bump CDD to 3.21

ebi-pf-team · May 22, 2024 · 0a8eed6 · 0a8eed6
1 parent 82dcd94
commit 0a8eed6
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Showing 18 changed files with 6 additions and 6 deletions.
diff --git a/core/jms-implementation/src/main/resources/application-default.properties b/core/jms-implementation/src/main/resources/application-default.properties
@@ -93,10 +93,10 @@ hmmer3.hmmsearch.cpu.switch.antifam=--cpu 1
 hmmer3.hmmsearch.switches.antifam=--cut_ga
 
 #CDD
-cdd.signature.library.release=3.20
-cdd.signature.list.path=${data.directory}/cdd/3.20/data/cddid.tbl
-cdd.library.path=${data.directory}/cdd/3.20/db/Cdd_NCBI
-cdd.data.path=${data.directory}/cdd/3.20/data
+cdd.signature.library.release=3.21
+cdd.signature.list.path=${data.directory}/cdd/3.21/data/cddid.tbl
+cdd.library.path=${data.directory}/cdd/3.21/db/Cdd_NCBI
+cdd.data.path=${data.directory}/cdd/3.21/data
 binary.rpsblast.path=${bin.directory}/cdd/rpsblast
 rpsblast.switches.cdd=-evalue 0.01 -seg no -outfmt 11
 binary.rpsbproc.path=${bin.directory}/cdd/rpsbproc

diff --git a/core/jms-implementation/support-mini-x86-32/bin/cdd/rpsblast b/core/jms-implementation/support-mini-x86-32/bin/cdd/rpsblast
diff --git a/.../data/cdd/3.20/data/bitscore_specific.txt → .../data/cdd/3.21/data/bitscore_specific.txt b/.../data/cdd/3.20/data/bitscore_specific.txt → .../data/cdd/3.21/data/bitscore_specific.txt
diff --git a/...ni-x86-32/data/cdd/3.20/data/cddannot.dat → ...ni-x86-32/data/cdd/3.21/data/cddannot.dat b/...ni-x86-32/data/cdd/3.20/data/cddannot.dat → ...ni-x86-32/data/cdd/3.21/data/cddannot.dat
diff --git a/...2/data/cdd/3.20/data/cddannot_generic.dat → ...2/data/cdd/3.21/data/cddannot_generic.dat b/...2/data/cdd/3.20/data/cddannot_generic.dat → ...2/data/cdd/3.21/data/cddannot_generic.dat
diff --git a/...-mini-x86-32/data/cdd/3.20/data/cddid.tbl → ...-mini-x86-32/data/cdd/3.21/data/cddid.tbl b/...-mini-x86-32/data/cdd/3.20/data/cddid.tbl → ...-mini-x86-32/data/cdd/3.21/data/cddid.tbl
diff --git a/...ini-x86-32/data/cdd/3.20/data/cdtrack.txt → ...ini-x86-32/data/cdd/3.21/data/cdtrack.txt b/...ini-x86-32/data/cdd/3.20/data/cdtrack.txt → ...ini-x86-32/data/cdd/3.21/data/cdtrack.txt
diff --git a/...ta/cdd/3.20/data/family_superfamily_links → ...ta/cdd/3.21/data/family_superfamily_links b/...ta/cdd/3.20/data/family_superfamily_links → ...ta/cdd/3.21/data/family_superfamily_links
diff --git a/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.aux → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.aux b/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.aux → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.aux
diff --git a/...ini-x86-32/data/cdd/3.20/db/Cdd_NCBI.freq → ...ini-x86-32/data/cdd/3.21/db/Cdd_NCBI.freq b/...ini-x86-32/data/cdd/3.20/db/Cdd_NCBI.freq → ...ini-x86-32/data/cdd/3.21/db/Cdd_NCBI.freq
diff --git a/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.loo → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.loo b/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.loo → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.loo
diff --git a/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.phr → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.phr b/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.phr → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.phr
diff --git a/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.pin → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.pin b/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.pin → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.pin
diff --git a/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.psd → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.psd b/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.psd → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.psd
diff --git a/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.psi → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.psi b/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.psi → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.psi
diff --git a/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.psq → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.psq b/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.psq → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.psq
diff --git a/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.rps → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.rps b/...mini-x86-32/data/cdd/3.20/db/Cdd_NCBI.rps → ...mini-x86-32/data/cdd/3.21/db/Cdd_NCBI.rps
diff --git a/core/jms-implementation/support-mini-x86-32/installer.properties b/core/jms-implementation/support-mini-x86-32/installer.properties
@@ -15,8 +15,8 @@ antifam.signature.library.release=7.0
 antifam.hmm.path=data/antifam/7.0/AntiFam.hmm
 
 # CDD
-cdd.signature.library.release=3.20
-cdd.signature.list.path=data/cdd/3.20/data/cddid.tbl
+cdd.signature.library.release=3.21
+cdd.signature.list.path=data/cdd/3.21/data/cddid.tbl
 
 # Coils
 coils.signature.library.release=2.2.1