update pfam to 37.2

ebi-pf-team · Nov 28, 2024 · 743109d · 743109d
1 parent 1f48e66
commit 743109d
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diff --git a/core/jms-implementation/src/main/resources/application-default.properties b/core/jms-implementation/src/main/resources/application-default.properties
@@ -163,11 +163,11 @@ hmmer3.hmmsearch.switches.panther=-Z 65000000 -E 0.001 --domE 0.00000001 --incdo
 panther.binary.switches=-e 0.00000001 --keep
 
 # PFam
-pfam-a.signature.library.release=37.1
-pfam-a.hmm.path=${data.directory}/pfam/37.1/pfam_a.hmm
-pfam-a.seed.path=${data.directory}/pfam/37.1/pfam_a.seed
-pfam-clans.path=${data.directory}/pfam/37.1/pfam_clans
-pfam-a.dat.path=${data.directory}/pfam/37.1/pfam_a.dat
+pfam-a.signature.library.release=37.2
+pfam-a.hmm.path=${data.directory}/pfam/37.2/pfam_a.hmm
+pfam-a.seed.path=${data.directory}/pfam/37.2/pfam_a.seed
+pfam-clans.path=${data.directory}/pfam/37.2/pfam_clans
+pfam-a.dat.path=${data.directory}/pfam/37.2/pfam_a.dat
 hmmer3.hmmsearch.cpu.switch.pfama=--cpu 1
 hmmer3.hmmsearch.switches.pfama=-Z 61295632 --cut_ga
 pfam.min.length=8

diff --git a/...ort-mini-x86-32/data/pfam/37.1/pfam_a.dat → ...ort-mini-x86-32/data/pfam/37.2/pfam_a.dat b/...ort-mini-x86-32/data/pfam/37.1/pfam_a.dat → ...ort-mini-x86-32/data/pfam/37.2/pfam_a.dat
diff --git a/...ort-mini-x86-32/data/pfam/37.1/pfam_a.hmm → ...ort-mini-x86-32/data/pfam/37.2/pfam_a.hmm b/...ort-mini-x86-32/data/pfam/37.1/pfam_a.hmm → ...ort-mini-x86-32/data/pfam/37.2/pfam_a.hmm
diff --git a/...rt-mini-x86-32/data/pfam/37.1/pfam_a.seed → ...rt-mini-x86-32/data/pfam/37.2/pfam_a.seed b/...rt-mini-x86-32/data/pfam/37.1/pfam_a.seed → ...rt-mini-x86-32/data/pfam/37.2/pfam_a.seed
diff --git a/...ort-mini-x86-32/data/pfam/37.1/pfam_clans → ...ort-mini-x86-32/data/pfam/37.2/pfam_clans b/...ort-mini-x86-32/data/pfam/37.1/pfam_clans → ...ort-mini-x86-32/data/pfam/37.2/pfam_clans
@@ -314,6 +314,8 @@
 #=GF MB   PF24406;
 #=GF MB   PF24786;
 #=GF MB   PF01043;
+#=GF MB   PF04084;
+#=GF MB   PF24883;
 //
 # STOCKHOLM 1.0
 #=GF ID   ABC-2

diff --git a/core/jms-implementation/support-mini-x86-32/installer.properties b/core/jms-implementation/support-mini-x86-32/installer.properties
@@ -47,8 +47,8 @@ panther.signature.library.release=19.0
 panther.models.dir=data/panther/19.0/
 
 # PFAM
-pfam-a.signature.library.release=37.1
-pfam-a.hmm.path=data/pfam/37.1/pfam_a.hmm
+pfam-a.signature.library.release=37.2
+pfam-a.hmm.path=data/pfam/37.2/pfam_a.hmm
 
 # PIRSF
 pirsf.signature.library.release=3.10

diff --git a/core/jms-implementation/support-mini-x86-32/interproscan.properties b/core/jms-implementation/support-mini-x86-32/interproscan.properties
@@ -24,7 +24,7 @@ gene3d.hmm.path=${data.directory}/gene3d/4.3.0/gene3d_main.hmm
 hamap.hmm.path=${data.directory}/hamap/2023_05/hamap.hmm.lib
 ncbifam.hmm.path=${data.directory}/ncbifam/15.0/ncbifam.hmm
 panther.hmm.path=${data.directory}/panther/19.0/famhmm/binHmm
-pfam-a.hmm.path=${data.directory}/pfam/37.1/pfam_a.hmm
+pfam-a.hmm.path=${data.directory}/pfam/37.2/pfam_a.hmm
 pirsf.sfhmm.path=${data.directory}/pirsf/3.10/sf_hmm_all
 pirsr.srhmm.path=${data.directory}/pirsr/2023_05/sr_hmm_all
 sfld.hmm.path=${data.directory}/sfld/4/sfld.hmm