unit_tests_pandas.yml

# This workflow will install Python dependencies, run tests the specified Python version
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Python tests for pandas 2.2

on:
  push:
    branches:
      - develop
      - develop-ref
      - feature_*
      - main_*
      - bugfix_*
      - issue_*
      - gha_*
    paths-ignore:
      - 'docs/**'
      - '.github/pull_request_template.md'
      - '.github/ISSUE_TEMPLATE/**'
      - '**/README.md'
      - '**/LICENSE.md'


  pull_request:
    types: [ opened, reopened, synchronize ]


jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: [ "3.10" ]

    steps:
      - uses: actions/checkout@v4
      - name: Set up Python ${{ matrix.python-version }} for pandas2.2 testing
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: Retrieve METcalcpy repository develop branch
        run: |
          /usr/bin/git clone https://github.com/dtcenter/METcalcpy
          cd METcalcpy
          /usr/bin/git checkout develop
          python -m pip install -e .


      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install pytest>=7.1.1
          python -m pip install pytest_benchmark
          python -m pip install netcdf4==1.6.2
          if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
          python -m pip install pandas==2.2
          python -m pip install pytest-cov

      #   Checking the branch name, not necessary but useful when setting things up.
      #     - name: Extract branch name
      #       shell: bash
      #       run: echo "##[set-output name=branch;]$(echo ${GITHUB_REF#refs/heads/})"
      #       id: extract_branch


      - name: Test with pytest with pandas2.2
        run: |
          echo "GITHUB wspace: $GITHUB_WORKSPACE"
          export PYTHONPATH=$GITHUB_WORKSPACE/:$GITHUB_WORKSPACE/METdbLoad:$GITHUB_WORKSPACE/METdbLoad/ush:$GITHUB_WORKSPACE/METreformat:$GITHUB_WORKSPACE/METreadnc
          echo "PYTHONPATH is $PYTHONPATH"
          cd $GITHUB_WORKSPACE/METreformat
          cd test
          pytest --cov 

          py.test test_reformatting.py -v -s
          cd $GITHUB_WORKSPACE/METreadnc
          cd test
          pytest test_readnc.py
          pytest --cov
          echo "Finished unit tests"

      - name: Archive benchmark results
        uses: actions/upload-artifact@v4
        with:
          name: benchmark-report
          path: /home/runner/work/METdataio/METdatio/METreformat/test/**