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Document how to setup ec2 instance in AWS to run DeepProfiler #257

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shntnu opened this issue May 10, 2021 · 2 comments
Open

Document how to setup ec2 instance in AWS to run DeepProfiler #257

shntnu opened this issue May 10, 2021 · 2 comments

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@shntnu
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shntnu commented May 10, 2021

@jccaicedo and I concluded that docker is the way to go here/

@michaelbornholdt may need to experiment a bit but @jccaicedo feels it should mesh well.

That doesn't solve the problem with the primary issue that @michaelbornholdt was facing, which is installing the NVIDIA driver. The docs say that the recommended way to do so is to install cuda-drivers using a package manager.

But instead, a simpler, faster route is to use a DL AMI.

Note: @jccaicedo had previously maintained this but now recommends the approach above instead.

@michaelbornholdt if all this pans out as planned, please update the wiki with your notes.

@infominer
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@shntnu @michaelbornholdt @jccaicedo Hello, we're trying to run DeepProfiler on AWS using an EC2 instance. But keep running into Out of Memory issues? Any tips or documentation to help troubleshoot this. We're trying to run 20 384 well plates of images at once

@infominer
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Some more careful searching yielded this page, https://github.com/broadinstitute/neural-profiling/wiki/DeepProfiler
by @michaelbornholdt. Will have a look.

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