diff --git a/reshape.ipynb b/reshape.ipynb
index e874b6c..1cb3c32 100644
--- a/reshape.ipynb
+++ b/reshape.ipynb
@@ -1857,7 +1857,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 10,
    "id": "f85ea9b9-c0cc-41d1-b60e-9abf6aa59b68",
    "metadata": {},
    "outputs": [
@@ -1865,22 +1865,30 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "Processing folder: NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200801_161441_reflectance\n"
+      "Processing folder: NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200807_170802_reflectance\n"
      ]
     },
     {
      "data": {
       "application/vnd.jupyter.widget-view+json": {
-       "model_id": "816df44aa6f94a9da252152bb66b25dc",
+       "model_id": "68d0e9b150a548e49532db11b53584ac",
        "version_major": 2,
        "version_minor": 0
       },
       "text/plain": [
-       "Processing CSV:   0%|          | 0/66 [00:00<?, ?chunk/s]"
+       "Processing CSV:   0%|          | 0/54 [00:00<?, ?chunk/s]"
       ]
      },
      "metadata": {},
      "output_type": "display_data"
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "No matching rows found in the large CSV.\n",
+      "Filtered data saved to NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200807_170802_reflectance/NEON_D13_NIWO_DP1_20200807_170802_reflectance_polygons.csv\n"
+     ]
     }
    ],
    "source": [
@@ -2011,11 +2019,679 @@
     "        print(f\"Error processing {folder_path}: {e}\")\n",
     "        \n",
     "# Example usage:\n",
-    "folder_path = \"NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200801_161441_reflectance\"\n",
+    "folder_path = \"NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200807_170802_reflectance\"\n",
     "polygons_path = 'Datasets/niwot_aop_polygons_2023_12_8_23_analysis_ready_half_diam.gpkg'\n",
     "\n",
     "combined_processing_function(folder_path, polygons_path)\n"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 17,
+   "id": "b8494229-143a-4dac-98bb-0bf84218dd1c",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Merged data saved to NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200731_155024_reflectance/NEON_D13_NIWO_DP1_20200731_155024_reflectance_polygons_merged.csv\n"
+     ]
+    }
+   ],
+   "source": [
+    "import os\n",
+    "import glob\n",
+    "import pandas as pd\n",
+    "import geopandas as gpd\n",
+    "import rasterio\n",
+    "from rasterio.windows import from_bounds\n",
+    "from shapely.geometry import box\n",
+    "\n",
+    "def process_folder_data(folder_path, polygons_path):\n",
+    "    \"\"\"\n",
+    "    Processes data within a given folder: finds a raster matching '*_envi', merges data extracted based\n",
+    "    on GeoPackage polygons with a CSV file matching '*_polygons.csv', and saves the result\n",
+    "    in the same folder with the folder name appended by '_polygons_merged.csv'.\n",
+    "\n",
+    "    Parameters:\n",
+    "    - folder_path (str): Path to the folder containing the raster and CSV files matching '*_polygons.csv'.\n",
+    "    - polygons_path (str): Path to the polygons file (GeoPackage).\n",
+    "    \"\"\"\n",
+    "    # Find the raster file ending with '_envi' but not '.hdr' or '.img'\n",
+    "    raster_files = glob.glob(os.path.join(folder_path, \"*_envi\"))\n",
+    "    raster_files = [f for f in raster_files if not f.endswith('.hdr') and not f.endswith('.img')]\n",
+    "\n",
+    "    # Find the CSV file matching '*_polygons.csv' pattern\n",
+    "    csv_files_to_merge = glob.glob(os.path.join(folder_path, \"*_polygons.csv\"))\n",
+    "\n",
+    "    if not raster_files or not csv_files_to_merge:\n",
+    "        print(\"Required raster or '*_polygons.csv' file not found.\")\n",
+    "        return\n",
+    "\n",
+    "    raster_path = raster_files[0]  # Assuming only one raster file matches\n",
+    "    csv_path_to_merge = csv_files_to_merge[0]  # Assuming only one CSV file matches\n",
+    "\n",
+    "    # Define the output CSV file path using the original polygons CSV file name\n",
+    "    output_csv_path = csv_path_to_merge.replace(\"_polygons.csv\", \"_polygons_merged.csv\")\n",
+    "\n",
+    "    # Load polygons from GeoPackage and extract data\n",
+    "    polygons = gpd.read_file(polygons_path).to_crs(\"EPSG:32613\")\n",
+    "\n",
+    "    all_data = []\n",
+    "    with rasterio.open(raster_path) as src:\n",
+    "        for _, poly in polygons.iterrows():\n",
+    "            if poly.geometry.is_empty or not box(*src.bounds).intersects(poly.geometry):\n",
+    "                continue\n",
+    "\n",
+    "            window = from_bounds(*poly.geometry.bounds, transform=src.transform)\n",
+    "            if window.width <= 0 or window.height <= 0:\n",
+    "                continue\n",
+    "\n",
+    "            attributes = poly.to_dict()\n",
+    "            row_off, col_off = map(int, (window.row_off, window.col_off))\n",
+    "            for row in range(row_off, row_off + int(window.height)):\n",
+    "                for col in range(col_off, col_off + int(window.width)):\n",
+    "                    all_data.append({'Pixel_Row': row, 'Pixel_Col': col, **attributes})\n",
+    "\n",
+    "    df_polygons_extracted = pd.DataFrame(all_data)\n",
+    "    \n",
+    "    # Load the '*_polygons.csv' to merge\n",
+    "    df_polygons_csv = pd.read_csv(csv_path_to_merge)\n",
+    "    \n",
+    "    # Merge the extracted polygon data with the '*_polygons.csv'\n",
+    "    merged_df = pd.merge(df_polygons_extracted, df_polygons_csv, on=['Pixel_Row', 'Pixel_Col'], how='inner')\n",
+    "    \n",
+    "    # Save the merged DataFrame to a new CSV file\n",
+    "    merged_df.to_csv(output_csv_path, index=False)\n",
+    "    print(f\"Merged data saved to {output_csv_path}\")\n",
+    "\n",
+    "\n",
+    "\n",
+    "# Example usage\n",
+    "\n",
+    "folder_path = \"NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200731_155024_reflectance\"\n",
+    "polygons_path = 'Datasets/niwot_aop_polygons_2023_12_8_23_analysis_ready_half_diam.gpkg'\n",
+    "\n",
+    "\n",
+    "process_folder_data(folder_path, polygons_path)\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 18,
+   "id": "51d38ea8-5962-4c33-bfa9-9f954e780c91",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing folder: NEON_D13_NIWO_DP1_20200801_161441_reflectance\n",
+      "Merged data saved to NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200801_161441_reflectance/NEON_D13_NIWO_DP1_20200801_161441_reflectance_polygons_merged.csv\n",
+      "Processing folder: NEON_D13_NIWO_DP1_20200731_155024_reflectance\n",
+      "Merged data saved to NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200731_155024_reflectance/NEON_D13_NIWO_DP1_20200731_155024_reflectance_polygons_merged.csv\n",
+      "Processing folder: NEON_D13_NIWO_DP1_20200807_155314_reflectance\n",
+      "Merged data saved to NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200807_155314_reflectance/NEON_D13_NIWO_DP1_20200807_155314_reflectance_polygons_merged.csv\n",
+      "Processing folder: NEON_D13_NIWO_DP1_20200807_163444_reflectance\n",
+      "Merged data saved to NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200807_163444_reflectance/NEON_D13_NIWO_DP1_20200807_163444_reflectance_polygons_merged.csv\n",
+      "Processing folder: NEON_D13_NIWO_DP1_20200807_170802_reflectance\n",
+      "Required raster or '*_polygons.csv' file not found.\n",
+      "Processing folder: .ipynb_checkpoints\n",
+      "Required raster or '*_polygons.csv' file not found.\n"
+     ]
+    }
+   ],
+   "source": [
+    "import os\n",
+    "\n",
+    "def process_all_folders(parent_directory, polygons_path):\n",
+    "    \"\"\"\n",
+    "    Searches all folders within the given parent directory and applies data processing\n",
+    "    to each folder found, using the previously defined processing function.\n",
+    "\n",
+    "    Parameters:\n",
+    "    - parent_directory (str): The parent directory containing folders to process.\n",
+    "    - polygons_path (str): Path to the polygons file (GeoPackage) used in processing.\n",
+    "    \"\"\"\n",
+    "    # Iterate over all items in the parent directory\n",
+    "    for item in os.listdir(parent_directory):\n",
+    "        # Construct the full path of the item\n",
+    "        full_path = os.path.join(parent_directory, item)\n",
+    "        # Check if the item is a directory\n",
+    "        if os.path.isdir(full_path):\n",
+    "            print(f\"Processing folder: {item}\")\n",
+    "            try:\n",
+    "                # Call the main processing function for each folder\n",
+    "                process_folder_data(full_path, polygons_path)\n",
+    "            except Exception as e:\n",
+    "                print(f\"An error occurred while processing {item}: {e}\")\n",
+    "        else:\n",
+    "            print(f\"Skipping non-directory item: {item}\")\n",
+    "\n",
+    "parent_directory = \"NIWOT_calibration_flight_08_2020\"\n",
+    "polygons_path = 'Datasets/niwot_aop_polygons_2023_12_8_23_analysis_ready_half_diam.gpkg'\n",
+    "process_all_folders(parent_directory, polygons_path)\n",
+    "\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 23,
+   "id": "735e0d71-54c5-48e5-bafb-34b8137d341d",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "/tmp/ipykernel_111792/2608631090.py:26: DtypeWarning: Columns (7,10,13,14,19,21) have mixed types. Specify dtype option on import or set low_memory=False.\n",
+      "  df = pd.read_csv(csv_file)\n",
+      "/tmp/ipykernel_111792/2608631090.py:26: DtypeWarning: Columns (7) have mixed types. Specify dtype option on import or set low_memory=False.\n",
+      "  df = pd.read_csv(csv_file)\n",
+      "/tmp/ipykernel_111792/2608631090.py:26: DtypeWarning: Columns (7,10) have mixed types. Specify dtype option on import or set low_memory=False.\n",
+      "  df = pd.read_csv(csv_file)\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Master CSV saved to NIWOT_calibration_flight_08_2020/polygon_spectra.csv\n"
+     ]
+    }
+   ],
+   "source": [
+    "import os\n",
+    "import pandas as pd\n",
+    "import glob\n",
+    "\n",
+    "def consolidate_polygons_to_master_csv(parent_directory):\n",
+    "    \"\"\"\n",
+    "    Searches each subfolder within the given directory for files matching '*_polygons_merged.csv',\n",
+    "    concatenates them into a master DataFrame with an additional column for the folder name,\n",
+    "    and saves the consolidated DataFrame as 'polygon_spectra.csv' in the parent directory.\n",
+    "\n",
+    "    Parameters:\n",
+    "    - parent_directory (str): The directory containing subfolders to search.\n",
+    "    \"\"\"\n",
+    "    all_data_frames = []\n",
+    "\n",
+    "    # Iterate through each subfolder in the parent directory\n",
+    "    for folder_name in os.listdir(parent_directory):\n",
+    "        folder_path = os.path.join(parent_directory, folder_name)\n",
+    "        \n",
+    "        if os.path.isdir(folder_path):\n",
+    "            # Find all *_polygons_merged.csv files in the subfolder\n",
+    "            csv_files = glob.glob(os.path.join(folder_path, '*_polygons_merged.csv'))\n",
+    "            \n",
+    "            for csv_file in csv_files:\n",
+    "                # Load the CSV file into a DataFrame\n",
+    "                df = pd.read_csv(csv_file)\n",
+    "                # Add a column for the folder name\n",
+    "                df['Flight_line'] = folder_name\n",
+    "                # Append the DataFrame to the list\n",
+    "                all_data_frames.append(df)\n",
+    "\n",
+    "    # Concatenate all DataFrames into a master DataFrame\n",
+    "    if all_data_frames:\n",
+    "        master_df = pd.concat(all_data_frames, ignore_index=True)\n",
+    "        # Save the master DataFrame to polygon_spectra.csv in the parent directory\n",
+    "        output_csv_path = os.path.join(parent_directory, 'polygon_spectra.csv')\n",
+    "        master_df.to_csv(output_csv_path, index=False)\n",
+    "        print(f\"Master CSV saved to {output_csv_path}\")\n",
+    "    else:\n",
+    "        print(\"No *_polygons_merged.csv files found in subfolders.\")\n",
+    "\n",
+    "# Example usage\n",
+    "\n",
+    "consolidate_polygons_to_master_csv(parent_directory)\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 24,
+   "id": "63316dea-d8f8-4e42-bb84-d2cdfc8ae3c5",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "/tmp/ipykernel_111792/181018150.py:7: DtypeWarning: Columns (7,10,13,14,19,21) have mixed types. Specify dtype option on import or set low_memory=False.\n",
+      "  df = pd.read_csv(csv_file_path)\n"
+     ]
+    },
+    {
+     "data": {
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>Pixel_Row</th>\n",
+       "      <th>Pixel_Col</th>\n",
+       "      <th>GlobalID</th>\n",
+       "      <th>CreationDate</th>\n",
+       "      <th>Creator</th>\n",
+       "      <th>EditDate</th>\n",
+       "      <th>Editor</th>\n",
+       "      <th>description_notes</th>\n",
+       "      <th>dbh</th>\n",
+       "      <th>tree_height</th>\n",
+       "      <th>...</th>\n",
+       "      <th>Landsat_8_band_4</th>\n",
+       "      <th>Landsat_8_band_5</th>\n",
+       "      <th>Landsat_8_band_6</th>\n",
+       "      <th>Landsat_9_band_1</th>\n",
+       "      <th>Landsat_9_band_2</th>\n",
+       "      <th>Landsat_9_band_3</th>\n",
+       "      <th>Landsat_9_band_4</th>\n",
+       "      <th>Landsat_9_band_5</th>\n",
+       "      <th>Landsat_9_band_6</th>\n",
+       "      <th>Flight_line</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>0</th>\n",
+       "      <td>1222</td>\n",
+       "      <td>554</td>\n",
+       "      <td>{E9346797-777A-4D43-BD01-02A511C57DAA}</td>\n",
+       "      <td>2023-06-20 19:27:29+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>2023-06-20T19:27:29+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>2559.932534</td>\n",
+       "      <td>729.276808</td>\n",
+       "      <td>235.844050</td>\n",
+       "      <td>150.485106</td>\n",
+       "      <td>227.386952</td>\n",
+       "      <td>144.670011</td>\n",
+       "      <td>2559.932534</td>\n",
+       "      <td>729.276808</td>\n",
+       "      <td>235.844050</td>\n",
+       "      <td>NEON_D13_NIWO_DP1_20200801_161441_reflectance</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>1</th>\n",
+       "      <td>1222</td>\n",
+       "      <td>555</td>\n",
+       "      <td>{E9346797-777A-4D43-BD01-02A511C57DAA}</td>\n",
+       "      <td>2023-06-20 19:27:29+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>2023-06-20T19:27:29+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>2316.964286</td>\n",
+       "      <td>677.671657</td>\n",
+       "      <td>213.190474</td>\n",
+       "      <td>130.234725</td>\n",
+       "      <td>187.391979</td>\n",
+       "      <td>114.967046</td>\n",
+       "      <td>2316.964286</td>\n",
+       "      <td>677.671657</td>\n",
+       "      <td>213.190474</td>\n",
+       "      <td>NEON_D13_NIWO_DP1_20200801_161441_reflectance</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>2</th>\n",
+       "      <td>1223</td>\n",
+       "      <td>554</td>\n",
+       "      <td>{E9346797-777A-4D43-BD01-02A511C57DAA}</td>\n",
+       "      <td>2023-06-20 19:27:29+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>2023-06-20T19:27:29+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>3274.149362</td>\n",
+       "      <td>911.557229</td>\n",
+       "      <td>295.761100</td>\n",
+       "      <td>177.427782</td>\n",
+       "      <td>295.826530</td>\n",
+       "      <td>195.855862</td>\n",
+       "      <td>3274.149362</td>\n",
+       "      <td>911.557229</td>\n",
+       "      <td>295.761100</td>\n",
+       "      <td>NEON_D13_NIWO_DP1_20200801_161441_reflectance</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>3</th>\n",
+       "      <td>1223</td>\n",
+       "      <td>555</td>\n",
+       "      <td>{E9346797-777A-4D43-BD01-02A511C57DAA}</td>\n",
+       "      <td>2023-06-20 19:27:29+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>2023-06-20T19:27:29+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>3048.000241</td>\n",
+       "      <td>919.375727</td>\n",
+       "      <td>302.883800</td>\n",
+       "      <td>165.633962</td>\n",
+       "      <td>261.292609</td>\n",
+       "      <td>171.173423</td>\n",
+       "      <td>3048.000241</td>\n",
+       "      <td>919.375727</td>\n",
+       "      <td>302.883800</td>\n",
+       "      <td>NEON_D13_NIWO_DP1_20200801_161441_reflectance</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>4</th>\n",
+       "      <td>1224</td>\n",
+       "      <td>558</td>\n",
+       "      <td>{54D1A59F-2B5C-4D76-913A-690314E314A7}</td>\n",
+       "      <td>2023-06-20 19:28:37+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>2023-06-20T19:28:37+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>2242.813980</td>\n",
+       "      <td>852.598010</td>\n",
+       "      <td>344.220227</td>\n",
+       "      <td>165.620471</td>\n",
+       "      <td>243.318364</td>\n",
+       "      <td>176.134124</td>\n",
+       "      <td>2242.813980</td>\n",
+       "      <td>852.598010</td>\n",
+       "      <td>344.220227</td>\n",
+       "      <td>NEON_D13_NIWO_DP1_20200801_161441_reflectance</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>...</th>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "      <td>...</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>14485</th>\n",
+       "      <td>3895</td>\n",
+       "      <td>799</td>\n",
+       "      <td>{C7FA2D22-8033-4D92-A756-1299D67986B4}</td>\n",
+       "      <td>2023-06-13 16:03:03+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>2023-06-13T16:03:03+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>2608.009818</td>\n",
+       "      <td>1120.970482</td>\n",
+       "      <td>574.358940</td>\n",
+       "      <td>209.718434</td>\n",
+       "      <td>450.654481</td>\n",
+       "      <td>350.527043</td>\n",
+       "      <td>2608.009818</td>\n",
+       "      <td>1120.970482</td>\n",
+       "      <td>574.358940</td>\n",
+       "      <td>NEON_D13_NIWO_DP1_20200807_163444_reflectance</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>14486</th>\n",
+       "      <td>3895</td>\n",
+       "      <td>800</td>\n",
+       "      <td>{C7FA2D22-8033-4D92-A756-1299D67986B4}</td>\n",
+       "      <td>2023-06-13 16:03:03+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>2023-06-13T16:03:03+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>2618.926013</td>\n",
+       "      <td>1125.762646</td>\n",
+       "      <td>576.686649</td>\n",
+       "      <td>210.389938</td>\n",
+       "      <td>452.442482</td>\n",
+       "      <td>352.189134</td>\n",
+       "      <td>2618.926013</td>\n",
+       "      <td>1125.762646</td>\n",
+       "      <td>576.686649</td>\n",
+       "      <td>NEON_D13_NIWO_DP1_20200807_163444_reflectance</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>14487</th>\n",
+       "      <td>3895</td>\n",
+       "      <td>801</td>\n",
+       "      <td>{C7FA2D22-8033-4D92-A756-1299D67986B4}</td>\n",
+       "      <td>2023-06-13 16:03:03+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>2023-06-13T16:03:03+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>2259.085294</td>\n",
+       "      <td>1435.186943</td>\n",
+       "      <td>765.169186</td>\n",
+       "      <td>239.016707</td>\n",
+       "      <td>474.551501</td>\n",
+       "      <td>423.244853</td>\n",
+       "      <td>2259.085294</td>\n",
+       "      <td>1435.186943</td>\n",
+       "      <td>765.169186</td>\n",
+       "      <td>NEON_D13_NIWO_DP1_20200807_163444_reflectance</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>14488</th>\n",
+       "      <td>3895</td>\n",
+       "      <td>802</td>\n",
+       "      <td>{C7FA2D22-8033-4D92-A756-1299D67986B4}</td>\n",
+       "      <td>2023-06-13 16:03:03+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>2023-06-13T16:03:03+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>1696.776515</td>\n",
+       "      <td>734.542505</td>\n",
+       "      <td>326.745070</td>\n",
+       "      <td>149.602721</td>\n",
+       "      <td>321.140541</td>\n",
+       "      <td>232.987153</td>\n",
+       "      <td>1696.776515</td>\n",
+       "      <td>734.542505</td>\n",
+       "      <td>326.745070</td>\n",
+       "      <td>NEON_D13_NIWO_DP1_20200807_163444_reflectance</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>14489</th>\n",
+       "      <td>3892</td>\n",
+       "      <td>792</td>\n",
+       "      <td>{4E5FD762-1FAA-4E10-9D08-97B812020D01}</td>\n",
+       "      <td>2023-06-13 16:03:49+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>2023-06-13T16:03:49+00:00</td>\n",
+       "      <td>Tyler.L.McIntosh_ucboulder</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>2134.770854</td>\n",
+       "      <td>2362.043863</td>\n",
+       "      <td>1549.487657</td>\n",
+       "      <td>320.706987</td>\n",
+       "      <td>553.750150</td>\n",
+       "      <td>620.544923</td>\n",
+       "      <td>2134.770854</td>\n",
+       "      <td>2362.043863</td>\n",
+       "      <td>1549.487657</td>\n",
+       "      <td>NEON_D13_NIWO_DP1_20200807_163444_reflectance</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "<p>14490 rows × 904 columns</p>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "       Pixel_Row  Pixel_Col                                GlobalID  \\\n",
+       "0           1222        554  {E9346797-777A-4D43-BD01-02A511C57DAA}   \n",
+       "1           1222        555  {E9346797-777A-4D43-BD01-02A511C57DAA}   \n",
+       "2           1223        554  {E9346797-777A-4D43-BD01-02A511C57DAA}   \n",
+       "3           1223        555  {E9346797-777A-4D43-BD01-02A511C57DAA}   \n",
+       "4           1224        558  {54D1A59F-2B5C-4D76-913A-690314E314A7}   \n",
+       "...          ...        ...                                     ...   \n",
+       "14485       3895        799  {C7FA2D22-8033-4D92-A756-1299D67986B4}   \n",
+       "14486       3895        800  {C7FA2D22-8033-4D92-A756-1299D67986B4}   \n",
+       "14487       3895        801  {C7FA2D22-8033-4D92-A756-1299D67986B4}   \n",
+       "14488       3895        802  {C7FA2D22-8033-4D92-A756-1299D67986B4}   \n",
+       "14489       3892        792  {4E5FD762-1FAA-4E10-9D08-97B812020D01}   \n",
+       "\n",
+       "                    CreationDate                     Creator  \\\n",
+       "0      2023-06-20 19:27:29+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "1      2023-06-20 19:27:29+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "2      2023-06-20 19:27:29+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "3      2023-06-20 19:27:29+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "4      2023-06-20 19:28:37+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "...                          ...                         ...   \n",
+       "14485  2023-06-13 16:03:03+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "14486  2023-06-13 16:03:03+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "14487  2023-06-13 16:03:03+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "14488  2023-06-13 16:03:03+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "14489  2023-06-13 16:03:49+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "\n",
+       "                        EditDate                      Editor  \\\n",
+       "0      2023-06-20T19:27:29+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "1      2023-06-20T19:27:29+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "2      2023-06-20T19:27:29+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "3      2023-06-20T19:27:29+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "4      2023-06-20T19:28:37+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "...                          ...                         ...   \n",
+       "14485  2023-06-13T16:03:03+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "14486  2023-06-13T16:03:03+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "14487  2023-06-13T16:03:03+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "14488  2023-06-13T16:03:03+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "14489  2023-06-13T16:03:49+00:00  Tyler.L.McIntosh_ucboulder   \n",
+       "\n",
+       "      description_notes  dbh  tree_height  ... Landsat_8_band_4  \\\n",
+       "0                   NaN  NaN          NaN  ...      2559.932534   \n",
+       "1                   NaN  NaN          NaN  ...      2316.964286   \n",
+       "2                   NaN  NaN          NaN  ...      3274.149362   \n",
+       "3                   NaN  NaN          NaN  ...      3048.000241   \n",
+       "4                   NaN  NaN          NaN  ...      2242.813980   \n",
+       "...                 ...  ...          ...  ...              ...   \n",
+       "14485               NaN  NaN          NaN  ...      2608.009818   \n",
+       "14486               NaN  NaN          NaN  ...      2618.926013   \n",
+       "14487               NaN  NaN          NaN  ...      2259.085294   \n",
+       "14488               NaN  NaN          NaN  ...      1696.776515   \n",
+       "14489               NaN  NaN          NaN  ...      2134.770854   \n",
+       "\n",
+       "      Landsat_8_band_5  Landsat_8_band_6 Landsat_9_band_1 Landsat_9_band_2  \\\n",
+       "0           729.276808        235.844050       150.485106       227.386952   \n",
+       "1           677.671657        213.190474       130.234725       187.391979   \n",
+       "2           911.557229        295.761100       177.427782       295.826530   \n",
+       "3           919.375727        302.883800       165.633962       261.292609   \n",
+       "4           852.598010        344.220227       165.620471       243.318364   \n",
+       "...                ...               ...              ...              ...   \n",
+       "14485      1120.970482        574.358940       209.718434       450.654481   \n",
+       "14486      1125.762646        576.686649       210.389938       452.442482   \n",
+       "14487      1435.186943        765.169186       239.016707       474.551501   \n",
+       "14488       734.542505        326.745070       149.602721       321.140541   \n",
+       "14489      2362.043863       1549.487657       320.706987       553.750150   \n",
+       "\n",
+       "      Landsat_9_band_3 Landsat_9_band_4 Landsat_9_band_5 Landsat_9_band_6  \\\n",
+       "0           144.670011      2559.932534       729.276808       235.844050   \n",
+       "1           114.967046      2316.964286       677.671657       213.190474   \n",
+       "2           195.855862      3274.149362       911.557229       295.761100   \n",
+       "3           171.173423      3048.000241       919.375727       302.883800   \n",
+       "4           176.134124      2242.813980       852.598010       344.220227   \n",
+       "...                ...              ...              ...              ...   \n",
+       "14485       350.527043      2608.009818      1120.970482       574.358940   \n",
+       "14486       352.189134      2618.926013      1125.762646       576.686649   \n",
+       "14487       423.244853      2259.085294      1435.186943       765.169186   \n",
+       "14488       232.987153      1696.776515       734.542505       326.745070   \n",
+       "14489       620.544923      2134.770854      2362.043863      1549.487657   \n",
+       "\n",
+       "                                         Flight_line  \n",
+       "0      NEON_D13_NIWO_DP1_20200801_161441_reflectance  \n",
+       "1      NEON_D13_NIWO_DP1_20200801_161441_reflectance  \n",
+       "2      NEON_D13_NIWO_DP1_20200801_161441_reflectance  \n",
+       "3      NEON_D13_NIWO_DP1_20200801_161441_reflectance  \n",
+       "4      NEON_D13_NIWO_DP1_20200801_161441_reflectance  \n",
+       "...                                              ...  \n",
+       "14485  NEON_D13_NIWO_DP1_20200807_163444_reflectance  \n",
+       "14486  NEON_D13_NIWO_DP1_20200807_163444_reflectance  \n",
+       "14487  NEON_D13_NIWO_DP1_20200807_163444_reflectance  \n",
+       "14488  NEON_D13_NIWO_DP1_20200807_163444_reflectance  \n",
+       "14489  NEON_D13_NIWO_DP1_20200807_163444_reflectance  \n",
+       "\n",
+       "[14490 rows x 904 columns]"
+      ]
+     },
+     "execution_count": 24,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "import pandas as pd\n",
+    "\n",
+    "# Specify the path to your 'polygon_spectra.csv' file\n",
+    "csv_file_path = 'NIWOT_calibration_flight_08_2020/polygon_spectra.csv'\n",
+    "\n",
+    "# Load the CSV file into a pandas DataFrame\n",
+    "df = pd.read_csv(csv_file_path)\n",
+    "\n",
+    "\n",
+    "\n",
+    "# If you're using Jupyter notebooks or a similar interactive environment,\n",
+    "# you can just type the DataFrame variable to render it as a table:\n",
+    "pd.DataFrame(df)\n",
+    "\n"
+   ]
   }
  ],
  "metadata": {
diff --git a/vignette.ipynb b/vignette.ipynb
index e12ca17..17cf905 100644
--- a/vignette.ipynb
+++ b/vignette.ipynb
@@ -344029,7 +344029,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 77,
    "id": "b51e2c89-f47b-46e8-8f78-f0cabda1a2d7",
    "metadata": {},
    "outputs": [
@@ -344053,6 +344053,14 @@
      },
      "metadata": {},
      "output_type": "display_data"
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Filtered data saved to NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200731_155024_reflectance/NEON_D13_NIWO_DP1_20200731_155024_reflectance_polygons.csv\n",
+      "Filtered data saved to NIWOT_calibration_flight_08_2020/NEON_D13_NIWO_DP1_20200731_155024_reflectance/NEON_D13_NIWO_DP1_20200731_155024_reflectance_polygons.csv\n"
+     ]
     }
    ],
    "source": [