From 77ca0ae661abd57f7473787dcd0286938f851728 Mon Sep 17 00:00:00 2001 From: Tiago Grego Date: Fri, 29 Nov 2024 13:48:44 +0000 Subject: [PATCH] updade ncbifam to 16.0 --- .../src/main/resources/application-default.properties | 4 ++-- .../data/ncbifam/{15.0 => 16.0}/ncbifam.hmm | 0 .../support-mini-x86-32/installer.properties | 4 ++-- .../support-mini-x86-32/interproscan.properties | 2 +- 4 files changed, 5 insertions(+), 5 deletions(-) rename core/jms-implementation/support-mini-x86-32/data/ncbifam/{15.0 => 16.0}/ncbifam.hmm (100%) diff --git a/core/jms-implementation/src/main/resources/application-default.properties b/core/jms-implementation/src/main/resources/application-default.properties index a9b910408..6a9fa42dd 100644 --- a/core/jms-implementation/src/main/resources/application-default.properties +++ b/core/jms-implementation/src/main/resources/application-default.properties @@ -145,8 +145,8 @@ binary.mobidb.path=${bin.directory}/mobidb/idrpred-cli.py mobidb.binary.cpu.switches=--threads 1 # NCBIfam -ncbifam.signature.library.release=15.0 -ncbifam.hmm.path=${data.directory}/ncbifam/15.0/ncbifam.hmm +ncbifam.signature.library.release=16.0 +ncbifam.hmm.path=${data.directory}/ncbifam/16.0/ncbifam.hmm hmmer3.hmmsearch.switches.ncbifam=-Z 61295632 --cut_tc hmmer3.hmmsearch.cpu.switch.ncbifam=--cpu 1 diff --git a/core/jms-implementation/support-mini-x86-32/data/ncbifam/15.0/ncbifam.hmm b/core/jms-implementation/support-mini-x86-32/data/ncbifam/16.0/ncbifam.hmm similarity index 100% rename from core/jms-implementation/support-mini-x86-32/data/ncbifam/15.0/ncbifam.hmm rename to core/jms-implementation/support-mini-x86-32/data/ncbifam/16.0/ncbifam.hmm diff --git a/core/jms-implementation/support-mini-x86-32/installer.properties b/core/jms-implementation/support-mini-x86-32/installer.properties index 26bd7cfdd..8bd0e9d00 100644 --- a/core/jms-implementation/support-mini-x86-32/installer.properties +++ b/core/jms-implementation/support-mini-x86-32/installer.properties @@ -39,8 +39,8 @@ hamap.profile.models.path=data/hamap/2023_05/hamap.prf mobidb.signature.library.release=4.0 # NCBIFam -ncbifam.signature.library.release=15.0 -ncbifam.hmm.path=data/ncbifam/15.0/ncbifam.hmm +ncbifam.signature.library.release=16.0 +ncbifam.hmm.path=data/ncbifam/16.0/ncbifam.hmm # PANTHER panther.signature.library.release=19.0 diff --git a/core/jms-implementation/support-mini-x86-32/interproscan.properties b/core/jms-implementation/support-mini-x86-32/interproscan.properties index adc7f5a00..69b3a6c5c 100644 --- a/core/jms-implementation/support-mini-x86-32/interproscan.properties +++ b/core/jms-implementation/support-mini-x86-32/interproscan.properties @@ -22,7 +22,7 @@ binary.hmmer3.path=${bin.directory}/hmmer/hmmer3/3.3 antifam.hmm.path=${data.directory}/antifam/7.0/AntiFam.hmm gene3d.hmm.path=${data.directory}/gene3d/4.3.0/gene3d_main.hmm hamap.hmm.path=${data.directory}/hamap/2023_05/hamap.hmm.lib -ncbifam.hmm.path=${data.directory}/ncbifam/15.0/ncbifam.hmm +ncbifam.hmm.path=${data.directory}/ncbifam/16.0/ncbifam.hmm panther.hmm.path=${data.directory}/panther/19.0/famhmm/binHmm pfam-a.hmm.path=${data.directory}/pfam/37.2/pfam_a.hmm pirsf.sfhmm.path=${data.directory}/pirsf/3.10/sf_hmm_all