diff --git a/poetry.lock b/poetry.lock
index 5f15ca8f..f69b53f2 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -388,31 +388,6 @@ files = [
 [package.extras]
 dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
 
-[[package]]
-name = "backports-tempfile"
-version = "1.0"
-description = "Backport of new features in Python's tempfile module"
-optional = true
-python-versions = "*"
-files = [
-    {file = "backports.tempfile-1.0-py2.py3-none-any.whl", hash = "sha256:05aa50940946f05759696156a8c39be118169a0e0f94a49d0bb106503891ff54"},
-    {file = "backports.tempfile-1.0.tar.gz", hash = "sha256:1c648c452e8770d759bdc5a5e2431209be70d25484e1be24876cf2168722c762"},
-]
-
-[package.dependencies]
-"backports.weakref" = "*"
-
-[[package]]
-name = "backports-weakref"
-version = "1.0.post1"
-description = "Backport of new features in Python's weakref module"
-optional = true
-python-versions = "*"
-files = [
-    {file = "backports.weakref-1.0.post1-py2.py3-none-any.whl", hash = "sha256:81bc9b51c0abc58edc76aefbbc68c62a787918ffe943a37947e162c3f8e19e82"},
-    {file = "backports.weakref-1.0.post1.tar.gz", hash = "sha256:bc4170a29915f8b22c9e7c4939701859650f2eb84184aee80da329ac0b9825c2"},
-]
-
 [[package]]
 name = "beautifulsoup4"
 version = "4.12.3"
@@ -862,21 +837,21 @@ zstandard = ["zstandard"]
 
 [[package]]
 name = "cytominer-database"
-version = "0.3.4"
+version = "0.3.5"
 description = ""
 optional = true
 python-versions = "*"
 files = [
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-    {file = "cytominer_database-0.3.4.tar.gz", hash = "sha256:9e16bfe3f635e65d8725232f213a046fedda46f78b5b330fb2e33563eebff685"},
+    {file = "cytominer_database-0.3.5-py2.py3-none-any.whl", hash = "sha256:b80b7c7b08b8c555c3057ded834f2204dc1f7667eb9b410f4a1f996b62f3867f"},
+    {file = "cytominer_database-0.3.5.tar.gz", hash = "sha256:9dfd1e5c49d085656ce32e716a6d8e95b2b3418433e75aefae4662f1ca7da6ec"},
 ]
 
 [package.dependencies]
-"backports.tempfile" = ">=1.0rc1"
 click = ">=6.7"
 configparser = ">=3.5.0"
-csvkit = ">=1.0.2"
+csvkit = ">=1.0.2,<2"
 pandas = ">=0.20.3"
+pyarrow = "*"
 
 [[package]]
 name = "dbfread"
@@ -946,13 +921,13 @@ files = [
 
 [[package]]
 name = "dunamai"
-version = "1.22.0"
+version = "1.23.0"
 description = "Dynamic version generation"
 optional = false
 python-versions = ">=3.5"
 files = [
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-    {file = "dunamai-1.22.0.tar.gz", hash = "sha256:375a0b21309336f0d8b6bbaea3e038c36f462318c68795166e31f9873fdad676"},
+    {file = "dunamai-1.23.0-py3-none-any.whl", hash = "sha256:a0906d876e92441793c6a423e16a4802752e723e9c9a5aabdc5535df02dbe041"},
+    {file = "dunamai-1.23.0.tar.gz", hash = "sha256:a163746de7ea5acb6dacdab3a6ad621ebc612ed1e528aaa8beedb8887fccd2c4"},
 ]
 
 [package.dependencies]
@@ -2617,53 +2592,53 @@ tests = ["pytest"]
 
 [[package]]
 name = "pyarrow"
-version = "18.0.0"
+version = "18.1.0"
 description = "Python library for Apache Arrow"
 optional = false
 python-versions = ">=3.9"
 files = [
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+    {file = "pyarrow-18.1.0-cp39-cp39-manylinux_2_28_x86_64.whl", hash = "sha256:73eeed32e724ea3568bb06161cad5fa7751e45bc2228e33dcb10c614044165c7"},
+    {file = "pyarrow-18.1.0-cp39-cp39-win_amd64.whl", hash = "sha256:a1880dd6772b685e803011a6b43a230c23b566859a6e0c9a276c1e0faf4f4052"},
+    {file = "pyarrow-18.1.0.tar.gz", hash = "sha256:9386d3ca9c145b5539a1cfc75df07757dff870168c959b473a0bccbc3abc8c73"},
 ]
 
 [package.extras]
@@ -2697,13 +2672,13 @@ windows-terminal = ["colorama (>=0.4.6)"]
 
 [[package]]
 name = "pytest"
-version = "8.3.3"
+version = "8.3.4"
 description = "pytest: simple powerful testing with Python"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "pytest-8.3.3-py3-none-any.whl", hash = "sha256:a6853c7375b2663155079443d2e45de913a911a11d669df02a50814944db57b2"},
-    {file = "pytest-8.3.3.tar.gz", hash = "sha256:70b98107bd648308a7952b06e6ca9a50bc660be218d53c257cc1fc94fda10181"},
+    {file = "pytest-8.3.4-py3-none-any.whl", hash = "sha256:50e16d954148559c9a74109af1eaf0c945ba2d8f30f0a3d3335edde19788b6f6"},
+    {file = "pytest-8.3.4.tar.gz", hash = "sha256:965370d062bce11e73868e0335abac31b4d3de0e82f4007408d242b4f8610761"},
 ]
 
 [package.dependencies]
@@ -3150,28 +3125,29 @@ files = [
 
 [[package]]
 name = "ruff"
-version = "0.3.7"
+version = "0.8.1"
 description = "An extremely fast Python linter and code formatter, written in Rust."
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "ruff-0.3.7-py3-none-macosx_10_12_x86_64.whl", hash = "sha256:15a4d1cc1e64e556fa0d67bfd388fed416b7f3b26d5d1c3e7d192c897e39ba4b"},
-    {file = "ruff-0.3.7-py3-none-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d28bdf3d7dc71dd46929fafeec98ba89b7c3550c3f0978e36389b5631b793663"},
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+    {file = "ruff-0.8.1-py3-none-musllinux_1_2_x86_64.whl", hash = "sha256:d2c16e3508c8cc73e96aa5127d0df8913d2290098f776416a4b157657bee44c5"},
+    {file = "ruff-0.8.1-py3-none-win32.whl", hash = "sha256:93335cd7c0eaedb44882d75a7acb7df4b77cd7cd0d2255c93b28791716e81790"},
+    {file = "ruff-0.8.1-py3-none-win_amd64.whl", hash = "sha256:2954cdbe8dfd8ab359d4a30cd971b589d335a44d444b6ca2cb3d1da21b75e4b6"},
+    {file = "ruff-0.8.1-py3-none-win_arm64.whl", hash = "sha256:55873cc1a473e5ac129d15eccb3c008c096b94809d693fc7053f588b67822737"},
+    {file = "ruff-0.8.1.tar.gz", hash = "sha256:3583db9a6450364ed5ca3f3b4225958b24f78178908d5c4bc0f46251ccca898f"},
 ]
 
 [[package]]
@@ -3400,13 +3376,13 @@ test = ["cython (>=3.0)", "defusedxml (>=0.7.1)", "pytest (>=8.0)", "setuptools
 
 [[package]]
 name = "sphinx-autoapi"
-version = "3.3.3"
+version = "3.4.0"
 description = "Sphinx API documentation generator"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "sphinx_autoapi-3.3.3-py3-none-any.whl", hash = "sha256:5c7349b42d45a492a611cb81fb48583d5148e9eab7fc6b1f326dc9273b9191e3"},
-    {file = "sphinx_autoapi-3.3.3.tar.gz", hash = "sha256:c44fd719580e9a3684ff82019f4f7f39fc970e3030ffd325936654a6f4d31f22"},
+    {file = "sphinx_autoapi-3.4.0-py3-none-any.whl", hash = "sha256:4027fef2875a22c5f2a57107c71641d82f6166bf55beb407a47aaf3ef14e7b92"},
+    {file = "sphinx_autoapi-3.4.0.tar.gz", hash = "sha256:e6d5371f9411bbb9fca358c00a9e57aef3ac94cbfc5df4bab285946462f69e0c"},
 ]
 
 [package.dependencies]
@@ -4457,4 +4433,4 @@ collate = ["cytominer-database"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<3.13"
-content-hash = "77eac2a93568499519d095ca50f0c0fea2430d6e00e23da89b306eac310de449"
+content-hash = "994f5e292858c0a5e761a387866914179c85695eb0ea6ee17385e748a73f127d"
diff --git a/pyproject.toml b/pyproject.toml
index c5aa425e..94b8d28b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -61,7 +61,7 @@ boto3 = { version = ">=1.26.79", optional = true }
 fire = { version = ">=0.5.0", optional = true }
 
 # Extra dependencies for collate
-cytominer-database = { version = "0.3.4", optional = true }
+cytominer-database = { version = "0.3.5", optional = true }
 
 [tool.poetry.extras]
 cell-locations = [ "fsspec", "s3fs", "boto3", "fire" ]
@@ -76,7 +76,7 @@ codecov = ">=2.1.12"
 pytest-cov = ">=4.1,<7.0"
 pre-commit = ">=3.3.2"
 commitizen = ">=3.12,<5.0"
-ruff = ">=0.3.4,<0.8.0"
+ruff = ">=0.3.4,<0.9.0"
 mypy = "^1.11.2"
 types-openpyxl = "^3.1.5.20240918"
 pandas-stubs = [