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prepare PIRSR 2023_05 update
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tgrego committed Oct 6, 2023
1 parent 7b8c358 commit de8ac68
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Showing 4 changed files with 7 additions and 7 deletions.
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Expand Up @@ -194,11 +194,11 @@ pirsf.pl.binary.switches=--outfmt i5
hmmer3.hmmsearch.switches.pirsf=-E 0.01 --acc

# PIRSR
pirsr.signature.library.release=2021_05
pirsr.signature.library.release=2023_05
pirsr.binary.path=${bin.directory}/pirsr/0.1/pirsr.py
pirsr.srhmm.path=${data.directory}/pirsr/2021_05/sr_hmm_all
pirsr.data.path=${data.directory}/pirsr/2021_05/
pirsr.rules.path=${data.directory}/pirsr/2021_05/sr_uru.json
pirsr.srhmm.path=${data.directory}/pirsr/2023_05/sr_hmm_all
pirsr.data.path=${data.directory}/pirsr/2023_05/
pirsr.rules.path=${data.directory}/pirsr/2023_05/sr_uru.json
hmmer3.hmmsearch.cpu.switch.pirsr=--cpu 1
pirsr.hmmsearch.force=true
hmmer3.hmmsearch.switches.pirsr=-E 0.01 --acc
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Expand Up @@ -55,8 +55,8 @@ pirsf.signature.library.release=3.10
pirsf.sfhmm.path=data/pirsf/3.10/sf_hmm_all

# PIRSR
pirsr.srhmm.path=data/pirsr/2021_05/sr_hmm_all
pirsr.signature.library.release=2021_05
pirsr.srhmm.path=data/pirsr/2023_05/sr_hmm_all
pirsr.signature.library.release=2023_05

# PRINTS
prints.kdat.path=data/prints/42.0/prints.kdat
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Expand Up @@ -27,7 +27,7 @@ ncbifam.hmm.path=${data.directory}/ncbifam/12.0/ncbifam.hmm
panther.hmm.path=${data.directory}/panther/17.0/famhmm/binHmm
pfam-a.hmm.path=${data.directory}/pfam/36.0/pfam_a.hmm
pirsf.sfhmm.path=${data.directory}/pirsf/3.10/sf_hmm_all
pirsr.srhmm.path=${data.directory}/pirsr/2021_05/sr_hmm_all
pirsr.srhmm.path=${data.directory}/pirsr/2023_05/sr_hmm_all
sfld.hmm.path=${data.directory}/sfld/4/sfld.hmm
superfamily.hmm.path=${data.directory}/superfamily/1.75/hmmlib_1.75

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