\n", + "RAST ['NifU family protein']\n", + "RAST ['tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB']\n", + "RAST ['GNAT family N-acetyltransferase']\n", + "RAST ['transcriptional repressor']\n", + "RAST ['1-acyl-sn-glycerol-3-phosphate acyltransferase']\n", + "RAST ['tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB']\n", + "RAST ['PhoH family protein']\n", + "RAST ['rRNA maturation RNase YbeY']\n", + "RAST ['hemolysin family protein']\n", + "RAST ['apolipoprotein N-acyltransferase']\n", + "RAST ['helix-turn-helix domain-containing protein']\n", + "RAST ['methionine adenosyltransferase']\n", + "RAST ['tRNA (guanosine(46)-N7)-methyltransferase TrmB']\n", + "RAST ['DeoR/GlpR family DNA-binding transcription regulator']\n", + "RAST ['NUDIX domain-containing protein']\n", + "RAST ['ribokinase']\n", + "RAST ['DNA recombination protein RmuC']\n", + "RAST ['peptide deformylase']\n", + "RAST ['methionyl-tRNA formyltransferase']\n", + "RAST ['tRNA pseudouridine(38-40) synthase TruA']\n", + "RAST ['hypothetical protein']\n", + "RAST ['succinyl-diaminopimelate desuccinylase']\n", + "RAST ['2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase']\n", + "RAST ['LOG family protein']\n", + "RAST ['nucleoside hydrolase']\n" + ] + } + ], + "source": [ + "for feature in GCF_001423105_genome.features:\n", + " # print(dir(feature))\n", + " for key, val in feature.ontology_terms.items():\n", + " print(key, val)\n", + " if key == 'SSO': print(val)\n", + " \n", + "for feature in GCF_001421235_genome.features:\n", + " # print(dir(feature))\n", + " for key, val in feature.ontology_terms.items():\n", + " print(key, val)\n", + " if key == 'SSO': print(val)\n", + " " + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "60517806-8f0a-4bd4-a65b-22c47fd222c6", + "metadata": { + "scrolled": true, + "tags": [] + }, + "outputs": [ + { + "data": { + "text/html": [ + "
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MRO metabolitesCIP metabolitesMIP model1 metabolitesMIP model2 metabolitesBSS model1 metabolitesBSS model2 metabolitesfs_features
0{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00184_e...[cpd00060, cpd00104, cpd00001, cpd00053, cpd00...[cpd00013, cpd00035, cpd00041, cpd00069, cpd00...[cpd00118, cpd00132]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
1{EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e...[cpd00122, cpd00129, cpd00218, cpd00104, cpd00...[cpd00013, cpd00129, cpd00161, cpd00023, cpd00...[cpd00067, cpd00132]{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd0...
2{EX_cpd00009_e0, EX_cpd00156_e0, EX_cpd00218_e...[cpd00104, cpd00001, cpd00053, cpd00122, cpd03...[cpd00161, cpd00023, cpd00013, cpd00054, cpd00...[cpd00067]{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd0...
3{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00039_e...[cpd00104, cpd00001, cpd00053, cpd00122, cpd00...[cpd00119, cpd00129, cpd00161, cpd00023, cpd00...[]{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...[{cpd00683, cpd00295, cpd10516, cpd15688, cpd0...
4{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e...[cpd00104, cpd00001, cpd00053, cpd00122, cpd00...[cpd00013, cpd00009, cpd00161, cpd00023, cpd00...[cpd00053, cpd00118]{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...[{cpd00683, cpd00295, cpd10516, cpd15688, cpd0...
5{EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00039_e...[cpd00122, cpd01171, cpd00100, cpd00104, cpd00...[cpd00060, cpd00119, cpd00013, cpd00129, cpd00...[]{cpd00683, cpd00295, cpd27744, cpd10516, cpd03...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...[{cpd00683, cpd00295, cpd27744, cpd10516, cpd0...
6{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e...[cpd00060, cpd00104, cpd00001, cpd00053, cpd00...[cpd00322, cpd00060, cpd00066, cpd00069, cpd00...[cpd00118]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
7{EX_cpd00156_e0, EX_cpd00009_e0, EX_cpd00218_e...[cpd00118, cpd00104, cpd00001, cpd00053, cpd00...[cpd00013][]{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...[{cpd10516, cpd00295, cpd00297, cpd00125, cpd0...
8{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e...[cpd00122, cpd00129, cpd00100, cpd00104, cpd00...[cpd00013, cpd00107, cpd00119, cpd00129, cpd00...[cpd00132, cpd00053]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
9{EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e...[cpd00082, cpd00129, cpd00218, cpd00104, cpd00...[cpd00041, cpd00129, cpd00161, cpd00023, cpd00...[cpd00067]{cpd00683, cpd00295, cpd10516, cpd27744, cpd15...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd1...
10{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e...[cpd00104, cpd00001, cpd00161, cpd00029, cpd00...[cpd00067, cpd00971, cpd00129][cpd00067]{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd0...
11{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00122, cpd00129, cpd00116, cpd00218, cpd00...[cpd00129][cpd10515]{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd0...
12{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00122, cpd00147, cpd00129, cpd00218, cpd00...[None][None]{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd00683, cpd00295, cpd10516, cpd15688, cpd0...
13{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00104, cpd00001, cpd00122, cpd00161, cpd00...[None][None]{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd00683, cpd00295, cpd10516, cpd15688, cpd0...
14{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00129, cpd00116, cpd01171, cpd00100, cpd00...[cpd00054][]{cpd00683, cpd00295, cpd27744, cpd10516, cpd03...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd00683, cpd00295, cpd27744, cpd10516, cpd0...
15{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00104, cpd00001, cpd00122, cpd00161, cpd00...[None][None]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
16{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00184_e...[cpd00118, cpd00104, cpd00001, cpd00161, cpd00...[cpd00013][cpd00129, cpd00041, cpd00035]{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd10516, cpd00295, cpd00297, cpd00125, cpd0...
17{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00104, cpd00001, cpd00122, cpd00161, cpd00...[None][None]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
18{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e...[cpd00082, cpd00129, cpd00116, cpd00218, cpd00...[cpd00129, cpd00054][cpd00035, cpd10515, cpd00067, cpd00161]{cpd00683, cpd00295, cpd10516, cpd27744, cpd15...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd1...
19{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e...[cpd00122, cpd00001, cpd03279, cpd01914, cpd00...[cpd00161, cpd00067][cpd00067]{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd0...
20{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e...[cpd00053, cpd00001, cpd00122, cpd00147, cpd01...[cpd00067][cpd00023, cpd00041]{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd10516, cpd15688, cpd0...
21{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e...[cpd00122, cpd00001, cpd01914, cpd00129, cpd00...[cpd10515, cpd00013][cpd00041, cpd00033, cpd00067]{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd10516, cpd15688, cpd0...
22{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e...[cpd00118, cpd00001, cpd01914, cpd00129, cpd00...[cpd10515, cpd00054, cpd00161, cpd00067][cpd00067, cpd00041]{cpd00683, cpd00295, cpd27744, cpd10516, cpd03...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd27744, cpd10516, cpd0...
23{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e...[cpd00122, cpd00001, cpd01914, cpd00129, cpd00...[cpd00023, cpd10515, cpd00067][cpd00041, cpd00067]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
24{EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e...[cpd00118, cpd00104, cpd00001, cpd01914, cpd00...[cpd00067][cpd00067, cpd00033, cpd00129]{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd10516, cpd00295, cpd00297, cpd00125, cpd0...
25{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e...[cpd00122, cpd00001, cpd01914, cpd00129, cpd00...[cpd00161][cpd00129, cpd00067]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
26{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e...[cpd00082, cpd00129, cpd00116, cpd00130, cpd00...[cpd00161, cpd00054, cpd00067, cpd00035, cpd00...[cpd00129, cpd00067, cpd00971, cpd00023]{cpd00683, cpd00295, cpd10516, cpd27744, cpd15...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd1...
27{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00122, cpd00001, cpd00053, cpd00147, cpd03...[cpd00322, cpd00033][cpd00184, cpd00013, cpd00041, cpd00023, cpd00...{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd10516, cpd15688, cpd0...
28{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00122, cpd00001, cpd03279, cpd00129, cpd00...[cpd00013, cpd00322, cpd00033, cpd10515][cpd00129, cpd00035, cpd00041]{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd10516, cpd15688, cpd0...
29{EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e...[cpd00118, cpd00122, cpd00001, cpd03279, cpd00...[cpd00161, cpd00033, cpd00013, cpd10515][cpd00054, cpd00041]{cpd00683, cpd00295, cpd27744, cpd10516, cpd03...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd27744, cpd10516, cpd0...
30{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00122, cpd00001, cpd03279, cpd00129, cpd00...[cpd10515, cpd00033][cpd00041]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
31{EX_cpd00009_e0, EX_cpd00156_e0, EX_cpd00218_e...[cpd00118, cpd00122, cpd00001, cpd00104, cpd03...[][cpd00161, cpd00129, cpd00035, cpd00013]{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd10516, cpd00295, cpd00297, cpd00125, cpd0...
32{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00122, cpd00001, cpd03279, cpd00129, cpd00...[cpd00033, cpd10515, cpd00013][cpd00161, cpd00041, cpd00054]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
33{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e...[cpd00122, cpd00082, cpd00129, cpd00116, cpd00...[cpd00023, cpd00054][cpd00067, cpd00035, cpd00246, cpd00033]{cpd00683, cpd00295, cpd10516, cpd27744, cpd15...{cpd00683, cpd00295, cpd10516, cpd27744, cpd03...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd1...
34{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00053, cpd00001, cpd00122, cpd00147, cpd00...[cpd00035, cpd00322][cpd00129, cpd00013]{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...[{cpd00683, cpd00295, cpd10516, cpd15688, cpd0...
35{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00122, cpd00147, cpd00129, cpd00116, cpd01...[cpd00161][cpd00322, cpd00129]{cpd00683, cpd00295, cpd27744, cpd10516, cpd03...{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...[{cpd00683, cpd00295, cpd27744, cpd10516, cpd0...
36{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00053, cpd00001, cpd00122, cpd00147, cpd00...[cpd00129][cpd00013, cpd00322]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
37{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00039_e...[cpd00118, cpd00053, cpd00001, cpd00122, cpd00...[cpd00013][cpd00033, cpd00322, cpd00161, cpd00129]{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...[{cpd10516, cpd00295, cpd00297, cpd00125, cpd0...
38{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00053, cpd00001, cpd00122, cpd00147, cpd00...[cpd00322][cpd00013, cpd00161, cpd00129]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
39{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e...[cpd00122, cpd00147, cpd00082, cpd00129, cpd00...[cpd00119, cpd00129][cpd00054, cpd00067, cpd00092]{cpd00683, cpd00295, cpd10516, cpd27744, cpd15...{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd1...
40{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00118, cpd00122, cpd00001, cpd00129, cpd00...[cpd00129][cpd00041, cpd00013]{cpd00683, cpd00295, cpd27744, cpd10516, cpd03...{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...[{cpd00683, cpd00295, cpd27744, cpd10516, cpd0...
41{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00122, cpd00001, cpd00129, cpd00035, cpd00...[cpd00013, cpd00035, cpd00322, cpd00129][]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
42{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e...[cpd00118, cpd00122, cpd00001, cpd00104, cpd00...[cpd10515][cpd00013, cpd00129, cpd00041, cpd00033]{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...[{cpd10516, cpd00295, cpd00297, cpd00125, cpd0...
43{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00122, cpd00001, cpd00024, cpd00129, cpd00...[cpd00013][cpd00129, cpd00035, cpd00041, cpd10515]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
44{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e...[cpd00122, cpd00082, cpd00129, cpd00116, cpd00...[cpd00054, cpd00092, cpd00129][cpd10515, cpd00119, cpd00067, cpd00033]{cpd00683, cpd00295, cpd10516, cpd27744, cpd15...{cpd00683, cpd00295, cpd10516, cpd15688, cpd02...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd1...
45{EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e...[cpd00118, cpd00314, cpd00001, cpd00122, cpd00...[cpd00013, cpd00322, cpd00161, cpd00129][cpd00054]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd27744, cpd10516, cpd03...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
46{EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00039_e...[cpd00118, cpd00104, cpd00001, cpd00029, cpd00...[][cpd00161, cpd00129, cpd00054, cpd00033, cpd00...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...{cpd00683, cpd00295, cpd27744, cpd10516, cpd03...[{cpd10516, cpd00295, cpd00297, cpd00125, cpd0...
47{EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e...[cpd00118, cpd00122, cpd00001, cpd00024, cpd00...[cpd00013, cpd00129, cpd00322][cpd00161, cpd00054]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd27744, cpd10516, cpd03...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
48{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e...[cpd00082, cpd00129, cpd00116, cpd01171, cpd00...[cpd00161, cpd00092, cpd00039, cpd00035][cpd10515, cpd00013, cpd00033, cpd00051, cpd00...{cpd00683, cpd00295, cpd10516, cpd27744, cpd15...{cpd00683, cpd00295, cpd27744, cpd10516, cpd03...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd1...
49{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00067_e...[cpd00118, cpd00122, cpd00001, cpd00104, cpd00...[][cpd00035, cpd00033, cpd00013, cpd00084, cpd00...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd10516, cpd00295, cpd00297, cpd00125, cpd0...
50{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e...[cpd00122, cpd00001, cpd00024, cpd00129, cpd00...[cpd00013][cpd00129, cpd00322]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
51{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e...[cpd00122, cpd00082, cpd00129, cpd00116, cpd00...[cpd00161][cpd00067, cpd00033, cpd00119]{cpd00683, cpd00295, cpd10516, cpd27744, cpd15...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd1...
52{EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00067_e...[cpd00118, cpd00104, cpd00001, cpd00122, cpd00...[cpd00033, cpd00322, cpd00129, cpd00035, cpd00...[]{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...[{cpd00683, cpd00295, cpd10516, cpd03205, cpd1...
53{EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e...[cpd00082, cpd00129, cpd00116, cpd00104, cpd00...[cpd00129, cpd00041, cpd00035, cpd00054, cpd00...[cpd00067]{cpd00683, cpd00295, cpd10516, cpd27744, cpd15...{cpd10516, cpd00295, cpd00297, cpd00125, cpd00...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd1...
54{EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e...[cpd00122, cpd00082, cpd00129, cpd00116, cpd00...[cpd00129][cpd00039, cpd00067, cpd00322]{cpd00683, cpd00295, cpd10516, cpd27744, cpd15...{cpd00683, cpd00295, cpd10516, cpd03205, cpd15...[{cpd00683, cpd00295, cpd10516, cpd27744, cpd1...
\n", + "
" + ], + "text/plain": [ + " MRO metabolites \\\n", + "0 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00184_e... \n", + "1 {EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e... \n", + "2 {EX_cpd00009_e0, EX_cpd00156_e0, EX_cpd00218_e... \n", + "3 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00039_e... \n", + "4 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e... \n", + "5 {EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00039_e... \n", + "6 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e... \n", + "7 {EX_cpd00156_e0, EX_cpd00009_e0, EX_cpd00218_e... \n", + "8 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e... \n", + "9 {EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e... \n", + "10 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e... \n", + "11 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "12 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "13 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "14 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "15 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "16 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00184_e... \n", + "17 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "18 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e... \n", + "19 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e... \n", + "20 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e... \n", + "21 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e... \n", + "22 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e... \n", + "23 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e... \n", + "24 {EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e... \n", + "25 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e... \n", + "26 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e... \n", + "27 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "28 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "29 {EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e... \n", + "30 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "31 {EX_cpd00009_e0, EX_cpd00156_e0, EX_cpd00218_e... \n", + "32 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "33 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e... \n", + "34 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "35 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "36 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "37 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00039_e... \n", + "38 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "39 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e... \n", + "40 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "41 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "42 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e... \n", + "43 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "44 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e... \n", + "45 {EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e... \n", + "46 {EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00039_e... \n", + "47 {EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e... \n", + "48 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e... \n", + "49 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00067_e... \n", + "50 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e... \n", + "51 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e... \n", + "52 {EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00067_e... \n", + "53 {EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e... \n", + "54 {EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e... \n", + "\n", + " CIP metabolites \\\n", + "0 [cpd00060, cpd00104, cpd00001, cpd00053, cpd00... \n", + "1 [cpd00122, cpd00129, cpd00218, cpd00104, cpd00... \n", + "2 [cpd00104, cpd00001, cpd00053, cpd00122, cpd03... \n", + "3 [cpd00104, cpd00001, cpd00053, cpd00122, cpd00... \n", + "4 [cpd00104, cpd00001, cpd00053, cpd00122, cpd00... \n", + "5 [cpd00122, cpd01171, cpd00100, cpd00104, cpd00... \n", + "6 [cpd00060, cpd00104, cpd00001, cpd00053, cpd00... \n", + "7 [cpd00118, cpd00104, cpd00001, cpd00053, cpd00... \n", + "8 [cpd00122, cpd00129, cpd00100, cpd00104, cpd00... \n", + "9 [cpd00082, cpd00129, cpd00218, cpd00104, cpd00... \n", + "10 [cpd00104, cpd00001, cpd00161, cpd00029, cpd00... \n", + "11 [cpd00122, cpd00129, cpd00116, cpd00218, cpd00... \n", + "12 [cpd00122, cpd00147, cpd00129, cpd00218, cpd00... \n", + "13 [cpd00104, cpd00001, cpd00122, cpd00161, cpd00... \n", + "14 [cpd00129, cpd00116, cpd01171, cpd00100, cpd00... \n", + "15 [cpd00104, cpd00001, cpd00122, cpd00161, cpd00... \n", + "16 [cpd00118, cpd00104, cpd00001, cpd00161, cpd00... \n", + "17 [cpd00104, cpd00001, cpd00122, cpd00161, cpd00... \n", + "18 [cpd00082, cpd00129, cpd00116, cpd00218, cpd00... \n", + "19 [cpd00122, cpd00001, cpd03279, cpd01914, cpd00... \n", + "20 [cpd00053, cpd00001, cpd00122, cpd00147, cpd01... \n", + "21 [cpd00122, cpd00001, cpd01914, cpd00129, cpd00... \n", + "22 [cpd00118, cpd00001, cpd01914, cpd00129, cpd00... \n", + "23 [cpd00122, cpd00001, cpd01914, cpd00129, cpd00... \n", + "24 [cpd00118, cpd00104, cpd00001, cpd01914, cpd00... \n", + "25 [cpd00122, cpd00001, cpd01914, cpd00129, cpd00... \n", + "26 [cpd00082, cpd00129, cpd00116, cpd00130, cpd00... \n", + "27 [cpd00122, cpd00001, cpd00053, cpd00147, cpd03... \n", + "28 [cpd00122, cpd00001, cpd03279, cpd00129, cpd00... \n", + "29 [cpd00118, cpd00122, cpd00001, cpd03279, cpd00... \n", + "30 [cpd00122, cpd00001, cpd03279, cpd00129, cpd00... \n", + "31 [cpd00118, cpd00122, cpd00001, cpd00104, cpd03... \n", + "32 [cpd00122, cpd00001, cpd03279, cpd00129, cpd00... \n", + "33 [cpd00122, cpd00082, cpd00129, cpd00116, cpd00... \n", + "34 [cpd00053, cpd00001, cpd00122, cpd00147, cpd00... \n", + "35 [cpd00122, cpd00147, cpd00129, cpd00116, cpd01... \n", + "36 [cpd00053, cpd00001, cpd00122, cpd00147, cpd00... \n", + "37 [cpd00118, cpd00053, cpd00001, cpd00122, cpd00... \n", + "38 [cpd00053, cpd00001, cpd00122, cpd00147, cpd00... \n", + "39 [cpd00122, cpd00147, cpd00082, cpd00129, cpd00... \n", + "40 [cpd00118, cpd00122, cpd00001, cpd00129, cpd00... \n", + "41 [cpd00122, cpd00001, cpd00129, cpd00035, cpd00... \n", + "42 [cpd00118, cpd00122, cpd00001, cpd00104, cpd00... \n", + "43 [cpd00122, cpd00001, cpd00024, cpd00129, cpd00... \n", + "44 [cpd00122, cpd00082, cpd00129, cpd00116, cpd00... \n", + "45 [cpd00118, cpd00314, cpd00001, cpd00122, cpd00... \n", + "46 [cpd00118, cpd00104, cpd00001, cpd00029, cpd00... \n", + "47 [cpd00118, cpd00122, cpd00001, cpd00024, cpd00... \n", + "48 [cpd00082, cpd00129, cpd00116, cpd01171, cpd00... \n", + "49 [cpd00118, cpd00122, cpd00001, cpd00104, cpd00... \n", + "50 [cpd00122, cpd00001, cpd00024, cpd00129, cpd00... \n", + "51 [cpd00122, cpd00082, cpd00129, cpd00116, cpd00... \n", + "52 [cpd00118, cpd00104, cpd00001, cpd00122, cpd00... \n", + "53 [cpd00082, cpd00129, cpd00116, cpd00104, cpd00... \n", + "54 [cpd00122, cpd00082, cpd00129, cpd00116, cpd00... \n", + "\n", + " MIP model1 metabolites \\\n", + "0 [cpd00013, cpd00035, cpd00041, cpd00069, cpd00... \n", + "1 [cpd00013, cpd00129, cpd00161, cpd00023, cpd00... \n", + "2 [cpd00161, cpd00023, cpd00013, cpd00054, cpd00... \n", + "3 [cpd00119, cpd00129, cpd00161, cpd00023, cpd00... \n", + "4 [cpd00013, cpd00009, cpd00161, cpd00023, cpd00... \n", + "5 [cpd00060, cpd00119, cpd00013, cpd00129, cpd00... \n", + "6 [cpd00322, cpd00060, cpd00066, cpd00069, cpd00... \n", + "7 [cpd00013] \n", + "8 [cpd00013, cpd00107, cpd00119, cpd00129, cpd00... \n", + "9 [cpd00041, cpd00129, cpd00161, cpd00023, cpd00... \n", + "10 [cpd00067, cpd00971, cpd00129] \n", + "11 [cpd00129] \n", + "12 [None] \n", + "13 [None] \n", + "14 [cpd00054] \n", + "15 [None] \n", + "16 [cpd00013] \n", + "17 [None] \n", + "18 [cpd00129, cpd00054] \n", + "19 [cpd00161, cpd00067] \n", + "20 [cpd00067] \n", + "21 [cpd10515, cpd00013] \n", + "22 [cpd10515, cpd00054, cpd00161, cpd00067] \n", + "23 [cpd00023, cpd10515, cpd00067] \n", + "24 [cpd00067] \n", + "25 [cpd00161] \n", + "26 [cpd00161, cpd00054, cpd00067, cpd00035, cpd00... \n", + "27 [cpd00322, cpd00033] \n", + "28 [cpd00013, cpd00322, cpd00033, cpd10515] \n", + "29 [cpd00161, cpd00033, cpd00013, cpd10515] \n", + "30 [cpd10515, cpd00033] \n", + "31 [] \n", + "32 [cpd00033, cpd10515, cpd00013] \n", + "33 [cpd00023, cpd00054] \n", + "34 [cpd00035, cpd00322] \n", + "35 [cpd00161] \n", + "36 [cpd00129] \n", + "37 [cpd00013] \n", + "38 [cpd00322] \n", + "39 [cpd00119, cpd00129] \n", + "40 [cpd00129] \n", + "41 [cpd00013, cpd00035, cpd00322, cpd00129] \n", + "42 [cpd10515] \n", + "43 [cpd00013] \n", + "44 [cpd00054, cpd00092, cpd00129] \n", + "45 [cpd00013, cpd00322, cpd00161, cpd00129] \n", + "46 [] \n", + "47 [cpd00013, cpd00129, cpd00322] \n", + "48 [cpd00161, cpd00092, cpd00039, cpd00035] \n", + "49 [] \n", + "50 [cpd00013] \n", + "51 [cpd00161] \n", + "52 [cpd00033, cpd00322, cpd00129, cpd00035, cpd00... \n", + "53 [cpd00129, cpd00041, cpd00035, cpd00054, cpd00... \n", + "54 [cpd00129] \n", + "\n", + " MIP model2 metabolites \\\n", + "0 [cpd00118, cpd00132] \n", + "1 [cpd00067, cpd00132] \n", + "2 [cpd00067] \n", + "3 [] \n", + "4 [cpd00053, cpd00118] \n", + "5 [] \n", + "6 [cpd00118] \n", + "7 [] \n", + "8 [cpd00132, cpd00053] \n", + "9 [cpd00067] \n", + "10 [cpd00067] \n", + "11 [cpd10515] \n", + "12 [None] \n", + "13 [None] \n", + "14 [] \n", + "15 [None] \n", + "16 [cpd00129, cpd00041, cpd00035] \n", + "17 [None] \n", + "18 [cpd00035, cpd10515, cpd00067, cpd00161] \n", + "19 [cpd00067] \n", + "20 [cpd00023, cpd00041] \n", + "21 [cpd00041, cpd00033, cpd00067] \n", + "22 [cpd00067, cpd00041] \n", + "23 [cpd00041, cpd00067] \n", + "24 [cpd00067, cpd00033, cpd00129] \n", + "25 [cpd00129, cpd00067] \n", + "26 [cpd00129, cpd00067, cpd00971, cpd00023] \n", + "27 [cpd00184, cpd00013, cpd00041, cpd00023, cpd00... \n", + "28 [cpd00129, cpd00035, cpd00041] \n", + "29 [cpd00054, cpd00041] \n", + "30 [cpd00041] \n", + "31 [cpd00161, cpd00129, cpd00035, cpd00013] \n", + "32 [cpd00161, cpd00041, cpd00054] \n", + "33 [cpd00067, cpd00035, cpd00246, cpd00033] \n", + "34 [cpd00129, cpd00013] \n", + "35 [cpd00322, cpd00129] \n", + "36 [cpd00013, cpd00322] \n", + "37 [cpd00033, cpd00322, cpd00161, cpd00129] \n", + "38 [cpd00013, cpd00161, cpd00129] \n", + "39 [cpd00054, cpd00067, cpd00092] \n", + "40 [cpd00041, cpd00013] \n", + "41 [] \n", + "42 [cpd00013, cpd00129, cpd00041, cpd00033] \n", + "43 [cpd00129, cpd00035, cpd00041, cpd10515] \n", + "44 [cpd10515, cpd00119, cpd00067, cpd00033] \n", + "45 [cpd00054] \n", + "46 [cpd00161, cpd00129, cpd00054, cpd00033, cpd00... \n", + "47 [cpd00161, cpd00054] \n", + "48 [cpd10515, cpd00013, cpd00033, cpd00051, cpd00... \n", + "49 [cpd00035, cpd00033, cpd00013, cpd00084, cpd00... \n", + "50 [cpd00129, cpd00322] \n", + "51 [cpd00067, cpd00033, cpd00119] \n", + "52 [] \n", + "53 [cpd00067] \n", + "54 [cpd00039, cpd00067, cpd00322] \n", + "\n", + " BSS model1 metabolites \\\n", + "0 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "1 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "2 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "3 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "4 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "5 {cpd00683, cpd00295, cpd27744, cpd10516, cpd03... \n", + "6 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "7 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "8 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "9 {cpd00683, cpd00295, cpd10516, cpd27744, cpd15... \n", + "10 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "11 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "12 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "13 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "14 {cpd00683, cpd00295, cpd27744, cpd10516, cpd03... \n", + "15 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "16 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "17 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "18 {cpd00683, cpd00295, cpd10516, cpd27744, cpd15... \n", + "19 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "20 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "21 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "22 {cpd00683, cpd00295, cpd27744, cpd10516, cpd03... \n", + "23 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "24 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "25 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "26 {cpd00683, cpd00295, cpd10516, cpd27744, cpd15... \n", + "27 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "28 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "29 {cpd00683, cpd00295, cpd27744, cpd10516, cpd03... \n", + "30 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "31 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "32 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "33 {cpd00683, cpd00295, cpd10516, cpd27744, cpd15... \n", + "34 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "35 {cpd00683, cpd00295, cpd27744, cpd10516, cpd03... \n", + "36 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "37 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "38 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "39 {cpd00683, cpd00295, cpd10516, cpd27744, cpd15... \n", + "40 {cpd00683, cpd00295, cpd27744, cpd10516, cpd03... \n", + "41 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "42 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "43 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "44 {cpd00683, cpd00295, cpd10516, cpd27744, cpd15... \n", + "45 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "46 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "47 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "48 {cpd00683, cpd00295, cpd10516, cpd27744, cpd15... \n", + "49 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "50 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "51 {cpd00683, cpd00295, cpd10516, cpd27744, cpd15... \n", + "52 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "53 {cpd00683, cpd00295, cpd10516, cpd27744, cpd15... \n", + "54 {cpd00683, cpd00295, cpd10516, cpd27744, cpd15... \n", + "\n", + " BSS model2 metabolites \\\n", + "0 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "1 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "2 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "3 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "4 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "5 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "6 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "7 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "8 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "9 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "10 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "11 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "12 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "13 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "14 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "15 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "16 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "17 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "18 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "19 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "20 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "21 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "22 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "23 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "24 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "25 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "26 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "27 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "28 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "29 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "30 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "31 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "32 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "33 {cpd00683, cpd00295, cpd10516, cpd27744, cpd03... \n", + "34 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "35 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "36 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "37 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "38 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "39 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "40 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "41 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "42 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "43 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "44 {cpd00683, cpd00295, cpd10516, cpd15688, cpd02... \n", + "45 {cpd00683, cpd00295, cpd27744, cpd10516, cpd03... \n", + "46 {cpd00683, cpd00295, cpd27744, cpd10516, cpd03... \n", + "47 {cpd00683, cpd00295, cpd27744, cpd10516, cpd03... \n", + "48 {cpd00683, cpd00295, cpd27744, cpd10516, cpd03... \n", + "49 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "50 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "51 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "52 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "53 {cpd10516, cpd00295, cpd00297, cpd00125, cpd00... \n", + "54 {cpd00683, cpd00295, cpd10516, cpd03205, cpd15... \n", + "\n", + " fs_features \n", + "0 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "1 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd0... \n", + "2 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd0... \n", + "3 [{cpd00683, cpd00295, cpd10516, cpd15688, cpd0... \n", + "4 [{cpd00683, cpd00295, cpd10516, cpd15688, cpd0... \n", + "5 [{cpd00683, cpd00295, cpd27744, cpd10516, cpd0... \n", + "6 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "7 [{cpd10516, cpd00295, cpd00297, cpd00125, cpd0... \n", + "8 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "9 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd1... \n", + "10 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd0... \n", + "11 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd0... \n", + "12 [{cpd00683, cpd00295, cpd10516, cpd15688, cpd0... \n", + "13 [{cpd00683, cpd00295, cpd10516, cpd15688, cpd0... \n", + "14 [{cpd00683, cpd00295, cpd27744, cpd10516, cpd0... \n", + "15 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "16 [{cpd10516, cpd00295, cpd00297, cpd00125, cpd0... \n", + "17 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "18 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd1... \n", + "19 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd0... \n", + "20 [{cpd00683, cpd00295, cpd10516, cpd15688, cpd0... \n", + "21 [{cpd00683, cpd00295, cpd10516, cpd15688, cpd0... \n", + "22 [{cpd00683, cpd00295, cpd27744, cpd10516, cpd0... \n", + "23 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "24 [{cpd10516, cpd00295, cpd00297, cpd00125, cpd0... \n", + "25 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "26 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd1... \n", + "27 [{cpd00683, cpd00295, cpd10516, cpd15688, cpd0... \n", + "28 [{cpd00683, cpd00295, cpd10516, cpd15688, cpd0... \n", + "29 [{cpd00683, cpd00295, cpd27744, cpd10516, cpd0... \n", + "30 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "31 [{cpd10516, cpd00295, cpd00297, cpd00125, cpd0... \n", + "32 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "33 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd1... \n", + "34 [{cpd00683, cpd00295, cpd10516, cpd15688, cpd0... \n", + "35 [{cpd00683, cpd00295, cpd27744, cpd10516, cpd0... \n", + "36 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "37 [{cpd10516, cpd00295, cpd00297, cpd00125, cpd0... \n", + "38 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "39 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd1... \n", + "40 [{cpd00683, cpd00295, cpd27744, cpd10516, cpd0... \n", + "41 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "42 [{cpd10516, cpd00295, cpd00297, cpd00125, cpd0... \n", + "43 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "44 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd1... \n", + "45 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "46 [{cpd10516, cpd00295, cpd00297, cpd00125, cpd0... \n", + "47 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "48 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd1... \n", + "49 [{cpd10516, cpd00295, cpd00297, cpd00125, cpd0... \n", + "50 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "51 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd1... \n", + "52 [{cpd00683, cpd00295, cpd10516, cpd03205, cpd1... \n", + "53 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd1... \n", + "54 [{cpd00683, cpd00295, cpd10516, cpd27744, cpd1... " + ] + }, + "execution_count": 6, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from pandas import DataFrame\n", + "\n", + "mets_df = DataFrame(mets)\n", + "mets_df\n", + "\n", + "# print(len([metIDs for met in mets for kind, metIDs in met.items() if kind == \"mip_mets\"]))\n", + "# print(len([metIDs for met in mets for kind, metIDs in met.items() if kind == \"mro_mets\"]))\n", + "# mets_for_df = {\"MRO metabolites\": [metIDs for met in mets for kind, metIDs in met.items() if kind == \"mro_mets\"], \"MIP metabolites\": [metIDs for met in mets for kind, metIDs in met.items() if kind == \"mip_mets\"]}\n", + "# mets_df = DataFrame(data=mets_for_df)" + ] + }, + { + "cell_type": "code", + "execution_count": 32, + "id": "ba0f271c-e1d9-4639-b25a-8fa24e538d96", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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MRO metabolites
0EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00184_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0,
1EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00084_e0, EX_cpd00023_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n
2EX_cpd00009_e0, EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00184_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00654_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0,
3EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00184_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00239_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0,
4EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00030_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00023_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0,
5EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00039_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00393_e0\\nEX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n
6EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\\nEX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\\n
7EX_cpd00156_e0, EX_cpd00009_e0, EX_cpd00218_e0, EX_cpd00039_e0\\nEX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\\nEX_cpd00654_e0, EX_cpd00018_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00438_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00126_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00091_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00033_e0, EX_cpd00023_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0\\nEX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0\\nEX_cpd00046_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0, EX_cpd00035_e0,
8EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00239_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\\nEX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0,
9EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00654_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00438_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0\\nEX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0,
10EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n
11EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0,
12EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0,
13EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd10516_e0, EX_cpd00053_e0, EX_cpd00030_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0,
14EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0,
15EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0\\nEX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00039_e0,
16EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00184_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00053_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0\\nEX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00039_e0,
17EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\\nEX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00307_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0,
18EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0,
19EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0,
20EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0,
21EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00023_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0,
22EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0,
23EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00132_e0,
24EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00023_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0,
25EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n
26EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00355_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0,
27EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n
28EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\\n
29EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00794_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0,
30EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\\n
31EX_cpd00009_e0, EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00184_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00654_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00027_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0,
32EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\\n
33EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00654_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, EX_cpd00209_e0\\n
34EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0\\nEX_cpd00644_e0, EX_cpd00092_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n
35EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0,
36EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00106_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00100_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0,
37EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00184_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0\\nEX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n
38EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00239_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n
39EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00100_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0,
40EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00179_e0, EX_cpd00104_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00039_e0,
41EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\\n
42EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00053_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00023_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00039_e0,
43EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00179_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0,
44EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00039_e0,
45EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00307_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0,
46EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00039_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0\\nEX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0,
47EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00179_e0, EX_cpd00104_e0, EX_cpd00051_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00393_e0, EX_cpd00058_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0,
48EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00162_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0\\nEX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00215_e0\\nEX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0, EX_cpd00209_e0,
49EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00067_e0, EX_cpd00149_e0\\nEX_cpd00065_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0\\nEX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00039_e0,
50EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00067_e0, EX_cpd00149_e0, EX_cpd00065_e0, EX_cpd10515_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00041_e0\\nEX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00731_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\\n
51EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00215_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00100_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0,
52EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00067_e0, EX_cpd00149_e0\\nEX_cpd00065_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0\\nEX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0,
53EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\\nEX_cpd00654_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00438_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0\\nEX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0,
54EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00024_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0,
\n", + "
" + ], + "text/plain": [ + " MRO metabolites\n", + "0 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00184_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0, \n", + "1 EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00084_e0, EX_cpd00023_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n \n", + "2 EX_cpd00009_e0, EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00184_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00654_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0, \n", + "3 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00184_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00239_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, \n", + "4 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00030_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00023_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0, \n", + "5 EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00039_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00393_e0\\nEX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n \n", + "6 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\\nEX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\\n \n", + "7 EX_cpd00156_e0, EX_cpd00009_e0, EX_cpd00218_e0, EX_cpd00039_e0\\nEX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\\nEX_cpd00654_e0, EX_cpd00018_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00438_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00126_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00091_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00033_e0, EX_cpd00023_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0\\nEX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0\\nEX_cpd00046_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0, EX_cpd00035_e0, \n", + "8 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00239_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\\nEX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, \n", + "9 EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00654_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00438_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0\\nEX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0, \n", + "10 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n \n", + "11 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, \n", + "12 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, \n", + "13 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd10516_e0, EX_cpd00053_e0, EX_cpd00030_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0, \n", + "14 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0, \n", + "15 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0\\nEX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00039_e0, \n", + "16 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00184_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00053_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0\\nEX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00039_e0, \n", + "17 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\\nEX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00307_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0, \n", + "18 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, \n", + "19 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0, \n", + "20 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, \n", + "21 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00023_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0, \n", + "22 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0, \n", + "23 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00132_e0, \n", + "24 EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00023_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, \n", + "25 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n \n", + "26 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00355_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0, \n", + "27 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n \n", + "28 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\\n \n", + "29 EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00794_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0, \n", + "30 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\\n \n", + "31 EX_cpd00009_e0, EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00184_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00654_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00027_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, \n", + "32 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\\n \n", + "33 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00654_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, EX_cpd00209_e0\\n \n", + "34 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0\\nEX_cpd00644_e0, EX_cpd00092_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n \n", + "35 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, \n", + "36 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00106_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00100_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0, \n", + "37 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00184_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0\\nEX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n \n", + "38 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00239_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\\n \n", + "39 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00100_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0, \n", + "40 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00179_e0, EX_cpd00104_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00039_e0, \n", + "41 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\\nEX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0\\nEX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\\n \n", + "42 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00053_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00023_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00039_e0, \n", + "43 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00179_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0, \n", + "44 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00039_e0, \n", + "45 EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\\nEX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\\nEX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0\\nEX_cpd00307_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, \n", + "46 EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00039_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0\\nEX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0, \n", + "47 EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e0, EX_cpd00039_e0\\nEX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\\nEX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00179_e0, EX_cpd00104_e0, EX_cpd00051_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00393_e0, EX_cpd00058_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, \n", + "48 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\\nEX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\\nEX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00162_e0\\nEX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\\nEX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0\\nEX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\\nEX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00215_e0\\nEX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00132_e0, EX_cpd00209_e0, \n", + "49 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00067_e0, EX_cpd00149_e0\\nEX_cpd00065_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0\\nEX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0\\nEX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\\nEX_cpd00063_e0, EX_cpd00039_e0, \n", + "50 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\\nEX_cpd00067_e0, EX_cpd00149_e0, EX_cpd00065_e0, EX_cpd10515_e0\\nEX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\\nEX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\\nEX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00041_e0\\nEX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00731_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\\n \n", + "51 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00215_e0, EX_cpd00058_e0\\nEX_cpd00393_e0, EX_cpd00100_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0, \n", + "52 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00067_e0, EX_cpd00149_e0\\nEX_cpd00065_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\\nEX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0\\nEX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0\\nEX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0, \n", + "53 EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\\nEX_cpd00654_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\\nEX_cpd00438_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\\nEX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\\nEX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0\\nEX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0\\nEX_cpd00039_e0, \n", + "54 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\\nEX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0\\nEX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\\nEX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\\nEX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00024_e0\\nEX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0\\nEX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\\nEX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0\\nEX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, " + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "from pandas import set_option\n", + "\n", + "set_option('max_colwidth', 0)\n", + "\n", + "refined_mets_df = DataFrame(data={\"MRO metabolites\": processed_mets})\n", + "display(refined_mets_df)" + ] + }, + { + "cell_type": "code", + "execution_count": 21, + "id": "95aa355f-69bb-48cc-bd80-bc44e3a10d5e", + "metadata": { + "scrolled": true, + "tags": [] + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00184_e0, EX_cpd00065_e0\n", + "EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\n", + "EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0\n", + "EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00039_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0\n", + "EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00084_e0, EX_cpd00023_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\n", + "\n", + "\n", + "EX_cpd00009_e0, EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00184_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00654_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0\n", + "EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00039_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00184_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0\n", + "EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00239_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\n", + "EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0\n", + "EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00030_e0\n", + "EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00023_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00039_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00039_e0, EX_cpd00065_e0\n", + "EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\n", + "EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00393_e0\n", + "EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\n", + "\n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0\n", + "EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\n", + "EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\n", + "\n", + "\n", + "EX_cpd00156_e0, EX_cpd00009_e0, EX_cpd00218_e0, EX_cpd00039_e0\n", + "EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\n", + "EX_cpd00654_e0, EX_cpd00018_e0, EX_cpd00034_e0, EX_cpd00793_e0\n", + "EX_cpd00220_e0, EX_cpd00438_e0, EX_cpd00028_e0, EX_cpd10516_e0\n", + "EX_cpd00126_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00091_e0, EX_cpd00322_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00033_e0, EX_cpd00023_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0\n", + "EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0\n", + "EX_cpd00046_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00132_e0, EX_cpd00035_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0\n", + "EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00239_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\n", + "EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0\n", + "EX_cpd00007_e0, EX_cpd00654_e0, EX_cpd00034_e0, EX_cpd00793_e0\n", + "EX_cpd00220_e0, EX_cpd00438_e0, EX_cpd00028_e0, EX_cpd10516_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0\n", + "EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00132_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0\n", + "EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\n", + "\n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0\n", + "EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0\n", + "EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0\n", + "EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\n", + "EX_cpd10516_e0, EX_cpd00053_e0, EX_cpd00030_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0\n", + "EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00039_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\n", + "EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0\n", + "EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00039_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\n", + "EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0\n", + "EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\n", + "EX_cpd00063_e0, EX_cpd00039_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00184_e0, EX_cpd00065_e0\n", + "EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\n", + "EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\n", + "EX_cpd00053_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\n", + "EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0\n", + "EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\n", + "EX_cpd00063_e0, EX_cpd00039_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\n", + "EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\n", + "EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00307_e0\n", + "EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00039_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\n", + "EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\n", + "EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\n", + "EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\n", + "EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\n", + "EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\n", + "EX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0\n", + "EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00023_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\n", + "EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00132_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0\n", + "EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\n", + "EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\n", + "EX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0\n", + "EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\n", + "EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\n", + "EX_cpd00063_e0, EX_cpd00132_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0\n", + "EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00023_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\n", + "EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0\n", + "EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\n", + "\n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\n", + "EX_cpd00355_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\n", + "EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\n", + "EX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\n", + "EX_cpd00118_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0\n", + "EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\n", + "EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\n", + "EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\n", + "\n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\n", + "\n", + "\n", + "EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e0, EX_cpd00039_e0\n", + "EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\n", + "EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00794_e0\n", + "EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\n", + "EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0\n", + "EX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0\n", + "EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\n", + "\n", + "\n", + "EX_cpd00009_e0, EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00184_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00654_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0\n", + "EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\n", + "EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00027_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0\n", + "EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\n", + "EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0\n", + "EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\n", + "\n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\n", + "EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00654_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0\n", + "EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0\n", + "EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, EX_cpd00209_e0\n", + "\n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\n", + "EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0\n", + "EX_cpd00644_e0, EX_cpd00092_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\n", + "\n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\n", + "EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\n", + "EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0\n", + "EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\n", + "EX_cpd00118_e0, EX_cpd00106_e0, EX_cpd00065_e0, EX_cpd00149_e0\n", + "EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\n", + "EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\n", + "EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00100_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00132_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00184_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0\n", + "EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\n", + "\n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0\n", + "EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\n", + "EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0\n", + "EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00104_e0, EX_cpd00239_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0\n", + "\n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00100_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00132_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00179_e0, EX_cpd00104_e0, EX_cpd00084_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\n", + "EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\n", + "EX_cpd00063_e0, EX_cpd00039_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\n", + "EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0\n", + "EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0\n", + "EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\n", + "\n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0\n", + "EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00053_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00023_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0\n", + "EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0\n", + "EX_cpd00063_e0, EX_cpd00039_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00179_e0, EX_cpd00104_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0\n", + "EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00039_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\n", + "EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\n", + "EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\n", + "EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\n", + "EX_cpd00063_e0, EX_cpd00039_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e0, EX_cpd00039_e0\n", + "EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\n", + "EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0\n", + "EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0\n", + "EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00104_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0\n", + "EX_cpd00307_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00039_e0, EX_cpd00065_e0\n", + "EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\n", + "EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\n", + "EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0\n", + "EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00132_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e0, EX_cpd00039_e0\n", + "EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0\n", + "EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0\n", + "EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00179_e0, EX_cpd00104_e0, EX_cpd00051_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\n", + "EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00393_e0, EX_cpd00058_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0\n", + "EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0\n", + "EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00162_e0\n", + "EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0\n", + "EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0\n", + "EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0\n", + "EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0\n", + "EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00215_e0\n", + "EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00132_e0, EX_cpd00209_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00067_e0, EX_cpd00149_e0\n", + "EX_cpd00065_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\n", + "EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0\n", + "EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0\n", + "EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0\n", + "EX_cpd00063_e0, EX_cpd00039_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0\n", + "EX_cpd00067_e0, EX_cpd00149_e0, EX_cpd00065_e0, EX_cpd10515_e0\n", + "EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0\n", + "EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0\n", + "EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00041_e0\n", + "EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00731_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0\n", + "\n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\n", + "EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\n", + "EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00215_e0, EX_cpd00058_e0\n", + "EX_cpd00393_e0, EX_cpd00100_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00039_e0, \n", + "\n", + "EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00067_e0, EX_cpd00149_e0\n", + "EX_cpd00065_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0\n", + "EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0\n", + "EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0\n", + "EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00039_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0\n", + "EX_cpd00654_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0\n", + "EX_cpd00438_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0\n", + "EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0\n", + "EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0\n", + "EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0\n", + "EX_cpd00039_e0, \n", + "\n", + "EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0\n", + "EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0\n", + "EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0\n", + "EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0\n", + "EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00024_e0\n", + "EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0\n", + "EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0\n", + "EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0\n", + "EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, \n", + "\n" + ] + } + ], + "source": [ + "processed_mets = []\n", + "for met in mets:\n", + " string = \"\"\n", + " for index, metID in enumerate(met[\"MRO metabolites\"]):\n", + " index += 1\n", + " if index%4 == 0: string += f\"{metID}\\n\"\n", + " else: string += f\"{metID}, \"\n", + " print(string)\n", + " print()\n", + " processed_mets.append(string)\n", + " # delimited_mets = \", \".join(met[\"MRO metabolites\"])\n", + " # broken_mets = \n", + " # print(\"\\n\".join(met[\"MRO metabolites\"]))\n", + "# display({\"MRO metabolites\": [\"\\n\".join(met[\"MRO metabolites\"]) for met in mets]})" + ] + }, + { + "cell_type": "code", + "execution_count": 33, + "id": "15099e87-3d93-4229-b598-0bdf75300a22", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "0 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "1 EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00023_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "2 EX_cpd00009_e0, EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00654_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "3 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00239_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "4 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00023_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "5 EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "6 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "7 EX_cpd00156_e0, EX_cpd00009_e0, EX_cpd00218_e0, EX_cpd00039_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00654_e0, EX_cpd00018_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00126_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00091_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00033_e0, EX_cpd00023_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00046_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00035_e0\n", + "8 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00239_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "9 EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00654_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "10 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "11 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "12 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "13 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00053_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "14 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "15 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "16 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00053_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "17 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "18 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "19 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0 \n", + "20 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "21 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00023_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "22 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0 \n", + "23 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "24 EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00023_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "25 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "26 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00355_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0 \n", + "27 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "28 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "29 EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0 \n", + "30 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "31 EX_cpd00009_e0, EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00654_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00027_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "32 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "33 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00654_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0, EX_cpd00209_e0 \n", + "34 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00092_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "35 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "36 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00106_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00100_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "37 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00039_e0, EX_cpd00184_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "38 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00239_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "39 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00100_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "40 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00179_e0, EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "41 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "42 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00053_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00023_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00060_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "43 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00179_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "44 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "45 EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "46 EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00039_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00129_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "47 EX_cpd00156_e0, EX_cpd00218_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00276_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00179_e0, EX_cpd00104_e0, EX_cpd00051_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0 \n", + "48 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00039_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00162_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00084_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00132_e0, EX_cpd00209_e0 \n", + "49 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00067_e0, EX_cpd00149_e0, EX_cpd00065_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "50 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00067_e0, EX_cpd00149_e0, EX_cpd00065_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00794_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00731_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "51 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00084_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00215_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00100_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "52 EX_cpd00218_e0, EX_cpd00156_e0, EX_cpd00067_e0, EX_cpd00149_e0, EX_cpd00065_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00053_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00041_e0, EX_cpd00107_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "53 EX_cpd00156_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd00007_e0, EX_cpd00654_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00438_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd10516_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00215_e0, EX_cpd00393_e0, EX_cpd00058_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "54 EX_cpd00156_e0, EX_cpd00264_e0, EX_cpd00118_e0, EX_cpd00065_e0, EX_cpd00149_e0, EX_cpd10515_e0, EX_cpd00007_e0, EX_cpd00034_e0, EX_cpd00793_e0, EX_cpd00220_e0, EX_cpd00132_e0, EX_cpd00028_e0, EX_cpd00030_e0, EX_cpd00017_e0, EX_cpd00205_e0, EX_cpd00161_e0, EX_cpd00322_e0, EX_cpd00066_e0, EX_cpd00069_e0, EX_cpd00024_e0, EX_cpd00644_e0, EX_cpd00048_e0, EX_cpd00051_e0, EX_cpd00104_e0, EX_cpd00119_e0, EX_cpd00254_e0, EX_cpd00080_e0, EX_cpd00054_e0, EX_cpd00107_e0, EX_cpd00307_e0, EX_cpd00058_e0, EX_cpd00393_e0, EX_cpd00099_e0, EX_cpd00063_e0, EX_cpd00039_e0 \n", + "Name: MRO metabolites, dtype: object" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "processed_mro_mets = [\", \".join(met[\"MRO metabolites\"]) for met in mets]\n", + "refined_mets_df = DataFrame(data={\"MRO metabolites\": processed_mro_mets})\n", + "# refined_mets_df[\"MRO metabolites\"] = refined_mets_df[\"MRO metabolites\"].str.wrap(100)\n", + "display(refined_mets_df[\"MRO metabolites\"])\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "3bc4bc0d-6392-4e86-af25-82a91776e447", + "metadata": {}, + "outputs": [], + "source": [ + "report = commscores_report(df, mets)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "adf5b0ee-6d9c-4339-8b3b-9bf76f1d424e", + "metadata": {}, + "outputs": [], + "source": [ + "Environment0 = {'cpd00063': 1000, 'cpd00099': 1000, 'cpd00149': 1000, 'cpd00058': 1000, 'cpd10515': 1000, 'cpd10516': 1000, 'cpd00001': 1000, 'cpd00205': 1000, 'cpd00254': 1000, 'cpd00030': 1000, 'cpd11574': 1000, 'cpd00971': 1000, 'cpd00013': 1000, 'cpd00244': 1000, 'cpd00007': 1000, 'cpd00009': 1000, 'cpd00048': 1000, 'cpd00034': 1000, 'cpd00305': 1000, 'cpd00104': 1000, 'cpd00220': 1000, 'cpd00215': 1000, 'cpd00635': 1000, 'cpd00541': 1000, 'cpd00393': 1000, 'cpd00644': 1000, 'cpd00218': 1000, 'cpd00443': 1000, 'cpd00027': 1000}\n" + ] + }, + { + "cell_type": "markdown", + "id": "46a3b5b8-75a8-4bf3-b0bb-0e51b851c529", + "metadata": {}, + "source": [ + "# Test mets object" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "eafee99d-53f5-4509-9551-e2fb78c832b9", + "metadata": {}, + "outputs": [], + "source": [ + "mets = [{\"mro_mets\": list(mro_values.values()), \"mip_mets\": mip_values[0]}]" ] } ], diff --git a/examples/Community Modeling/smetana/commscores_report.csv b/examples/Community Modeling/smetana/commscores_report.csv new file mode 100644 index 00000000..50bd2b37 --- /dev/null +++ b/examples/Community Modeling/smetana/commscores_report.csv @@ -0,0 +1,56 @@ +,model1,model2,media,model1 growth,model2 growth,community growth,MRO_model1,MRO_model2,CIP,MIP_model1 (costless),MIP_model2 (costless),BSS_model1,BSS_model2,PC_comm,PC_model1,PC_model2,BIT,GYD,FS +0,GCF_001421425.1.RAST.fbamodel,GCF_001423785.1.RAST.fbamodel,R2A_M,134.38,68.376,136.75,72.549% (37/51),82.222% (37/45),24,15 (3),4 (2),73.333%,66.667%,1.2025,1.0461,1.414,commensalism,0.35172,0.25651 +1,GCF_001421425.1.RAST.fbamodel,GCF_001423565.1_Leaf145.fna_genome.fbamodel,R2A_M,65.365,48.135,96.27,64.706% (33/51),66.000% (33/50),21,1 (0),7 (3),78.0%,23.529%,0.85052,0.7364,1.0065,amensalism,0.36681,0.0 +2,GCF_001421425.1.RAST.fbamodel,GCF_001422185.1.RAST.fbamodel,R2A_M,65.365,120.25,113.65,68.627% (35/51),92.105% (35/38),25,9 (3),3 (0),71.053%,68.627%,1.0277,0.86933,1.2567,parasitism,0.44565,0.34021 +3,GCF_001421425.1.RAST.fbamodel,GCF_001421805.1.RAST.fbamodel,R2A_M,65.365,86.809,136.45,70.588% (36/51),76.596% (36/47),24,8 (3),2 (0),72.34%,68.627%,1.1348,1.0437,1.2434,commensalism,0.19126,0.34713 +4,GCF_001421425.1.RAST.fbamodel,GCF_001421235.1_Leaf202.fna_genome.fbamodel,R2A_M,65.365,49.604,99.208,64.706% (33/51),68.750% (33/48),22,1 (1),7 (5),77.083%,19.608%,0.86576,0.75888,1.0077,amensalism,0.32786,0.0 +5,GCF_001421425.1.RAST.fbamodel,GCF_001421165.1.RAST.fbamodel,R2A_M,65.365,51.069,92.928,64.706% (33/51),80.488% (33/41),24,11 (3),1 (1),78.049%,66.667%,0.84274,0.71083,1.0348,amensalism,0.45571,0.25436 +6,GCF_001421425.1.RAST.fbamodel,GCF_001423105.1.RAST.fbamodel,R2A_M,65.365,59.161,118.32,68.627% (35/51),87.500% (35/40),21,11 (2),5 (2),75.0%,60.784%,1.8102,0.90509,,,,0.25368 +7,GCF_001421425.1.RAST.fbamodel,GCF_001426165.RAST.fbamodel,R2A_M,65.365,92.093,138.0,74.510% (38/51),86.364% (38/44),25,11 (3),1 (1),70.455%,70.588%,1.1213,1.0556,1.1958,commensalism,0.13278,0.29827 +8,GCF_001421425.1.RAST.fbamodel,GCF_001423665.1.RAST.fbamodel,R2A_M,65.365,63.018,126.04,66.667% (34/51),79.070% (34/43),23,9 (4),4 (1),72.093%,64.706%,1.0196,0.96408,1.0819,neutral,0.12222,0.25098 +9,GCF_001421425.1.RAST.fbamodel,GCF_001424595.1.RAST.fbamodel,R2A_M,65.365,77.067,116.7,68.627% (35/51),77.778% (35/45),25,11 (3),3 (1),71.111%,68.627%,0.99996,0.89269,1.1365,parasitism,0.27317,0.25079 +10,GCF_001423785.1.RAST.fbamodel,GCF_001423565.1_Leaf145.fna_genome.fbamodel,R2A_M,48.357,47.823,75.233,75.556% (34/45),68.000% (34/50),17,0 (0),5 (4),76.0%,33.333%,0.7822,0.77789,0.78657,competitive,0.011165,0.0 +11,GCF_001423785.1.RAST.fbamodel,GCF_001422185.1.RAST.fbamodel,R2A_M,48.357,45.215,57.532,75.556% (34/45),89.474% (34/38),14,2 (1),4 (2),65.789%,71.111%,0.61484,0.59486,0.6362,competitive,0.06949,0.30249 +12,GCF_001423785.1.RAST.fbamodel,GCF_001421805.1.RAST.fbamodel,R2A_M,48.357,54.871,69.48,80.000% (36/45),76.596% (36/47),17,2 (0),2 (1),68.085%,71.111%,0.67307,0.7184,0.63313,competitive,0.13469,0.30467 +13,GCF_001423785.1.RAST.fbamodel,GCF_001421235.1_Leaf202.fna_genome.fbamodel,R2A_M,48.357,49.226,77.328,71.111% (32/45),66.667% (32/48),16,0 (0),5 (3),75.0%,28.889%,0.79243,0.79955,0.78544,competitive,0.017963,0.0 +14,GCF_001423785.1.RAST.fbamodel,GCF_001421165.1.RAST.fbamodel,R2A_M,48.357,44.903,66.836,82.222% (37/45),90.244% (37/41),18,1 (1),1 (1),75.61%,66.667%,0.71666,0.69106,0.74423,competitive,0.076938,0.58231 +15,GCF_001423785.1.RAST.fbamodel,GCF_001423105.1.RAST.fbamodel,R2A_M,48.357,0.0,0.0,84.444% (38/45),95.000% (38/40),17,,,70.0%,66.667%,0.0,0.0,,,,0.59298 +16,GCF_001423785.1.RAST.fbamodel,GCF_001426165.RAST.fbamodel,R2A_M,48.357,57.704,60.993,86.667% (39/45),88.636% (39/44),16,3 (0),2 (1),63.636%,71.111%,0.57507,0.63065,0.5285,competitive,0.19327,0.46372 +17,GCF_001423785.1.RAST.fbamodel,GCF_001423665.1.RAST.fbamodel,R2A_M,48.357,58.247,74.893,80.000% (36/45),83.721% (36/43),14,1 (1),3 (2),69.767%,64.444%,0.70254,0.77437,0.6429,competitive,0.2045,0.59201 +18,GCF_001423785.1.RAST.fbamodel,GCF_001424595.1.RAST.fbamodel,R2A_M,48.357,51.341,57.925,88.889% (40/45),88.889% (40/45),14,2 (1),0 (0),66.667%,68.889%,0.58101,0.59893,0.56413,competitive,0.061693,0.58008 +19,GCF_001423565.1_Leaf145.fna_genome.fbamodel,GCF_001422185.1.RAST.fbamodel,R2A_M,47.823,45.215,68.732,62.000% (31/50),81.579% (31/38),14,4 (3),1 (0),26.316%,78.0%,0.73875,0.71861,0.76005,competitive,0.05768,0.0 +20,GCF_001423565.1_Leaf145.fna_genome.fbamodel,GCF_001421805.1.RAST.fbamodel,R2A_M,47.823,54.871,82.273,78.000% (39/50),82.979% (39/47),18,4 (3),0 (0),29.787%,78.0%,0.80115,0.86018,0.7497,competitive,0.14736,0.0 +21,GCF_001423565.1_Leaf145.fna_genome.fbamodel,GCF_001421235.1_Leaf202.fna_genome.fbamodel,R2A_M,47.823,49.226,68.4,92.000% (46/50),95.833% (46/48),9,0 (0),1 (1),33.333%,34.0%,0.70479,0.71513,0.69475,competitive,0.029329,0.0000 +22,GCF_001423565.1_Leaf145.fna_genome.fbamodel,GCF_001421165.1.RAST.fbamodel,R2A_M,47.823,44.903,66.849,64.000% (32/50),78.049% (32/41),16,4 (3),1 (1),31.707%,72.0%,0.72093,0.69892,0.74438,competitive,0.065046,0.0 +23,GCF_001423565.1_Leaf145.fna_genome.fbamodel,GCF_001423105.1.RAST.fbamodel,R2A_M,47.823,0.0,79.029,68.000% (34/50),85.000% (34/40),13,3 (1),1 (1),27.5%,66.0%,1.6525,0.82626,,,,0.0 +24,GCF_001423565.1_Leaf145.fna_genome.fbamodel,GCF_001426165.RAST.fbamodel,R2A_M,47.823,57.704,93.497,66.000% (33/50),75.000% (33/44),17,7 (4),0 (0),25.0%,76.0%,0.886,0.97752,0.81015,amensalism,0.2066,0.0 +25,GCF_001423565.1_Leaf145.fna_genome.fbamodel,GCF_001423665.1.RAST.fbamodel,R2A_M,47.823,58.247,87.065,68.000% (34/50),79.070% (34/43),16,4 (4),0 (0),30.233%,70.0%,0.82082,0.91027,0.74738,amensalism,0.21795,0.0 +26,GCF_001423565.1_Leaf145.fna_genome.fbamodel,GCF_001424595.1.RAST.fbamodel,R2A_M,47.823,51.341,79.785,66.000% (33/50),73.333% (33/45),14,5 (3),1 (1),28.889%,74.0%,0.80458,0.83417,0.77702,competitive,0.073547,0.0 +27,GCF_001422185.1.RAST.fbamodel,GCF_001421805.1.RAST.fbamodel,R2A_M,45.215,54.871,58.092,92.105% (35/38),74.468% (35/47),15,1 (0),2 (0),70.213%,68.421%,0.58042,0.64239,0.52936,competitive,0.21354,0.70211 +28,GCF_001422185.1.RAST.fbamodel,GCF_001421235.1_Leaf202.fna_genome.fbamodel,R2A_M,45.215,49.226,69.962,84.211% (32/38),66.667% (32/48),15,1 (1),5 (5),75.0%,21.053%,0.74079,0.77365,0.71062,competitive,0.088701,0.0 +29,GCF_001422185.1.RAST.fbamodel,GCF_001421165.1.RAST.fbamodel,R2A_M,45.215,44.903,63.188,81.579% (31/38),75.610% (31/41),17,1 (0),2 (0),70.732%,63.158%,0.70117,0.69875,0.70361,competitive,0.006964,0.30959 +30,GCF_001422185.1.RAST.fbamodel,GCF_001423105.1.RAST.fbamodel,R2A_M,45.215,0.0,87.414,84.211% (32/38),80.000% (32/40),16,1 (1),2 (2),70.0%,60.526%,1.9333,0.96664,,,,0.31396 +31,GCF_001422185.1.RAST.fbamodel,GCF_001426165.RAST.fbamodel,R2A_M,45.215,57.704,64.681,92.105% (35/38),79.545% (35/44),15,4 (1),2 (1),65.909%,68.421%,0.62846,0.71525,0.56046,competitive,0.27619,0.30953 +32,GCF_001422185.1.RAST.fbamodel,GCF_001423665.1.RAST.fbamodel,R2A_M,45.215,58.247,81.229,86.842% (33/38),76.744% (33/43),16,1 (1),3 (2),69.767%,60.526%,0.78511,0.89824,0.69728,competitive,0.2882,0.30901 +33,GCF_001422185.1.RAST.fbamodel,GCF_001424595.1.RAST.fbamodel,R2A_M,45.215,51.341,60.7,84.211% (32/38),71.111% (32/45),14,1 (0),3 (1),68.889%,63.158%,0.62865,0.67123,0.59115,competitive,0.13547,0.31512 +34,GCF_001421805.1.RAST.fbamodel,GCF_001421235.1_Leaf202.fna_genome.fbamodel,R2A_M,54.871,49.226,85.141,78.723% (37/47),77.083% (37/48),19,0 (0),4 (3),75.0%,25.532%,0.8179,0.77584,0.8648,competitive,0.11467,0.0 +35,GCF_001421805.1.RAST.fbamodel,GCF_001421165.1.RAST.fbamodel,R2A_M,54.871,44.903,71.412,76.596% (36/47),87.805% (36/41),19,3 (3),4 (0),70.732%,65.957%,0.71574,0.65073,0.79519,competitive,0.22199,0.31434 +36,GCF_001421805.1.RAST.fbamodel,GCF_001423105.1.RAST.fbamodel,R2A_M,54.871,0.0,98.741,74.468% (35/47),87.500% (35/40),20,1 (0),1 (1),70.0%,55.319%,1.7995,0.89976,,,,0.31926 +37,GCF_001421805.1.RAST.fbamodel,GCF_001426165.RAST.fbamodel,R2A_M,54.871,57.704,77.358,82.979% (39/47),88.636% (39/44),19,4 (2),2 (0),65.909%,70.213%,0.68718,0.70491,0.67031,competitive,0.051628,0.32014 +38,GCF_001421805.1.RAST.fbamodel,GCF_001423665.1.RAST.fbamodel,R2A_M,54.871,58.247,101.57,76.596% (36/47),83.721% (36/43),19,3 (2),4 (4),69.767%,63.83%,0.89795,0.92557,0.87193,amensalism,0.061523,0.31846 +39,GCF_001421805.1.RAST.fbamodel,GCF_001424595.1.RAST.fbamodel,R2A_M,54.871,51.341,74.059,76.596% (36/47),80.000% (36/45),16,2 (1),4 (1),68.889%,65.957%,0.69728,0.67485,0.72125,competitive,0.068756,0.32181 +40,GCF_001421235.1_Leaf202.fna_genome.fbamodel,GCF_001421165.1.RAST.fbamodel,R2A_M,49.226,44.903,70.18,64.583% (31/48),75.610% (31/41),16,4 (3),1 (1),26.829%,70.833%,0.74558,0.71284,0.78147,competitive,0.096283,0.0 +41,GCF_001421235.1_Leaf202.fna_genome.fbamodel,GCF_001423105.1.RAST.fbamodel,R2A_M,49.226,0.0,82.046,68.750% (33/48),82.500% (33/40),12,4 (1),0 (0),22.5%,64.583%,1.6667,0.83336,,,,0.0 +42,GCF_001421235.1_Leaf202.fna_genome.fbamodel,GCF_001426165.RAST.fbamodel,R2A_M,49.226,57.704,95.129,66.667% (32/48),72.727% (32/44),18,7 (4),0 (0),20.455%,75.0%,0.88964,0.96624,0.82429,amensalism,0.17222,0.0 +43,GCF_001421235.1_Leaf202.fna_genome.fbamodel,GCF_001423665.1.RAST.fbamodel,R2A_M,49.226,58.247,89.509,68.750% (33/48),76.744% (33/43),15,2 (2),1 (0),25.581%,68.75%,0.83286,0.90916,0.76836,amensalism,0.18325,0.0 +44,GCF_001421235.1_Leaf202.fna_genome.fbamodel,GCF_001424595.1.RAST.fbamodel,R2A_M,49.226,51.341,82.202,64.583% (31/48),68.889% (31/45),14,5 (2),0 (0),24.444%,72.917%,0.81739,0.83495,0.80056,competitive,0.042959,0.0 +45,GCF_001421165.1.RAST.fbamodel,GCF_001423105.1.RAST.fbamodel,R2A_M,44.903,0.0,0.0,85.366% (35/41),87.500% (35/40),19,,,67.5%,65.854%,0.0,0.0,,,,0.72642 +46,GCF_001421165.1.RAST.fbamodel,GCF_001426165.RAST.fbamodel,R2A_M,44.903,57.704,69.139,85.366% (35/41),79.545% (35/44),21,0 (0),4 (3),63.636%,75.61%,0.67383,0.76987,0.59909,competitive,0.28508,0.44533 +47,GCF_001421165.1.RAST.fbamodel,GCF_001423665.1.RAST.fbamodel,R2A_M,44.903,58.247,77.23,87.805% (36/41),83.721% (36/43),18,0 (0),3 (3),65.116%,68.293%,0.74872,0.85997,0.66296,competitive,0.29717,0.7819 +48,GCF_001421165.1.RAST.fbamodel,GCF_001424595.1.RAST.fbamodel,R2A_M,44.903,51.341,67.706,87.805% (36/41),80.000% (36/45),17,0 (0),3 (3),66.667%,73.171%,0.70348,0.75392,0.65938,competitive,0.14338,0.6918 +49,GCF_001423105.1.RAST.fbamodel,GCF_001426165.RAST.fbamodel,R2A_M,0.0,57.704,80.191,92.500% (37/40),84.091% (37/44),19,3 (2),0 (0),61.364%,72.5%,1.3897,,0.69485,,,0.44941 +50,GCF_001423105.1.RAST.fbamodel,GCF_001423665.1.RAST.fbamodel,R2A_M,0.0,58.247,0.0,92.500% (37/40),86.047% (37/43),16,,,62.791%,65.0%,0.0,,0.0,,,0.73411 +51,GCF_001423105.1.RAST.fbamodel,GCF_001424595.1.RAST.fbamodel,R2A_M,0.0,51.341,0.0,92.500% (37/40),82.222% (37/45),15,,,64.444%,70.0%,0.0,,0.0,,,0.70353 +52,GCF_001426165.RAST.fbamodel,GCF_001423665.1.RAST.fbamodel,R2A_M,57.704,58.247,75.719,86.364% (38/44),88.372% (38/43),18,2 (2),0 (0),69.767%,61.364%,0.65303,0.6561,0.64999,competitive,0.0094091,0.44441 +53,GCF_001426165.RAST.fbamodel,GCF_001424595.1.RAST.fbamodel,R2A_M,57.704,51.341,61.254,88.636% (39/44),86.667% (39/45),17,4 (1),1 (0),68.889%,63.636%,0.56173,0.53076,0.59654,competitive,0.12393,0.44873 +54,GCF_001423665.1.RAST.fbamodel,GCF_001424595.1.RAST.fbamodel,R2A_M,58.247,51.341,78.647,86.047% (37/43),82.222% (37/45),14,1 (0),2 (2),64.444%,67.442%,0.71767,0.67512,0.76593,competitive,0.13451,0.69979 diff --git a/examples/Community Modeling/smetana/commscores_report.html b/examples/Community Modeling/smetana/commscores_report.html index 8b56dacc..95414f91 100644 --- a/examples/Community Modeling/smetana/commscores_report.html +++ b/examples/Community Modeling/smetana/commscores_report.html @@ -15,7 +15,7 @@ + +

+ Blank cells signify scores that failed to simulate in the given conditions. + The biomass yields are expressed in [gm/hr*(gm CDW)] +

+ + + + - - - + + + + + - + + + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - + + + + + + + + + - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
model1 model2 mediamodel1 growthmodel2 growthcommunity growth MRO_model1 MRO_model2 CIPMIP_model1MIP_model2PCMIP_model1 (costless)MIP_model2 (costless) BSS_model1 BSS_model2PC_commPC_model1PC_model2 BIT GYDFCFS
Community_index
0Pseudomonas_sp._GM17_2511231006.fna.RAST.fbamodelVariovorax_sp._CF313_2513020051.fna.RAST.fbamodelR2A_edition_0030.79487 (31/39)0.93939 (31/33)269 (0)8 (3)0.7634880.6410260.636364mutualism0.472950.42291GCF_001421425.1.RAST.fbamodelGCF_001423785.1.RAST.fbamodelR2A_M134.3868.376136.7572.549% (37/51)82.222% (37/45)2415 (3)4 (2)73.333%66.667%1.20251.04611.414commensalism0.351720.25651
1Pseudomonas_sp._GM17_2511231006.fna.RAST.fbamodelSphingobium_sp._AP49_2512564014.fna.RAST.fbamodelR2A_edition_0030.84615 (33/39)0.84615 (33/39)GCF_001421425.1.RAST.fbamodelGCF_001423565.1_Leaf145.fna_genome.fbamodelR2A_M65.36548.13596.2764.706% (33/51)66.000% (33/50)211 (0)7 (3)78.0%23.529%0.850520.73641.0065amensalism0.366810.0
2GCF_001421425.1.RAST.fbamodelGCF_001422185.1.RAST.fbamodelR2A_M65.365120.25113.6568.627% (35/51)92.105% (35/38)259 (3)3 (0)71.053%68.627%1.02770.869331.2567parasitism0.445650.34021
3GCF_001421425.1.RAST.fbamodelGCF_001421805.1.RAST.fbamodelR2A_M65.36586.809136.4570.588% (36/51)76.596% (36/47)248 (3)2 (0)72.34%68.627%1.13481.04371.2434commensalism0.191260.34713
4GCF_001421425.1.RAST.fbamodelGCF_001421235.1_Leaf202.fna_genome.fbamodelR2A_M65.36549.60499.20864.706% (33/51)68.750% (33/48)221 (1)7 (5)77.083%19.608%0.865760.758881.0077amensalism0.327860.0
5GCF_001421425.1.RAST.fbamodelGCF_001421165.1.RAST.fbamodelR2A_M65.36551.06992.92864.706% (33/51)80.488% (33/41)2411 (3)1 (1)78.049%66.667%0.842740.710831.0348amensalism0.455710.25436
6GCF_001421425.1.RAST.fbamodelGCF_001423105.1.RAST.fbamodelR2A_M65.36559.161118.3268.627% (35/51)87.500% (35/40)2111 (2)5 (2)75.0%60.784%1.81020.905090.25368
7GCF_001421425.1.RAST.fbamodelGCF_001426165.RAST.fbamodelR2A_M65.36592.093138.074.510% (38/51)86.364% (38/44)2511 (3)1 (1)70.455%70.588%1.12131.05561.1958commensalism0.132780.29827
8GCF_001421425.1.RAST.fbamodelGCF_001423665.1.RAST.fbamodelR2A_M65.36563.018126.0466.667% (34/51)79.070% (34/43)239 (4)4 (1)72.093%64.706%1.01960.964081.0819neutral0.122220.25098
9GCF_001421425.1.RAST.fbamodelGCF_001424595.1.RAST.fbamodelR2A_M65.36577.067116.768.627% (35/51)77.778% (35/45)2511 (3)3 (1)71.111%68.627%0.999960.892691.1365parasitism0.273170.25079
10GCF_001423785.1.RAST.fbamodelGCF_001423565.1_Leaf145.fna_genome.fbamodelR2A_M48.35747.82375.23375.556% (34/45)68.000% (34/50) 178 (2)0 (0)5 (4)76.0%33.333%0.78220.777890.78657competitive0.0111650.0
11GCF_001423785.1.RAST.fbamodelGCF_001422185.1.RAST.fbamodelR2A_M48.35745.21557.53275.556% (34/45)89.474% (34/38)142 (1)4 (2)65.789%71.111%0.614840.594860.6362competitive0.069490.30249
12GCF_001423785.1.RAST.fbamodelGCF_001421805.1.RAST.fbamodelR2A_M48.35754.87169.4880.000% (36/45)76.596% (36/47)172 (0)2 (1)68.085%71.111%0.673070.71840.63313competitive0.134690.30467
13GCF_001423785.1.RAST.fbamodelGCF_001421235.1_Leaf202.fna_genome.fbamodelR2A_M48.35749.22677.32871.111% (32/45)66.667% (32/48)160 (0)5 (3)75.0%28.889%0.792430.799550.78544competitive0.0179630.0
14GCF_001423785.1.RAST.fbamodelGCF_001421165.1.RAST.fbamodelR2A_M48.35744.90366.83682.222% (37/45)90.244% (37/41)181 (1)1 (1)75.61%66.667%0.716660.691060.74423competitive0.0769380.58231
15GCF_001423785.1.RAST.fbamodelGCF_001423105.1.RAST.fbamodelR2A_M48.3570.00.084.444% (38/45)95.000% (38/40)1770.0%66.667%0.00.00.59298
16GCF_001423785.1.RAST.fbamodelGCF_001426165.RAST.fbamodelR2A_M48.35757.70460.99386.667% (39/45)88.636% (39/44)163 (0)2 (1)63.636%71.111%0.575070.630650.5285competitive0.193270.46372
17GCF_001423785.1.RAST.fbamodelGCF_001423665.1.RAST.fbamodelR2A_M48.35758.24774.89380.000% (36/45)83.721% (36/43)141 (1)3 (2)69.767%64.444%0.702540.774370.6429competitive0.20450.59201
18GCF_001423785.1.RAST.fbamodelGCF_001424595.1.RAST.fbamodelR2A_M48.35751.34157.92588.889% (40/45)88.889% (40/45)142 (1)0 (0)66.667%68.889%0.581010.598930.56413competitive0.0616930.58008
19GCF_001423565.1_Leaf145.fna_genome.fbamodelGCF_001422185.1.RAST.fbamodelR2A_M47.82345.21568.73262.000% (31/50)81.579% (31/38)14 4 (3)1.3792650.6410260.692308mutualism0.162830.304201 (0)26.316%78.0%0.738750.718610.76005competitive0.057680.0
2Variovorax_sp._CF313_2513020051.fna.RAST.fbamodelSphingobium_sp._AP49_2512564014.fna.RAST.fbamodelR2A_edition_0030.87879 (29/33)0.74359 (29/39)20GCF_001423565.1_Leaf145.fna_genome.fbamodelGCF_001421805.1.RAST.fbamodelR2A_M47.82354.87182.27378.000% (39/50)82.979% (39/47)184 (3)0 (0)29.787%78.0%0.801150.860180.7497competitive0.147360.0
21GCF_001423565.1_Leaf145.fna_genome.fbamodelGCF_001421235.1_Leaf202.fna_genome.fbamodelR2A_M47.82349.22668.492.000% (46/50)95.833% (46/48)90 (0)1 (1)33.333%34.0%0.704790.715130.69475competitive0.0293290.0000
22GCF_001423565.1_Leaf145.fna_genome.fbamodelGCF_001421165.1.RAST.fbamodelR2A_M47.82344.90366.84964.000% (32/50)78.049% (32/41)164 (3)1 (1)31.707%72.0%0.720930.698920.74438competitive0.0650460.0
23GCF_001423565.1_Leaf145.fna_genome.fbamodelGCF_001423105.1.RAST.fbamodelR2A_M47.8230.079.02968.000% (34/50)85.000% (34/40) 133 (1)1 (1)27.5%66.0%1.65250.826260.0
24GCF_001423565.1_Leaf145.fna_genome.fbamodelGCF_001426165.RAST.fbamodelR2A_M47.82357.70493.49766.000% (33/50)75.000% (33/44)177 (4)0 (0)25.0%76.0%0.8860.977520.81015amensalism0.20660.0
25GCF_001423565.1_Leaf145.fna_genome.fbamodelGCF_001423665.1.RAST.fbamodelR2A_M47.82358.24787.06568.000% (34/50)79.070% (34/43)164 (4)0 (0)30.233%70.0%0.820820.910270.74738amensalism0.217950.0
26GCF_001423565.1_Leaf145.fna_genome.fbamodelGCF_001424595.1.RAST.fbamodelR2A_M47.82351.34179.78566.000% (33/50)73.333% (33/45)145 (3)1 (1)28.889%74.0%0.804580.834170.77702competitive0.0735470.0
27GCF_001422185.1.RAST.fbamodelGCF_001421805.1.RAST.fbamodelR2A_M45.21554.87158.09292.105% (35/38)74.468% (35/47)151 (0)2 (0)70.213%68.421%0.580420.642390.52936competitive0.213540.70211
28GCF_001422185.1.RAST.fbamodelGCF_001421235.1_Leaf202.fna_genome.fbamodelR2A_M45.21549.22669.96284.211% (32/38)66.667% (32/48)151 (1)5 (5)75.0%21.053%0.740790.773650.71062competitive0.0887010.0
29GCF_001422185.1.RAST.fbamodelGCF_001421165.1.RAST.fbamodelR2A_M45.21544.90363.18881.579% (31/38)75.610% (31/41)171 (0)2 (0)70.732%63.158%0.701170.698750.70361competitive0.0069640.30959
30GCF_001422185.1.RAST.fbamodelGCF_001423105.1.RAST.fbamodelR2A_M45.2150.087.41484.211% (32/38)80.000% (32/40)161 (1)2 (2)70.0%60.526%1.93330.966640.31396
31GCF_001422185.1.RAST.fbamodelGCF_001426165.RAST.fbamodelR2A_M45.21557.70464.68192.105% (35/38)79.545% (35/44)154 (1)2 (1)65.909%68.421%0.628460.715250.56046competitive0.276190.30953
32GCF_001422185.1.RAST.fbamodelGCF_001423665.1.RAST.fbamodelR2A_M45.21558.24781.22986.842% (33/38)76.744% (33/43)161 (1)3 (2)69.767%60.526%0.785110.898240.69728competitive0.28820.30901
33GCF_001422185.1.RAST.fbamodelGCF_001424595.1.RAST.fbamodelR2A_M45.21551.34160.784.211% (32/38)71.111% (32/45)141 (0)3 (1)68.889%63.158%0.628650.671230.59115competitive0.135470.31512
34GCF_001421805.1.RAST.fbamodelGCF_001421235.1_Leaf202.fna_genome.fbamodelR2A_M54.87149.22685.14178.723% (37/47)77.083% (37/48)190 (0)4 (3)75.0%25.532%0.81790.775840.8648competitive0.114670.0
35GCF_001421805.1.RAST.fbamodelGCF_001421165.1.RAST.fbamodelR2A_M54.87144.90371.41276.596% (36/47)87.805% (36/41)193 (3)4 (0)70.732%65.957%0.715740.650730.79519competitive0.221990.31434
36GCF_001421805.1.RAST.fbamodelGCF_001423105.1.RAST.fbamodelR2A_M54.8710.098.74174.468% (35/47)87.500% (35/40)201 (0)1 (1)70.0%55.319%1.79950.899760.31926
37GCF_001421805.1.RAST.fbamodelGCF_001426165.RAST.fbamodelR2A_M54.87157.70477.35882.979% (39/47)88.636% (39/44)194 (2)2 (0)65.909%70.213%0.687180.704910.67031competitive0.0516280.32014
38GCF_001421805.1.RAST.fbamodelGCF_001423665.1.RAST.fbamodelR2A_M54.87158.247101.5776.596% (36/47)83.721% (36/43)193 (2)4 (4)69.767%63.83%0.897950.925570.87193amensalism0.0615230.31846
39GCF_001421805.1.RAST.fbamodelGCF_001424595.1.RAST.fbamodelR2A_M54.87151.34174.05976.596% (36/47)80.000% (36/45)162 (1)4 (1)68.889%65.957%0.697280.674850.72125competitive0.0687560.32181
40GCF_001421235.1_Leaf202.fna_genome.fbamodelGCF_001421165.1.RAST.fbamodelR2A_M49.22644.90370.1864.583% (31/48)75.610% (31/41)164 (3)1 (1)26.829%70.833%0.745580.712840.78147competitive0.0962830.0
41GCF_001421235.1_Leaf202.fna_genome.fbamodelGCF_001423105.1.RAST.fbamodelR2A_M49.2260.082.04668.750% (33/48)82.500% (33/40)124 (1)0 (0)22.5%64.583%1.66670.833360.0
42GCF_001421235.1_Leaf202.fna_genome.fbamodelGCF_001426165.RAST.fbamodelR2A_M49.22657.70495.12966.667% (32/48)72.727% (32/44)187 (4)0 (0)20.455%75.0%0.889640.966240.82429amensalism0.172220.0
43GCF_001421235.1_Leaf202.fna_genome.fbamodelGCF_001423665.1.RAST.fbamodelR2A_M49.22658.24789.50968.750% (33/48)76.744% (33/43)15 2 (2)1 (0)25.581%68.75%0.832860.909160.76836amensalism0.183250.0
44GCF_001421235.1_Leaf202.fna_genome.fbamodelGCF_001424595.1.RAST.fbamodelR2A_M49.22651.34182.20264.583% (31/48)68.889% (31/45)14 5 (2)1.0849120.5757580.666667parasitism0.712790.350610 (0)24.444%72.917%0.817390.834950.80056competitive0.0429590.0
45GCF_001421165.1.RAST.fbamodelGCF_001423105.1.RAST.fbamodelR2A_M44.9030.00.085.366% (35/41)87.500% (35/40)1967.5%65.854%0.00.00.72642
46GCF_001421165.1.RAST.fbamodelGCF_001426165.RAST.fbamodelR2A_M44.90357.70469.13985.366% (35/41)79.545% (35/44)210 (0)4 (3)63.636%75.61%0.673830.769870.59909competitive0.285080.44533
47GCF_001421165.1.RAST.fbamodelGCF_001423665.1.RAST.fbamodelR2A_M44.90358.24777.2387.805% (36/41)83.721% (36/43)180 (0)3 (3)65.116%68.293%0.748720.859970.66296competitive0.297170.7819
48GCF_001421165.1.RAST.fbamodelGCF_001424595.1.RAST.fbamodelR2A_M44.90351.34167.70687.805% (36/41)80.000% (36/45)170 (0)3 (3)66.667%73.171%0.703480.753920.65938competitive0.143380.6918
49GCF_001423105.1.RAST.fbamodelGCF_001426165.RAST.fbamodelR2A_M0.057.70480.19192.500% (37/40)84.091% (37/44)193 (2)0 (0)61.364%72.5%1.38970.694850.44941
50GCF_001423105.1.RAST.fbamodelGCF_001423665.1.RAST.fbamodelR2A_M0.058.2470.092.500% (37/40)86.047% (37/43)1662.791%65.0%0.00.00.73411
51GCF_001423105.1.RAST.fbamodelGCF_001424595.1.RAST.fbamodelR2A_M0.051.3410.092.500% (37/40)82.222% (37/45)1564.444%70.0%0.00.00.70353
52GCF_001426165.RAST.fbamodelGCF_001423665.1.RAST.fbamodelR2A_M57.70458.24775.71986.364% (38/44)88.372% (38/43)182 (2)0 (0)69.767%61.364%0.653030.65610.64999competitive0.0094090.44441
53GCF_001426165.RAST.fbamodelGCF_001424595.1.RAST.fbamodelR2A_M57.70451.34161.25488.636% (39/44)86.667% (39/45)174 (1)1 (0)68.889%63.636%0.561730.530760.59654competitive0.123930.44873
54GCF_001423665.1.RAST.fbamodelGCF_001424595.1.RAST.fbamodelR2A_M58.24751.34178.64786.047% (37/43)82.222% (37/45)141 (0)2 (2)64.444%67.442%0.717670.675120.76593competitive0.134510.69979
- diff --git a/examples/Community Modeling/smetana/test_media.ipynb b/examples/Community Modeling/smetana/test_media.ipynb new file mode 100644 index 00000000..45444962 --- /dev/null +++ b/examples/Community Modeling/smetana/test_media.ipynb @@ -0,0 +1,132 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "id": "171fc38d-8425-4078-9dcb-a4ec68c548f7", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "modelseedpy 0.2.2\n", + "cobrakbase 0.3.1\n" + ] + } + ], + "source": [ + "import os\n", + "local_cobrakbase_path = os.path.join('C:', 'Users', 'Andrew Freiburger','Documents','Argonne','cobrakbase')\n", + "os.environ[\"HOME\"] = local_cobrakbase_path\n", + "\n", + "# import the KBase\n", + "import cobrakbase\n", + "# with open(\"/Users/afreiburger/Documents/kbase_token.txt\") as token_file:\n", + "with open(\"D:/Users/Andrew Freiburger/Documents/Argonne/kbase_token.txt\") as token_file:\n", + " kbase_api = cobrakbase.KBaseAPI(token_file.readline())\n", + " \n", + " \n", + "GCF_001424595 = kbase_api.get_from_ws(\"136582/820/1\") ; GCF_001421165 = kbase_api.get_from_ws(\"136582/723/1\") ; GCF_001421425 = kbase_api.get_from_ws(\"136582/517/1\") ; GCF_001421805 = kbase_api.get_from_ws(\"136582/435/1\")\n", + "GCF_001423105 = kbase_api.get_from_ws(\"136582/589/1\") ; GCF_001423785 = kbase_api.get_from_ws(\"136582/587/1\") ; GCF_001423665 = kbase_api.get_from_ws(\"136582/677/1\") ; GCF_001426165 = kbase_api.get_from_ws(\"136582/491/1\")\n", + "GCF_001422185 = kbase_api.get_from_ws(\"136582/423/1\")\n", + "MSmodels = [GCF_001424595, GCF_001421165, GCF_001421425, GCF_001421805, GCF_001423105, GCF_001423785, GCF_001423665, GCF_001426165, GCF_001422185]\n", + "\n", + "\n", + "%run ../../../modelseedpy/core/fbahelper.py\n", + "r2a_methanol_media = FBAHelper.convert_kbase_media(kbase_api.get_from_ws(\"152904/21/1\"))\n", + "r2a_media = FBAHelper.convert_kbase_media(kbase_api.get_from_ws(\"152904/16/1\"))\n", + "maltose_media = FBAHelper.convert_kbase_media(kbase_api.get_from_ws(\"152904/19/1\"))" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "304b9510-da71-4111-9fc5-9d2a24c763f3", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "GCF_001424595.1.RAST.fbamodel \n", + "==========\n", + "55.655361836658024\n", + "55.655361836657825\n", + "GCF_001421165.1.RAST.fbamodel \n", + "==========\n", + "39.88328207422094\n", + "39.88328207422042\n", + "GCF_001421425.1.RAST.fbamodel \n", + "==========\n", + "68.78009318533289\n", + "68.78009318533377\n", + "GCF_001421805.1.RAST.fbamodel \n", + "==========\n", + "69.50328019992826\n", + "69.50328019992773\n", + "GCF_001423105.1.RAST.fbamodel \n", + "==========\n", + "56.30383154214115\n", + "56.30383154214165\n", + "GCF_001423785.1.RAST.fbamodel \n", + "==========\n", + "52.96286966722575\n", + "52.96286966722611\n", + "GCF_001423665.1.RAST.fbamodel \n", + "==========\n", + "59.854145041051325\n", + "59.854145041048646\n", + "GCF_001426165.1.RAST.fbamodel \n", + "==========\n", + "57.87331259164922\n", + "57.873312591664146\n", + "GCF_001422185.1.RAST.fbamodel \n", + "==========\n", + "47.636865537845665\n", + "47.636865537828385\n" + ] + } + ], + "source": [ + "%run ../../../modelseedpy/core/msmodelutl.py\n", + "\n", + "for model in MSmodels:\n", + " print(model.id, \"\\n==========\")\n", + " msutil = MSModelUtil(model)\n", + " for medium in [r2a_methanol_media, r2a_media]:\n", + " msutil.add_medium(medium, 1000)\n", + " print(msutil.model.slim_optimize())" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "ce38c87e-6ce1-401a-bbc5-a07a5365115f", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.9.12" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/modelseedpy/__init__.py b/modelseedpy/__init__.py index 004fb44d..2c3590e5 100755 --- a/modelseedpy/__init__.py +++ b/modelseedpy/__init__.py @@ -40,7 +40,7 @@ from modelseedpy.core.exceptions import * from modelseedpy.community import ( - MSCommunity, CommunityMembers, MSCompatibility, MSKineticsFBA, MSCommScores, MSCommPhitting, + MSCommunity, CommunityMember, MSCompatibility, MSKineticsFBA, CommScores, CommPhitting, MSSteadyCom, build_from_species_models, phenotypes) from modelseedpy.biochem import ModelSEEDBiochem diff --git a/modelseedpy/biochem/modelseed_reaction.py b/modelseedpy/biochem/modelseed_reaction.py index a89800d3..36ca07b8 100755 --- a/modelseedpy/biochem/modelseed_reaction.py +++ b/modelseedpy/biochem/modelseed_reaction.py @@ -1,4 +1,3 @@ - # -*- coding: utf-8 -*- import math from modelseedpy.biochem.seed_object import ModelSEEDObject diff --git a/modelseedpy/community/__init__.py b/modelseedpy/community/__init__.py index e65aceb4..730495ac 100644 --- a/modelseedpy/community/__init__.py +++ b/modelseedpy/community/__init__.py @@ -5,10 +5,10 @@ # import pyximport; pyximport.install(language_level=3) # improve computational speed from modelseedpy.community.mscommunity import * -from modelseedpy.community.mscommscores import MSCommScores +from modelseedpy.community.commscores import CommScores from modelseedpy.community.datastandardization import * from modelseedpy.community.mssteadycom import MSSteadyCom -from modelseedpy.community.mscommphitting import MSCommPhitting +from modelseedpy.community.commphitting import CommPhitting from modelseedpy.community.mscompatibility import MSCompatibility from modelseedpy.community.commhelper import build_from_species_models, phenotypes from modelseedpy.community.mskineticsfba import MSKineticsFBA diff --git a/modelseedpy/community/mscommphitting.py b/modelseedpy/community/commphitting.py similarity index 98% rename from modelseedpy/community/mscommphitting.py rename to modelseedpy/community/commphitting.py index 99f03d83..3399a8f5 100644 --- a/modelseedpy/community/mscommphitting.py +++ b/modelseedpy/community/commphitting.py @@ -116,7 +116,7 @@ def _partition_coefs(initial_val, divisor): biomass_partition_coefs = [_partition_coefs(10, 10), _partition_coefs(2, 2), _partition_coefs(1, 3)] -class MSCommPhitting: +class CommPhitting: def __init__(self, msdb_path, community_members: dict=None, fluxes_df=None, data_df=None, carbon_conc=None, media_conc=None, experimental_metadata=None, base_media=None, solver: str = 'glpk', all_phenotypes=True, @@ -159,11 +159,11 @@ def fit_kcat(self, parameters: dict = None, mets_to_track: list = None, rel_fina requisite_biomass = requisite_biomass or self.requisite_biomass for index, coefs in enumerate(biomass_partition_coefs): # solve for growth rate constants with the previously solved biomasses - newSim = MSCommPhitting(self.msdb_path, None, self.fluxes_df, self.data_df, self.carbon_conc, - self.media_conc, self.experimental_metadata, None, self.solver, self.all_phenotypes, - self.data_paths, self.species_abundances, self.ignore_trials, self.ignore_timesteps, - self.species_identities_rows, self.significant_deviation, self.extract_zip_path, - True, self.consumed_mets) + newSim = CommPhitting(self.msdb_path, None, self.fluxes_df, self.data_df, self.carbon_conc, + self.media_conc, self.experimental_metadata, None, self.solver, self.all_phenotypes, + self.data_paths, self.species_abundances, self.ignore_trials, self.ignore_timesteps, + self.species_identities_rows, self.significant_deviation, self.extract_zip_path, + True, self.consumed_mets) newSim.define_problem(parameters, mets_to_track, rel_final_conc, zero_start, abs_final_conc, data_timesteps, export_zip_name, export_parameters, export_lp, kcat_primal, coefs, requisite_biomass) @@ -968,7 +968,7 @@ def load_model(self, mscomfit_json_path: str = None, zip_name: str = None, model def assign_values(param, var, next_dimension, kcat=True): dic = {var: {}} for dim1, dim2_list in next_dimension.items(): - if isinstance(dim2_list, dict): dic[var].update(MSCommPhitting.assign_values(param, dim1, dim2_list)) + if isinstance(dim2_list, dict): dic[var].update(CommPhitting.assign_values(param, dim1, dim2_list)) else: if kcat: dic[var][dim1] = param else: dic[var][dim1] = {dim2: param for dim2 in dim2_list} @@ -986,8 +986,8 @@ def _universalize(self, param, var, next_dimension=None, exclude=None, tsBin=Fal else: if species in next_dimension: next_dimension[species].update({pheno: self.time_ranges}) else: next_dimension[species] = {pheno: self.time_ranges} - if FBAHelper.isnumber(param): return MSCommPhitting.assign_values(param, var, next_dimension) - elif FBAHelper.isnumber(param[var]): return MSCommPhitting.assign_values(param[var], var, next_dimension) + if FBAHelper.isnumber(param): return CommPhitting.assign_values(param, var, next_dimension) + elif FBAHelper.isnumber(param[var]): return CommPhitting.assign_values(param[var], var, next_dimension) elif isinstance(param[var], dict): return {var: {dim1: {dim2: param[var][dim1] for dim2 in dim2_list} for dim1, dim2_list in next_dimension.items()}} @@ -1257,7 +1257,7 @@ def _change_obj(self): pass -class BIOLOGPhitting(MSCommPhitting): +class BIOLOGPhitting(CommPhitting): def __init__(self, carbon_conc, media_conc, biolog_df, fluxes_df, experimental_metadata, msdb_path, community_members): self.biolog_df = biolog_df; self.experimental_metadata = experimental_metadata @@ -1320,7 +1320,7 @@ def fitAll(self, parameters: dict = None, rel_final_conc: float = None, kcat_primal = None for coef_index, coefs in enumerate(biomass_partition_coefs): # solve for growth rate constants with the previously solved biomasses - new_simulation = MSCommPhitting(self.fluxes_df, self.carbon_conc, self.media_conc, + new_simulation = CommPhitting(self.fluxes_df, self.carbon_conc, self.media_conc, self.msdb_path, self.biolog_df.loc[exp_index,:], self.experimental_metadata) new_simulation.define_problem( diff --git a/modelseedpy/community/mscommscores.py b/modelseedpy/community/commscores.py similarity index 67% rename from modelseedpy/community/mscommscores.py rename to modelseedpy/community/commscores.py index 9639cca9..9ffe464d 100644 --- a/modelseedpy/community/mscommscores.py +++ b/modelseedpy/community/commscores.py @@ -1,21 +1,23 @@ +from modelseedpy.core.exceptions import ObjectiveError, ParameterError +from modelseedpy.community.commhelper import build_from_species_models from modelseedpy.community.mscompatibility import MSCompatibility from modelseedpy.core.msminimalmedia import MSMinimalMedia -from modelseedpy.community.commhelper import build_from_species_models from modelseedpy.community.mscommunity import MSCommunity +from modelseedpy.core.msmodelutl import MSModelUtil from modelseedpy.core.fbahelper import FBAHelper from modelseedpy.core.msgapfill import MSGapfill from itertools import combinations, permutations, chain from optlang import Variable, Constraint, Objective -from modelseedpy.core.exceptions import ObjectiveError, ParameterError from numpy import array, unique, ndarray, where, sort, array_split, nan -from modelseedpy.core.msmodelutl import MSModelUtil from collections import Counter from deepdiff import DeepDiff # (old, new) from typing import Iterable, Union from pprint import pprint from numpy.random import shuffle from multiprocess import current_process -from icecream import ic +from math import inf +import sigfig +# from icecream import ic import re # from math import prod @@ -80,7 +82,22 @@ def _get_media(media=None, com_model=None, model_s_=None, min_growth=None, envir return {"community_media":com_media, "members":members_media} -class MSCommScores: +def _sigfig_check(value, sigfigs, default): + if str(value) in ["inf", "nan"]: value = "" + if FBAHelper.isnumber(value): return sigfig.round(value, sigfigs) + else: return default + + + +def nanFilter(value, string=True): + if isinstance(value, str) or value is None: + if string: return value + else: return nan + if any([value < 0, value > 1e5]): return "" if string else nan + return value + + +class CommScores: def __init__(self, member_models, min_growth=0.1, n_solutions=100, environment=None, abstol=1e-3, media_dict=None, printing=True, raw_content=False, antismash_json_path:str=None, antismash_zip_path:str=None, minimal_media_method="minFlux"): @@ -113,7 +130,7 @@ def __init__(self, member_models, min_growth=0.1, n_solutions=100, environment=N min_growth, self.environment, True, n_solutions, printing) def all_scores(self, mp_score=True, kbase_obj=None, cobrakbase_path:str=None, - kbase_token_path:str=None, RAST_genomes:dict=None): + kbase_token_path:str=None, annotated_genomes:dict=None): mro = self.mro_score() mip = self.mip_score(interacting_media=self.media) mp = None if not mp_score else self.mp_score() @@ -121,14 +138,14 @@ def all_scores(self, mp_score=True, kbase_obj=None, cobrakbase_path:str=None, sc = None # self.sc_score() smetana = None # self.smetana_score() gyd = self.gyd_score() - fc = self.fc_score() if any([kbase_obj is not None, RAST_genomes != [], cobrakbase_path is not None + fs = self.fs_score() if any([kbase_obj is not None, annotated_genomes != [], cobrakbase_path is not None and kbase_token_path is not None]) else None return {"mro": mro, "mip": mip, "mp": mp, "mu": mu, "sc": sc, "smetana": smetana, - "gyd":gyd, "fc":fc} + "gyd":gyd, "fs":fs} def mro_score(self): - self.mro_val = MSCommScores.mro(self.models, self.media["members"], self.min_growth, - self.media, self.raw_content, self.environment, self.printing, True) + self.mro_val = CommScores.mro(self.models, self.media["members"], self.min_growth, + self.media, self.raw_content, self.environment, self.printing, True) if not self.printing: return self.mro_val if self.raw_content: for pair, (interaction, media) in self.mro_val.items(): @@ -145,15 +162,15 @@ def mro_score(self): def mip_score(self, interacting_media:dict=None, noninteracting_media:dict=None): interacting_media = interacting_media or self.media or None - diff, self.mip_val = MSCommScores.mip(self.models, self.community.model, self.min_growth, interacting_media, - noninteracting_media, self.environment, self.printing, True) + diff, self.mip_val = CommScores.mip(self.models, self.community.model, self.min_growth, interacting_media, + noninteracting_media, self.environment, self.printing, True) if not self.printing: return self.mip_val print(f"\nMIP score: {self.mip_val}\t\t\t{self.mip_val} required compound(s) can be sourced via syntrophy:") if self.raw_content: pprint(diff) return self.mip_val def gyd_score(self, coculture_growth=False): - self.gyd_val = MSCommScores.gyd(self.models, environment=self.environment, coculture_growth=coculture_growth) + self.gyd_val = CommScores.gyd(self.models, environment=self.environment, coculture_growth=coculture_growth) if not self.printing: return self.gyd growth_type = "monocultural" if not coculture_growth else "cocultural" for pair, score in self.gyd_val.items(): @@ -161,17 +178,17 @@ def gyd_score(self, coculture_growth=False): f" is {score} times greater than the growth of the slower member.") return self.gyd - def fc_score(self, kbase_obj=None, cobrakbase_path:str=None, kbase_token_path:str=None, RAST_genomes:dict=None): - self.fc_val = MSCommScores.fc(self.models, kbase_obj, cobrakbase_path, kbase_token_path, RAST_genomes) - if not self.printing: return self.fc - for pair, score in self.fc_val.items(): - print(f"\nFC Score: The similarity of RAST functional SSO ontology " + def fs_score(self, kbase_obj=None, cobrakbase_path:str=None, kbase_token_path:str=None, annotated_genomes:dict=None): + self.fs_val = CommScores.fs(self.models, kbase_obj, cobrakbase_path, kbase_token_path, annotated_genomes) + if not self.printing: return self.fs + for pair, score in self.fs_val.items(): + print(f"\nFS Score: The similarity of RAST functional SSO ontology " f"terms between the {pair} members is {score}.") - return self.fc + return self.fs def mp_score(self): print("executing MP") - self.mp_val = MSCommScores.mp(self.models, self.environment, self.community.model, None, self.abstol, self.printing) + self.mp_val = CommScores.mp(self.models, self.environment, self.community.model, None, self.abstol, self.printing) if not self.printing: return self.mp_val if self.raw_content: print("\n(MP) The possible contributions of each member in the member media include:\n") @@ -184,8 +201,8 @@ def mp_score(self): def mu_score(self): member_excreta = self.mp_score() if not hasattr(self, "mp_val") else self.mp_val - self.mu_val = MSCommScores.mu(self.models, self.environment, member_excreta, self.n_solutions, - self.abstol, True, self.printing) + self.mu_val = CommScores.mu(self.models, self.environment, member_excreta, self.n_solutions, + self.abstol, True, self.printing) if not self.printing: return self.mu_val print("\nMU score:\t\t\tThe fraction of solutions in which each member is the " "syntrophic receiver that contain a respective metabolite:\n") @@ -193,8 +210,8 @@ def mu_score(self): return self.mu_val def sc_score(self): - self.sc_val = MSCommScores.sc(self.models, self.community.model, self.min_growth, - self.n_solutions, self.abstol, True, self.printing) + self.sc_val = CommScores.sc(self.models, self.community.model, self.min_growth, + self.n_solutions, self.abstol, True, self.printing) if not self.printing: return self.sc_val print("\nSC score:\t\t\tThe fraction of community members who syntrophically contribute to each species:\n") pprint(self.sc_val) @@ -206,14 +223,14 @@ def smetana_score(self): if not hasattr(self, "mu_val"): self.mu_val = self.mu_score() if not hasattr(self, "mp_val"): self.mp_val = self.mp_score() - self.smetana = MSCommScores.smetana( + self.smetana = CommScores.smetana( self.models, self.community.model, self.min_growth, self.n_solutions, self.abstol, (self.sc_val, self.mu_val, self.mp_val), True, sc_coupling, self.printing) if self.printing: print("\nsmetana score:\n") ; pprint(self.smetana) return self.smetana def antiSMASH_scores(self, antismash_json_path=None): - self.antismash = MSCommScores.antiSMASH(antismash_json_path or self.antismash_json_path) + self.antismash = CommScores.antiSMASH(antismash_json_path or self.antismash_json_path) if not self.printing: return self.antismash if self.raw_content: print("\n(antismash) The biosynthetic_areas, BGCs, protein_annotations, clusterBlast, and " @@ -242,13 +259,13 @@ def antiSMASH_scores(self, antismash_json_path=None): ###### STATIC METHODS OF THE SMETANA SCORES, WHICH ARE APPLIED IN THE ABOVE CLASS OBJECT ###### @staticmethod - def _check_model(model_util, media, model_str): + def _check_model(model_util, media, model_str, skip_bad_media): default_media = model_util.model.medium if media is not None: model_util.add_medium(media) obj_val = model_util.model.slim_optimize() if obj_val == 0 or not FBAHelper.isnumber(obj_val): print(f"The {model_str} model input does not yield an operational model, and will therefore be gapfilled.") - return MSGapfill.gapfill(model_util.model, media) + # if not skip_bad_media: return MSGapfill.gapfill(model_util.model, media) model_util.add_medium(default_media) return model_util.model @@ -260,19 +277,28 @@ def _load(model, kbase_obj): return model, model_str @staticmethod - def calculate_scores(pairs, models_media=None, environments=None, RAST_genomes=None, lazy_load=False, + def _determine_growths(modelUtils): + return [util.model.slim_optimize() for util in modelUtils] + + + @staticmethod + def calculate_scores(pairs, models_media=None, environments=None, annotated_genomes=True, lazy_load=False, kbase_obj=None, cip_score=True, costless=True, skip_bad_media=False, anme_comm=False, print_progress=False): from pandas import Series - if isinstance(pairs, list): pairs, models_media, environments, RAST_genomes, lazy_load, kbase_obj = pairs + if isinstance(pairs, list): pairs, models_media, environments, annotated_genomes, lazy_load, kbase_obj = pairs series, mets = [], [] - environments = [environments] if not isinstance(environments, (list, set, tuple)) else environments + if not isinstance(environments, (list, tuple)): environments = [environments] + if isinstance(environments, (list, tuple)) and hasattr(environments[0], "name"): + environments = {m.name:FBAHelper.convert_kbase_media(m, 1000) for m in environments} + elif not isinstance(environments, dict): environments = {f"media{i}":m for i,m in enumerate(environments)} pid = current_process().name model_utils = {} count = 0 for model1, models in pairs.items(): - if lazy_load: model1, model1_str = MSCommScores._load(model1, kbase_obj) + if model1.id == "": model1.id = "model1" + if lazy_load: model1, model1_str = CommScores._load(model1, kbase_obj) else: model1_str = model1.id if model1.id not in models_media: models_media[model1.id] = {"media": _get_media(model_s_=model1, skip_bad_media=skip_bad_media)} @@ -280,89 +306,123 @@ def calculate_scores(pairs, models_media=None, environments=None, RAST_genomes=N if model1.id not in model_utils: model_utils[model1.id] = MSModelUtil(model1) # print(pid, model1) for model_index, model2 in enumerate(models): - # print(model2) - if lazy_load: model2, model2_str = MSCommScores._load(model2, kbase_obj) + if model2.id == "": model2.id = "model2" + if lazy_load: model2, model2_str = CommScores._load(model2, kbase_obj) else: model2_str = model2.id if model2.id not in models_media: models_media[model2.id] = {"media": _get_media(model_s_=model2, skip_bad_media=skip_bad_media)} if models_media[model2.id] is None: continue if model2.id not in model_utils: model_utils[model2.id] = MSModelUtil(model2) - # print(model2) - grouping = [model1, model2] + grouping = [model1, model2] ; grouping_utils = [model_utils[model1.id], model_utils[model2.id]] + modelIDs = [model.id for model in grouping] comm_model = build_from_species_models(grouping) - community = MSCommunity(comm_model, grouping) + community = MSCommunity(comm_model, ids=modelIDs) comm_sol = comm_model.optimize() - modelIDs = [model.id for model in grouping] print(f"{pid}~~{count}\t{modelIDs}") - for envIndex, environ in enumerate(environments): - if print_progress: print(f"\tEnvironment{envIndex}: {environ}", end="\t") + for environName, environ in environments.items(): + if print_progress: print(f"\tEnvironment\t{environName}", end="\t") if not anme_comm: - model1 = MSCommScores._check_model(model_utils[model1.id], environ, model1_str) - model2 = MSCommScores._check_model(model_utils[model2.id], environ, model2_str) + model1 = CommScores._check_model(model_utils[model1.id], environ, model1_str, skip_bad_media) + model2 = CommScores._check_model(model_utils[model2.id], environ, model2_str, skip_bad_media) # initiate the KBase output - kbase_dic = {f"model{index+1}": modelID for index, modelID in enumerate(modelIDs)} - kbase_dic["media"] = f"media{envIndex}" if not hasattr(environ, "name") else environ.name - if "None" == kbase_dic["media"][:4]: kbase_dic["media"] = "Complete" + report_dic = {f"model{i+1}": modelID for i,modelID in enumerate(modelIDs)} + g1, g2, comm = CommScores._determine_growths([model_utils[model1.id], model_utils[model2.id], community.util]) + g1, g2, comm = _sigfig_check(g1, 5, ""), _sigfig_check(g2, 5, ""), _sigfig_check(comm, 5, "") + report_dic.update({"media": environName, "model1 growth": g1, "model2 growth": g2, "community growth": comm}) + coculture_growths = {mem.id: comm_sol.fluxes[mem.primary_biomass.id] for mem in community.members} + report_dic.update({f"coculture growth model{modelIDs.index(memID)}": growth for memID, growth in coculture_growths.items()}) # define the MRO content - mro_values = MSCommScores.mro(grouping, models_media, raw_content=True, environment=environ) - kbase_dic.update({f"MRO_model{modelIDs.index(models_string.split('--')[0])+1}": - f"{len(intersection)/len(memMedia):.5f} ({len(intersection)}/{len(memMedia)})" + mro_values = CommScores.mro(grouping, models_media, raw_content=True, environment=environ) + report_dic.update({f"MRO_model{modelIDs.index(models_string.split('--')[0])+1}": + f"{100*len(intersection)/len(memMedia):.3f}% ({len(intersection)}/{len(memMedia)})" for models_string, (intersection, memMedia) in mro_values.items()}) - mets.append({"mro_mets": list(mro_values.values())}) + mets.append({"MRO metabolites": list(mro_values.values())[0][0]}) if print_progress: print("MRO done", end="\t") # define the CIP content if cip_score: - cip_values = MSCommScores.cip(modelutils=[model_utils[mem.id] for mem in grouping]) - kbase_dic.update({"CIP": cip_values[1]}) + cip_values = CommScores.cip(modelutils=[model_utils[mem.id] for mem in grouping]) + report_dic.update({"CIP": cip_values[1]}) + mets[-1].update({"CIP metabolites": list(cip_values[0])}) if print_progress: print("CIP done", end="\t") # define the MIP content - mip_values = MSCommScores.mip(grouping, comm_model, environment=environ, compatibilized=True, - costless=costless, multi_output=costless) - kbase_dic.update({f"MIP_model{modelIDs.index(models_name)+1}": str(len(received)) - for models_name, received in mip_values[0].items()}) - mets.append({"mip_mets": mip_values[0]}) - if costless: - for models_name, received in mip_values[1].items(): - kbase_dic[f"MIP_model{modelIDs.index(models_name)+1} (costless)"] = kbase_dic[ - f"MIP_model{modelIDs.index(models_name)+1}"] + f" ({len(received)})" - del kbase_dic[f"MIP_model{modelIDs.index(models_name)+1}"] - if print_progress: print("costless_MIP done", end="\t") + mip_values = CommScores.mip(grouping, comm_model, 0.1, None, None, environ, print_progress, True, + costless, costless, skip_bad_media) + # print(mip_values) + if mip_values is not None: + report_dic.update({f"MIP_model{modelIDs.index(models_name)+1}": str(len(received)) + for models_name, received in mip_values[0].items()}) + mets[-1].update({"MIP model1 metabolites": list(mip_values[0].values())[0], + "MIP model2 metabolites": list(mip_values[0].values())[1]}) + if costless: + for models_name, received in mip_values[1].items(): + report_dic[f"MIP_model{modelIDs.index(models_name)+1} (costless)"] = report_dic[ + f"MIP_model{modelIDs.index(models_name)+1}"] + f" ({len(received)})" + del report_dic[f"MIP_model{modelIDs.index(models_name)+1}"] + if print_progress: print("costless_MIP done", end="\t") + else: + report_dic.update({f"MIP_model1 (costless)": "", f"MIP_model2 (costless)": ""}) + mets[-1].update({"MIP model1 metabolites": [None], "MIP model2 metabolites": [None]}) if print_progress: print("MIP done", end="\t") - bss_values = MSCommScores.bss(None, [model_utils[model1.id], model_utils[model2.id]], - environments, models_media, anme_comm) - kbase_dic.update({f"BSS_model{modelIDs.index(name.split(' invading ')[0])+1}": f"{val:.5f}" - for name, val in bss_values.items()}) + # define the BSS content + bss_values = CommScores.bss(grouping, grouping_utils, environments, models_media, skip_bad_media) + report_dic.update({f"BSS_model{modelIDs.index(name.split(' supporting ')[0])+1}": + f"{_sigfig_check(100*val, 5, '')}%" for name, (mets, val) in bss_values.items()}) + mets[-1].update({"BSS model1 metabolites": [met_set for met_set, val in bss_values.values()][0], + "BSS model2 metabolites": [met_set for met_set, val in bss_values.values()][1]}) + # mets[-1].update({"bss_mets": list(bss_values[0].values())}) if print_progress: print("BSS done", end="\t") - kbase_dic.update({"BIT": MSCommScores.bit(grouping, comm_model, comm_sol=comm_sol, community=community)}) - if print_progress: print("BIT done", end="\t") - kbase_dic.update({"PC": f"{MSCommScores.pc(grouping, comm_model, comm_sol, community=community)[0]:.5f}"}) - if print_progress: print("PC done", end="\t") - # determine the growth diff content - kbase_dic.update({"GYD": f"""{list(MSCommScores.gyd( - grouping, environment=environ, community=community, anme_comm=anme_comm).values())[0]:.5f}"""}) - if print_progress: print("GYD done\t\t", end="\t" if RAST_genomes else "\n") - # determine the RAST Functional Complementarity content - if kbase_obj is not None and RAST_genomes and not anme_comm: - kbase_dic.update({"FC": f"""{list(MSCommScores.fc( - grouping, kbase_obj, RAST_genomes=RAST_genomes).values())[0]:.5f}"""}) - if print_progress: print("FC done\t\t") + # define the PC content + pc_values = CommScores.pc(grouping, grouping_utils, comm_model, None, comm_sol, environ, True, community) + report_dic.update({"PC_comm": _sigfig_check(pc_values[0], 5, ""), + "PC_model1": _sigfig_check(list(pc_values[1].values())[0], 5, ""), + "PC_model2": _sigfig_check(list(pc_values[1].values())[1], 5, ""), + "BIT": pc_values[3]}) + if print_progress: print("PC done\tBIT done", end="\t") + # print([mem.slim_optimize() for mem in grouping]) + # define the GYD content + gyd1, gyd2, g1, g2 = list(CommScores.gyd(grouping, grouping_utils, environ, False, community, anme_comm).values())[0] + report_dic.update({"GYD1": _sigfig_check(gyd1, 5, ""), "GYD2": _sigfig_check(gyd2, 5, "")}) + if print_progress: print("GYD done\t\t", end="\t" if annotated_genomes else "\n") + # define the FS content + if kbase_obj is not None and annotated_genomes and not anme_comm: + fs_values = list(CommScores.fs(grouping, kbase_obj, annotated_genomes=annotated_genomes).values())[0] + print(len(fs_values[0]) if fs_values[0] is not None else "NaN", fs_values[1]) + report_dic.update({"FS": sigfig.round(fs_values[1], 5)}) + if fs_values is not None: mets[-1].update({"FS features": fs_values[0]}) + if print_progress: print("FS done\t\t") # return a pandas Series, which can be easily aggregated with other results into a DataFrame - series.append(Series(kbase_dic)) + series.append(Series(report_dic)) count += 1 return series, mets @staticmethod - def kbase_output(all_models:iter=None, pairs:dict=None, mem_media:dict=None, pair_limit:int=None, - exclude_pairs:list=None, kbase_obj=None, directional_pairs=False, - RAST_genomes:dict=True, # True triggers internal acquisition of the genomes, where None skips - see_media=True, environments:iter=None, # a collection of environment dicts or KBase media objects - pool_size:int=None, cip_score=True, costless=True, skip_bad_media=False, anmne_comm=False): + def html_report(df, mets, export_html_path="commscores_report.html", msdb_path=None): + from modelseedpy.core.report import commscores_report + return commscores_report(df, mets, export_html_path, msdb_path) + + @staticmethod + def report_generation(all_models:iter=None, # a list of distinct lists is provided for specifying exclusive groups + pairs:dict=None, mem_media:dict=None, pair_limit:int=None, + exclude_pairs:list=None, kbase_obj=None, annotated_genomes:dict=True, # True triggers internal acquisition of the genomes, where None skips + see_media=True, environments:iter=None, # a collection of environment dicts or KBase media objects + pool_size:int=None, cip_score=True, costless=True, skip_bad_media=False, anme_comm=False, + print_progress=False): from pandas import concat - all_models = list(set(all_models)) if pairs: model_pairs = unique([{model1, model2} for model1, models in pairs.items() for model2 in models]) elif all_models is not None: - model_pairs = array(list(permutations(all_models, 2) if directional_pairs else combinations(all_models, 2))) + if not isinstance(all_models[0], list): + all_models = list(set(all_models)) ; model_pairs = array(list(combinations(all_models, 2))) + else: + model_pairs = [] + for models1, models2 in combinations(all_models, 2): + models1 = set(models1) ; models2 = set(models2) + if len(models1) > len(models2): larger_list = models1 ; smaller_list = models2 + else: larger_list = models2 ; smaller_list = models1 + model_pairs.append([list(zip(combin, smaller_list)) for combin in permutations(larger_list, len(smaller_list))]) + # flatten the assembled pairs and filter duplicates + model_pairs = array([x for x in set(tuple(x) for x in [i for y in list(chain.from_iterable(model_pairs)) for i in y])]) + all_models = list(chain.from_iterable(all_models)) if pair_limit is not None: shuffle(model_pairs) new_pairs = [] @@ -374,8 +434,13 @@ def kbase_output(all_models:iter=None, pairs:dict=None, mem_media:dict=None, pai pairs = {first: model_pairs[where(model_pairs[:, 0] == first)][:, 1] for first in model_pairs[:, 0]} else: raise ValueError("Either < all_models > or < pairs > must be defined to simulate interactions.") if not all_models: all_models = list(chain(*[list(values) for values in pairs.values()])) + list(pairs.keys()) - lazy_load = isinstance(all_models[0], (list,set,tuple)) + lazy_load = len(model_pairs) > 10000 # all_models[0], (list,set,tuple)) if lazy_load and not kbase_obj: ValueError("The < kbase_obj > argument must be provided to lazy load models.") + new_models = [] + for index, model in enumerate(all_models): + if model.id == "": model.id = f"model_index{index}" + new_models.append(model) + all_models = new_models[:] if not mem_media: models_media = _get_media(model_s_=all_models, skip_bad_media=skip_bad_media) else: models_media = mem_media.copy() @@ -388,58 +453,65 @@ def kbase_output(all_models:iter=None, pairs:dict=None, mem_media:dict=None, pai if missing_models != set(): print(f"Media of the {missing_modelID} models are not defined, and will be calculated separately.") models_media.update(_get_media(model_s_=missing_models), skip_bad_media=skip_bad_media) - if see_media and not mem_media: print(f"The minimal media of all members:\n{models_media}") + if see_media: print(f"The minimal media of all members:\n{models_media}") print(f"\nExamining the {len(list(model_pairs))} model pairs") if pool_size is not None: from datetime import datetime ; from multiprocess import Pool print(f"Loading {int(pool_size)} workers and computing the scores", datetime.now()) - pool = Pool(int(pool_size))#.map(calculate_scores, [{k: v} for k,v in pairs.items()]) - args = [[dict([pair]), models_media, environments, RAST_genomes, lazy_load, kbase_obj] + pool = Pool(int(pool_size)) #.map(calculate_scores, [{k: v} for k,v in pairs.items()]) + args = [[dict([pair]), models_media, environments, annotated_genomes, lazy_load, kbase_obj] for pair in list(pairs.items())] - output = pool.map(MSCommScores.calculate_scores, args) + output = pool.map(CommScores.calculate_scores, args) series = chain.from_iterable([ele[0] for ele in output]) mets = chain.from_iterable([ele[1] for ele in output]) - else: series, mets = MSCommScores.calculate_scores(pairs, models_media, environments, RAST_genomes, lazy_load, - kbase_obj, cip_score, costless, skip_bad_media, anmne_comm) + else: series, mets = CommScores.calculate_scores(pairs, models_media, environments, annotated_genomes, lazy_load, + kbase_obj, cip_score, costless, skip_bad_media, anme_comm, print_progress) return concat(series, axis=1).T, mets @staticmethod def mro(member_models:Iterable=None, mem_media:dict=None, min_growth=0.1, media_dict=None, - raw_content=False, environment=None, printing=False, compatibilized=False): + raw_content=False, environment=None, skip_bad_media=False, printing=False, compatibilized=False): """Determine the overlap of nutritional requirements (minimal media) between member organisms.""" # determine the member minimal media if they are not parameterized if not mem_media: if not member_models: raise ParameterError("The either member_models or minimal_media parameter must be defined.") - member_models = _compatibilize(member_models, printing) - mem_media = _get_media(media_dict, None, member_models, min_growth, environment, printing=printing) + member_models = member_models if compatibilized else _compatibilize(member_models, printing) + mem_media = _get_media(media_dict, None, member_models, min_growth, environment, printing=printing, + skip_bad_media=skip_bad_media) if "community_media" in mem_media: mem_media = mem_media["members"] # MROs = array(list(map(len, pairs.values()))) / array(list(map(len, mem_media.values()))) mro_values = {} - for model1, model2 in permutations(member_models, 2): + for model1, model2 in combinations(member_models, 2): intersection = set(mem_media[model1.id]["media"].keys()) & set(mem_media[model2.id]["media"].keys()) - member_media = mem_media[model1.id]["media"] - if raw_content: mro_values[f"{model1.id}---{model2.id})"] = (intersection, member_media) - else: mro_values[f"{model1.id}---{model2.id})"] = ( - len(intersection)/len(member_media), len(intersection), len(member_media)) + inter = [ex.replace("EX_", "").replace("_e0", "") for ex in intersection] + m1_media = mem_media[model1.id]["media"] ; m2_media = mem_media[model2.id]["media"] + if raw_content: mro_values.update({f"{model1.id}---{model2.id})": (inter, m1_media), + f"{model2.id}---{model1.id})": (inter, m2_media)}) + else: + mro_values.update({f"{model1.id}---{model2.id})": 100*(len(inter) / len(m1_media), len(inter), len(m1_media)), + f"{model2.id}---{model1.id})": 100*(len(inter) / len(m2_media), len(inter), len(m2_media)), + "mets": inter}) return mro_values # return mean(list(map(len, pairs.values()))) / mean(list(map(len, mem_media.values()))) @staticmethod def mip(member_models: Iterable, com_model=None, min_growth=0.1, interacting_media_dict=None, noninteracting_media_dict=None, environment=None, printing=False, compatibilized=False, - costless=False, multi_output=False): + costless=False, multi_output=False, skip_bad_media=False): """Determine the quantity of nutrients that can be potentially sourced through syntrophy""" member_models, community = _load_models(member_models, com_model, not compatibilized, printing=printing) # determine the interacting and non-interacting media for the specified community .util.model noninteracting_medium, noninteracting_sol = _get_media( - noninteracting_media_dict, community, None, min_growth, environment, False) + noninteracting_media_dict, community, None, min_growth, environment, False, skip_bad_media=skip_bad_media) + if noninteracting_medium is None: return None if "community_media" in noninteracting_medium: noninteracting_medium = noninteracting_medium["community_media"] interacting_medium, interacting_sol = _get_media( - interacting_media_dict, community, None, min_growth, environment, True) + interacting_media_dict, community, None, min_growth, environment, True, skip_bad_media=skip_bad_media) + if interacting_medium is None: return None if "community_media" in interacting_medium: interacting_medium = interacting_medium["community_media"] interact_diff = DeepDiff(noninteracting_medium, interacting_medium) - if "dictionary_item_removed" not in interact_diff: return None, 0 + if "dictionary_item_removed" not in interact_diff: return None cross_fed_exIDs = [re.sub("(root\['|'\])", "", x) for x in interact_diff["dictionary_item_removed"]] # Determine each direction of the MIP score interactions comm_util = MSModelUtil(community) @@ -465,12 +537,12 @@ def mip(member_models: Iterable, com_model=None, min_growth=0.1, interacting_med or rxn.metabolites[mets[0]] < 0 and interacting_sol.fluxes[rxn.id] < 0): # donor directionalMIP[rxn_model.id].append(metID) if metID in cross_fed_copy: cross_fed_copy.remove(metID) ; continue - if printing: print(f"{mets[0]} in {rxn.id} ({rxn.reaction}) is not received in the simulated interaction.") + # if printing: print(f"{mets[0]} in {rxn.id} ({rxn.reaction}) is not assigned a receiving member.") if cross_fed_copy != [] and printing: print(f"Missing directions for the {cross_fed_copy} cross-fed metabolites") outputs = [directionalMIP] # TODO categorize all of the cross-fed substrates to examine potential associations of specific compounds if costless: - costless_mets, numExs = MSCommScores.cip(member_models=member_models) + costless_mets, numExs = CommScores.cip(member_models=member_models) # print(list(directionalMIP.values()), costless_mets) costlessDirectionalMIP = {member_name: set(receive_mets).intersection(costless_mets) for member_name, receive_mets in directionalMIP.items()} @@ -516,12 +588,12 @@ def mp(member_models:Iterable, environment, com_model=None, minimal_media=None, org_possible_contr = [ex_rxn for ex_rxn in model_util.exchange_list() if (ex_rxn.id not in community.medium and ex_rxn.upper_bound > 0)] # ic(org_possible_contributions, len(model_util.exchange_list()), len(community.medium)) - scores, possible_contr = MSCommScores.contributions(org_possible_contr, scores, model_util, abstol) + scores, possible_contr = CommScores.contributions(org_possible_contr, scores, model_util, abstol) while DeepDiff(org_possible_contr, possible_contr): print("remaining possible_contributions", len(possible_contr), end="\r") ## optimize the sum of the remaining exchanges that have not surpassed the abstol org_possible_contr = possible_contr[:] - scores, possible_contr = MSCommScores.contributions(org_possible_contr, scores, model_util, abstol) + scores, possible_contr = CommScores.contributions(org_possible_contr, scores, model_util, abstol) ## individually checks the remaining possible contributions for ex_rxn in possible_contr: @@ -545,8 +617,8 @@ def mu(member_models:Iterable, environment=None, member_excreta=None, n_solution if missing_members: print(f"The {','.join(missing_members)} members are missing from the defined " f"excreta list and will therefore be determined through an additional MP simulation.") - member_excreta.update(MSCommScores.mp(missing_members, environment)) - else: member_excreta = MSCommScores.mp(member_models, environment, None, abstol, printing) + member_excreta.update(CommScores.mp(missing_members, environment)) + else: member_excreta = CommScores.mp(member_models, environment, None, abstol, printing) for org_model in member_models: other_excreta = set(chain.from_iterable([excreta for model, excreta in member_excreta.items() if model != org_model.id])) @@ -632,88 +704,83 @@ def sc(member_models:Iterable=None, com_model=None, min_growth=0.1, n_solutions= @staticmethod def gyd(member_models:Iterable=None, model_utils:Iterable=None, environment=None, coculture_growth=False, community=None, anme_comm=False): - diffs = {} + gyds = {} for combination in combinations(model_utils or member_models, 2): if model_utils is None: model1_util = MSModelUtil(combination[0], True) ; model2_util = MSModelUtil(combination[1], True) + print(f"{model1_util.model.id} ++ {model2_util.model.id}", model1_util.model.slim_optimize(), model2_util.model.slim_optimize()) if environment and not anme_comm: model1_util.add_medium(environment); model2_util.add_medium(environment) else: model1_util = combination[0] ; model2_util = combination[1] if not coculture_growth: - G_m1, G_m2 = model1_util.model.slim_optimize(), model2_util.model.slim_optimize() - G_m1 = G_m1 if FBAHelper.isnumber(str(G_m1)) else 0 - G_m2 = G_m2 if FBAHelper.isnumber(str(G_m2)) else 0 + G_m1, G_m2 = CommScores._determine_growths([model1_util, model2_util]) + G_m1, G_m2 = G_m1 if FBAHelper.isnumber(str(G_m1)) else 0, G_m2 if FBAHelper.isnumber(str(G_m2)) else 0 else: community = community or MSCommunity(member_models=[model1_util.model, model2_util.model], ids=[mem.id for mem in member_models]) community.run_fba() member_growths = community.parse_member_growths() G_m1, G_m2 = member_growths[model1_util.model.id], member_growths[model2_util.model.id] - if G_m2 <= 0 and G_m1 <= 0: diffs[f"{model1_util.model.id} ++ {model2_util.model.id}"] = None ; continue - if G_m2 <= 0 or G_m1 <= 0: diffs[f"{model1_util.model.id} ++ {model2_util.model.id}"] = 1e5 ; continue - diffs[f"{model1_util.model.id} ++ {model2_util.model.id}"] = abs(G_m1-G_m2) / min([G_m1, G_m2]) - return diffs + if G_m2 <= 0 and G_m1 <= 0: gyds[f"{model1_util.model.id} ++ {model2_util.model.id}"] = ("", G_m1, G_m2) ; continue + if G_m2 <= 0 or G_m1 <= 0: gyds[f"{model1_util.model.id} ++ {model2_util.model.id}"] = ("", G_m1, G_m2) ; continue + gyds[f"{model1_util.model.id} ++ {model2_util.model.id}"] = (abs(G_m1-G_m2)/G_m1, abs(G_m2-G_m1)/G_m2, G_m1, G_m2) + return gyds @staticmethod - def pc(member_models, com_model=None, comm_sol=None, comm_effects=True, community=None, compatibilized=False): - assert com_model is not None if comm_effects else True, "The < com_model > is needed for < comm_effects >." - if comm_sol is None: - if com_model is None: member_models, com_model = _load_models( - member_models, com_model, not compatibilized, printing=False) - comm_sol = com_model.optimize() - comm_obj = comm_sol.objective_value if com_model is None or not comm_effects else com_model.slim_optimize() - member_growths = {model.id: model.slim_optimize() for model in member_models} - pc_score = (comm_obj/sum(list(member_growths.values()))) - if not comm_effects: return pc_score - # TODO possibly leverage the ineraction_type() function instead of duplicated the following logic + def pc(member_models=None, modelutils=None, com_model=None, isolate_growths=None, comm_sol=None, + environment=None, comm_effects=True, community=None, interaction_threshold=0.1, compatibilized=False): + assert member_models or modelutils or community, "Members must be defined through either < member_models >" \ + "or < modelutils > or < community >." + member_models = member_models or [mem.model for mem in modelutils] or community.members + if com_model is None: member_models, com_model = _load_models(member_models, None, not compatibilized, printing=False) community = community or MSCommunity(com_model, member_models) - comm_member_growths = {mem.id: comm_sol.fluxes[mem.primary_biomass.id] for mem in community.members} - comm_growth_effect = {memID: comm_member_growths[memID]/member_growths[memID] for memID in member_growths} - return (pc_score, comm_growth_effect) + if comm_sol is None: community.util.add_medium(environment) ; comm_sol = community.util.model.optimize() + model_utils = modelutils or [MSModelUtil(mem, True) for mem in member_models] ; modelutils = [] + for mem in model_utils: + mem.add_medium(environment) ; modelutils.append(mem) + if isolate_growths is None: isolate_growths = {mem.id: mem.model.slim_optimize() for mem in modelutils} + pc_score = (comm_sol.objective_value/sum(list(isolate_growths.values()))) + if not comm_effects: return pc_score - @staticmethod - def bit(member_models=None, com_model=None, member_mono_growths=None, comm_sol=None, community=None, - interaction_threshold=0.1): - if member_mono_growths is None: member_mono_growths = {mem.id: mem.slim_optimize() for mem in member_models} - comm_sol = comm_sol or com_model.optimize() - community = community or MSCommunity(com_model, member_models) - com_members_sols = {mem.id: comm_sol.fluxes[mem.primary_biomass.id] for mem in community.members} - # track the effects of communal growth upon each - rel_comm_growth = {memID: (com_members_sols[memID] / member_mono_growths[memID]) for memID in com_members_sols} - growth_diffs = array(list(rel_comm_growth.values())) - mutualism_bound, competitive_bound = 1+interaction_threshold, 1-interaction_threshold - if all(growth_diffs > mutualism_bound): return "mutualism" - if all(growth_diffs < competitive_bound): return "competitive" - if ((mutualism_bound > growth_diffs) & (growth_diffs > competitive_bound)).all(): return "neutral" - if all(growth_diffs > competitive_bound) and any(growth_diffs > mutualism_bound): return "commensalism" - if all(growth_diffs < mutualism_bound) and any(growth_diffs < competitive_bound): return "amensalism" - if any(growth_diffs > mutualism_bound) and any(growth_diffs < competitive_bound): return "parasitism" + comm_member_growths = {mem.id: comm_sol.fluxes[mem.primary_biomass.id] for mem in community.members} + comm_growth_effect = {memID: nanFilter(comm_environ/isolate_growths[memID]) + for memID, comm_environ in comm_member_growths.items()} + growth_diffs = array([nanFilter(x, False) for x in list(comm_growth_effect.values())]) + th_pos, th_neg = 1+interaction_threshold, 1-interaction_threshold + if all(growth_diffs > th_pos): bit = "mutualism" + elif all(growth_diffs < th_neg): bit = "competitive" + elif ((th_pos > growth_diffs) & (growth_diffs > th_neg)).all(): bit = "neutral" + elif all(growth_diffs > th_neg) and any(growth_diffs > th_pos): bit = "commensalism" + elif all(growth_diffs < th_pos) and any(growth_diffs < th_neg): bit = "amensalism" + elif any(growth_diffs > th_pos) and any(growth_diffs < th_neg): bit = "parasitism" + else: print(f"The relative growths {comm_growth_effect} from {comm_member_growths} are not captured.") ; bit = "" + return (pc_score, comm_growth_effect, comm_member_growths, bit) @staticmethod - def bss(member_models:Iterable=None, model_utils:Iterable=None, environments=None, minMedia=None, anme_comm=False): - def compute_score(environment="complete"): + def bss(member_models:Iterable=None, model_utils:Iterable=None, environments=None, minMedia=None, skip_bad_media=False): + def compute_score(minMedia, environment=None, index=0): + minMedia = minMedia or _get_media(model_s_=[modelUtil.model for modelUtil in model_utils], + environment=environment, skip_bad_media=skip_bad_media) model1_media = set([re.sub(r"(\_\w\d+$)", "", rxnID.replace("EX_", "")) for rxnID in minMedia[model1_util.id]["media"].keys()]) model2_media = set([re.sub(r"(\_\w\d+$)", "", rxnID.replace("EX_", "")) for rxnID in minMedia[model2_util.id]["media"].keys()]) model1_internal = {rm_comp(met.id) for rxn in model1_util.internal_list() for met in rxn.products} model2_internal = {rm_comp(met.id) for rxn in model2_util.internal_list() for met in rxn.products} - bss_scores[f"{model1_util.id} invading {model2_util.id} in {environment}"] = ( - len(model1_media.intersection(model2_internal)) / len(model1_media)) - bss_scores[f"{model2_util.id} invading {model1_util.id} in {environment}"] = ( + bss_scores[f"{model1_util.id} supporting {model2_util.id} in media{index}"] = (model1_internal, len(model2_media.intersection(model1_internal)) / len(model2_media)) + bss_scores[f"{model2_util.id} supporting {model1_util.id} in media{index}"] = (model2_internal, + len(model1_media.intersection(model2_internal)) / len(model1_media)) bss_scores = {} for combination in combinations(model_utils or member_models, 2): - minMedia = minMedia or _get_media(model_s_=[modelUtil.model for modelUtil in model_utils]) if model_utils is None: model1_util = MSModelUtil(combination[0], True) ; model2_util = MSModelUtil(combination[1], True) model_utils = [model1_util, model2_util] else: model1_util = combination[0] ; model2_util = combination[1] if environments: for index, environment in enumerate(environments): - if not anme_comm: model1_util.add_medium(environment); model2_util.add_medium(environment) - compute_score(f"environment{index}") - else: compute_score() + compute_score(minMedia, environment, index) + else: compute_score(minMedia) return bss_scores @staticmethod @@ -724,7 +791,8 @@ def mqs(): @staticmethod def _calculate_jaccard_score(set1, set2): if set1 == set2: print(f"The sets are identical, with a length of {len(set1)}.") - return len(set1.intersection(set2)) / len(set1.union(set2)) + if len(set1.union(set2)) == 0: return (None, None) + return (set1.intersection(set2), len(set1.intersection(set2)) / len(set1.union(set2))) @staticmethod def get_all_genomes_from_ws(ws_id, kbase_object=None, cobrakbase_repo_path:str=None, kbase_token_path:str=None): @@ -747,37 +815,37 @@ def get_genome(genome_name): for genome_name in genome_names} @staticmethod - def fc(models:Iterable=None, kbase_object=None, cobrakbase_repo_path:str=None, # RAST Functional Complementarity - kbase_token_path:str=None, RAST_genomes:dict=None, printing=False): - if any([not hasattr(model, "genome_ref") for model in models]): return None - if not isinstance(RAST_genomes, dict): + def fs(models:Iterable=None, kbase_object=None, cobrakbase_repo_path:str=None, + kbase_token_path:str=None, annotated_genomes:dict=None, printing=False): + if not isinstance(annotated_genomes, dict): if not kbase_object: import os ; os.environ["HOME"] = cobrakbase_repo_path ; import cobrakbase with open(kbase_token_path) as token_file: kbase_object = cobrakbase.KBaseAPI(token_file.readline()) - RAST_genomes = {model.id: kbase_object.get_from_ws(model.genome_ref) for model in models} - elif not isinstance(RAST_genomes, dict): RAST_genomes = dict(zip([model.id for model in models], RAST_genomes)) + annotated_genomes = {model.id: kbase_object.get_from_ws(model.genome_ref) + for model in models if hasattr(model, "genome_ref")} + elif isinstance(annotated_genomes, list): annotated_genomes = dict(zip([model.id for model in models], annotated_genomes)) elif models is not None: - RAST_genomes = {k:v for k,v in RAST_genomes.items() if k in [model.id for model in models]} - genome_combinations = list(combinations(RAST_genomes.keys(), 2)) - if printing: print(f"The Functionality Score (FC) will be calculated for {len(genome_combinations)} pairs.") - if not isinstance(list(RAST_genomes.values())[0], dict): + annotated_genomes = {k:v for k,v in annotated_genomes.items() if k in [model.id for model in models]} + genome_combinations = list(combinations(annotated_genomes.keys(), 2)) + if printing: print(f"The Functionality Score (FS) will be calculated for {len(genome_combinations)} pairs.") + if not isinstance(list(annotated_genomes.values())[0], dict): genome1_set, genome2_set = set(), set() distances = {} for genome1, genome2 in genome_combinations: - for j in RAST_genomes[genome1].features: + for j in annotated_genomes[genome1].features: for key, val in j.ontology_terms.items(): if key == 'SSO': genome1_set.update(val) - for j in RAST_genomes[genome2].features: + for j in annotated_genomes[genome2].features: for key, val in j.ontology_terms.items(): if key == 'SSO': genome2_set.update(val) - distances[f"{genome1} ++ {genome2}"] = MSCommScores._calculate_jaccard_score(genome1_set, genome2_set) + distances[f"{genome1} ++ {genome2}"] = CommScores._calculate_jaccard_score(genome1_set, genome2_set) else: - distances = {f"{genome1} ++ {genome2}": MSCommScores._calculate_jaccard_score( - set(list(content["SSO"].keys())[0] for dic in RAST_genomes[genome1]["cdss"] + distances = {f"{genome1} ++ {genome2}": CommScores._calculate_jaccard_score( + set(list(content["SSO"].keys())[0] for dic in annotated_genomes[genome1]["cdss"] for x, content in dic.items() if x == "ontology_terms" and len(content["SSO"].keys()) > 0), - set(list(content["SSO"].keys())[0] for dic in RAST_genomes[genome2]["cdss"] + set(list(content["SSO"].keys())[0] for dic in annotated_genomes[genome2]["cdss"] for x, content in dic.items() if x == "ontology_terms" and len(content["SSO"].keys()) > 0)) - for genome1, genome2 in combinations(RAST_genomes.keys(), 2)} + for genome1, genome2 in combinations(annotated_genomes.keys(), 2)} return distances @staticmethod @@ -788,10 +856,10 @@ def smetana(member_models: Iterable, environment, com_model=None, min_growth=0.1 member_models, com_model, compatibilized==False, printing=printing) sc = None if not prior_values: - mp = MSCommScores.mp(member_models, environment, com_model, abstol) - mu = MSCommScores.mu(member_models, environment, mp, n_solutions, abstol, compatibilized) + mp = CommScores.mp(member_models, environment, com_model, abstol) + mu = CommScores.mu(member_models, environment, mp, n_solutions, abstol, compatibilized) if sc_coupling: - sc = MSCommScores.sc(member_models, com_model, min_growth, n_solutions, abstol, compatibilized) + sc = CommScores.sc(member_models, com_model, min_growth, n_solutions, abstol, compatibilized) elif len(prior_values) == 3: sc, mu, mp = prior_values else: mu, mp = prior_values diff --git a/modelseedpy/community/commscores_template.html b/modelseedpy/community/commscores_template.html index 80976d17..b379568a 100644 --- a/modelseedpy/community/commscores_template.html +++ b/modelseedpy/community/commscores_template.html @@ -43,16 +43,37 @@

CommScores Results

+