{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":331007635,"defaultBranch":"main","name":"graphium","ownerLogin":"datamol-io","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-01-19T14:30:46.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/74333689?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1721137646.0","currentOid":""},"activityList":{"items":[{"before":"d34ac601a46f1ed51d260c7a2f5b7f99b9ebad3b","after":"b1f2e8608ab69584b3941735d9a5ade1a8b9c8e1","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-17T20:47:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Removed unnecessary detach, that broke the loss","shortMessageHtmlLink":"Removed unnecessary detach, that broke the loss"}},{"before":"911dfe9544361abe527d3bc184c6175aa284f0c0","after":"d34ac601a46f1ed51d260c7a2f5b7f99b9ebad3b","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-17T20:09:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Removed cuda version restriction","shortMessageHtmlLink":"Removed cuda version restriction"}},{"before":"68b93610e6ec64d79f0ed6f33a3a14010bb2e4a0","after":"911dfe9544361abe527d3bc184c6175aa284f0c0","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-17T19:57:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"detaching preds","shortMessageHtmlLink":"detaching preds"}},{"before":"d8ba606bf55f0c8cc8963611a9e9ad21138a4ffc","after":"68b93610e6ec64d79f0ed6f33a3a14010bb2e4a0","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-17T19:55:01.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Restricting the numpy version due to issues with wandb","shortMessageHtmlLink":"Restricting the numpy version due to issues with wandb"}},{"before":"04fe66fed8dd30daa5d2820bb5e97c54700e32f7","after":"2f2d27af789ffba3be8325a0fd6cf26de6193d5d","ref":"refs/heads/bb/minimol","pushedAt":"2024-07-17T11:50:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"blazejba","name":"Błażej Banaszewski","path":"/blazejba","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/102740547?s=80&v=4"},"commit":{"message":"revert adding a new dependency","shortMessageHtmlLink":"revert adding a new dependency"}},{"before":"214231335c1bd0d93c1adbb87d9e7bb29316353f","after":"d8ba606bf55f0c8cc8963611a9e9ad21138a4ffc","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-16T21:32:36.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Fixed metric issues on gpu by casting to the right device prior to `.update`","shortMessageHtmlLink":"Fixed metric issues on gpu by casting to the right device prior to `.…"}},{"before":"5c421a65fd482f241fc89e28df75ee0f5c2507bd","after":"214231335c1bd0d93c1adbb87d9e7bb29316353f","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-16T19:25:16.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Added toymix training to the unit-tests. Also useful to run in debug mode.","shortMessageHtmlLink":"Added toymix training to the unit-tests. Also useful to run in debug …"}},{"before":"44b66b5f08e7af25d9cd8bc03fbf2d40620dd6cb","after":"5c421a65fd482f241fc89e28df75ee0f5c2507bd","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-16T15:57:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Fixed reversed preds/targets. Fixed random sampling to take in the DF idx. Few other minor changes","shortMessageHtmlLink":"Fixed reversed preds/targets. Fixed random sampling to take in the DF…"}},{"before":"a8e715ce45cfaa80eb4b38f919ec3265df9a9686","after":null,"ref":"refs/heads/analysis","pushedAt":"2024-07-16T13:47:26.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"WenkelF","name":"Frederik","path":"/WenkelF","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/45903652?s=80&v=4"}},{"before":"be99d946cf66a2ad0cfa94ff6f81e08f0537c78a","after":"44b66b5f08e7af25d9cd8bc03fbf2d40620dd6cb","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-15T22:20:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"fixed some issue with older version of torchmetrics","shortMessageHtmlLink":"fixed some issue with older version of torchmetrics"}},{"before":"8aa0f2b03caee658ece15ef84dcfea591050d60d","after":"be99d946cf66a2ad0cfa94ff6f81e08f0537c78a","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-15T21:16:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'origin/torchmetrics' into torchmetrics","shortMessageHtmlLink":"Merge remote-tracking branch 'origin/torchmetrics' into torchmetrics"}},{"before":"0d239cb293b96869230e9a65a3dc488d60480699","after":"d12df7e06828fa7d7f8792141d058a60b2b2d258","ref":"refs/heads/main","pushedAt":"2024-07-15T13:58:21.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Merge pull request #505 from graphcore-research/main\n\nremove Gradient links in README","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2181501156\" data-permission-text=\"Title is private\" data-url=\"https://github.com/datamol-io/graphium/issues/505\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/datamol-io/graphium/pull/505/hovercard\" href=\"https://github.com/datamol-io/graphium/pull/505\">#505</a> from graphcore-research/main"}},{"before":"10a10179cd4e4e1b1d0d15ba45b9e232ebbdfbeb","after":"8aa0f2b03caee658ece15ef84dcfea591050d60d","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-13T20:32:34.000Z","pushType":"push","commitsCount":56,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Merge branch 'graphium_3.0' into torchmetrics","shortMessageHtmlLink":"Merge branch 'graphium_3.0' into torchmetrics"}},{"before":"38d03e12d743813b260c6e8285ad5d188183c300","after":"10a10179cd4e4e1b1d0d15ba45b9e232ebbdfbeb","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-13T04:15:16.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Fixed predictor grad_norm","shortMessageHtmlLink":"Fixed predictor grad_norm"}},{"before":"0c93a0f22ad0ec9055cbd721feb2f423121bf75b","after":"38d03e12d743813b260c6e8285ad5d188183c300","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-12T22:01:03.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Implemented test of MultiTaskSummaries. Only an error left for the mean and std of preds and targets","shortMessageHtmlLink":"Implemented test of MultiTaskSummaries. Only an error left for the me…"}},{"before":"641fa37dd974157f14ee8748c2c0fb4aaabf75e3","after":"0c93a0f22ad0ec9055cbd721feb2f423121bf75b","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-12T19:26:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Changed to micromamba to install pytdc","shortMessageHtmlLink":"Changed to micromamba to install pytdc"}},{"before":"326b6e78b8202d88025fc20d74b0e286c588ed2e","after":"641fa37dd974157f14ee8748c2c0fb4aaabf75e3","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-12T19:06:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Fixed issue with building docs","shortMessageHtmlLink":"Fixed issue with building docs"}},{"before":"2441f4326826f6bc296871e15938ff15fb7b8941","after":"326b6e78b8202d88025fc20d74b0e286c588ed2e","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-12T19:02:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Woops","shortMessageHtmlLink":"Woops"}},{"before":"0fa2d86e1e63f4b361dc88ea2cb6a11a15246cac","after":"2441f4326826f6bc296871e15938ff15fb7b8941","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-12T19:01:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Added '--no-deps' to TDC installation in `test.yml`","shortMessageHtmlLink":"Added '--no-deps' to TDC installation in <code>test.yml</code>"}},{"before":"632d4dcbf03a2f6a5161b45b23ed317e305d3a7c","after":"0fa2d86e1e63f4b361dc88ea2cb6a11a15246cac","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-12T19:00:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Changed mamba install tdc to pip install, in the `test.yml` file","shortMessageHtmlLink":"Changed mamba install tdc to pip install, in the <code>test.yml</code> file"}},{"before":"b59428a53979aaf95dc345927f37a5a41b6fd04e","after":"632d4dcbf03a2f6a5161b45b23ed317e305d3a7c","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-12T18:56:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Added `pytdc` to the tests","shortMessageHtmlLink":"Added <code>pytdc</code> to the tests"}},{"before":"5d60fbf8ca590e9cdd1ec19d70574af82ca1f528","after":"b59428a53979aaf95dc345927f37a5a41b6fd04e","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-12T16:24:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Fixed some unit-tests that were broken by previous changes","shortMessageHtmlLink":"Fixed some unit-tests that were broken by previous changes"}},{"before":"5040c473720379a45d82f96cdead031e2b619415","after":"5d60fbf8ca590e9cdd1ec19d70574af82ca1f528","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-12T15:05:32.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Standardized the test names","shortMessageHtmlLink":"Standardized the test names"}},{"before":"6c58733475536ed5bfb6dad2704ab34b2b68caff","after":"5040c473720379a45d82f96cdead031e2b619415","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-11T21:40:50.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"fixed all errors arising in `test_finetuning.py`","shortMessageHtmlLink":"fixed all errors arising in <code>test_finetuning.py</code>"}},{"before":"ab88952738b818ee447b7f987c0b899c4adf5174","after":"6c58733475536ed5bfb6dad2704ab34b2b68caff","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-11T18:53:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Minor documentation","shortMessageHtmlLink":"Minor documentation"}},{"before":"7b89998c28b8cdd1a8aae9d2245848ad6009c73a","after":"ab88952738b818ee447b7f987c0b899c4adf5174","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-11T18:52:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Fixed the loading of a previous dummy model using older metrics by removing the metrics from the model","shortMessageHtmlLink":"Fixed the loading of a previous dummy model using older metrics by re…"}},{"before":"4372acefdaa5f8f73d49edd3d0caac9379be4589","after":"7b89998c28b8cdd1a8aae9d2245848ad6009c73a","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-11T13:48:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"duplicated some unit-test fixes from graphium_3.0 branch","shortMessageHtmlLink":"duplicated some unit-test fixes from graphium_3.0 branch"}},{"before":"f355eed406ac415708f8e4aaa1e0208552ca3f49","after":"4372acefdaa5f8f73d49edd3d0caac9379be4589","ref":"refs/heads/torchmetrics","pushedAt":"2024-07-10T22:00:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Fixed test_metrics. Moved lots of `spaces.py` imports to inner functions to avoid import loops","shortMessageHtmlLink":"Fixed test_metrics. Moved lots of <code>spaces.py</code> imports to inner functi…"}},{"before":"3efa7f106e6443f9213c498be115ced15556754d","after":"7f933b74bab330a2029898fd66aeb502f777fd6a","ref":"refs/heads/graphium_3.0","pushedAt":"2024-07-09T21:30:54.000Z","pushType":"pr_merge","commitsCount":55,"pusher":{"login":"DomInvivo","name":null,"path":"/DomInvivo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47570400?s=80&v=4"},"commit":{"message":"Merge pull request #510 from ndickson-nvidia/graphium_cpp\n\nAdded and integrated C++ graphium_cpp library, a Python module implem…","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2246167941\" data-permission-text=\"Title is private\" data-url=\"https://github.com/datamol-io/graphium/issues/510\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/datamol-io/graphium/pull/510/hovercard\" href=\"https://github.com/datamol-io/graphium/pull/510\">#510</a> from ndickson-nvidia/graphium_cpp"}},{"before":"54c25b950a8c0c89b4011b6d85cdfe76537e65bc","after":"04fe66fed8dd30daa5d2820bb5e97c54700e32f7","ref":"refs/heads/bb/minimol","pushedAt":"2024-07-02T15:46:52.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"blazejba","name":"Błażej Banaszewski","path":"/blazejba","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/102740547?s=80&v=4"},"commit":{"message":"allow accessing intermediate embeddings","shortMessageHtmlLink":"allow accessing intermediate embeddings"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEgkDhgwA","startCursor":null,"endCursor":null}},"title":"Activity · datamol-io/graphium"}