Error in totalsource_2[(j + 1), ] <- t(unknown_source_rarefy)

[awsdd]

Hello,

I have four sets of data that are derived from the same overall dataset. All four have identical metadata set up. Upon running the FEAST function I get the following error:

Error in totalsource_2[(j + 1), ] <- t(unknown_source_rarefy) :
number of items to replace is not a multiple of replacement length

This only occurs for three of the four sets of data; the other runs successfully.
I'm using the different_sources_flag = 1 argument; out of curiosity I changed this to 0 and FEAST then ran successfully (although obviously the analysis/results is then not correct for my data set up).

Do you have any suggestions as to why this error is occurring?
Many thanks

[liashenhav]

You may have NAs in you datasets... You can share your code and data and I'll try to replicate it.
[email protected].

Best,
Liat

[awsdd]

Thank you very much. I have sent an email with the code and data files. I can't find any NAs in them so it will be interesting to see if the issue replicates at your end.

[atancred]

Hi, i'm experiencing the same issue and i was wondering if you were able to find a solution.
I have no NA in my datasets.

Best,
Alessandra

[liashenhav]

Issue fixed in the source code. Please download the latest version of FEAST and try again.

Thanks,
Liat

[awsdd]

Thanks Liat, this seems to have solved the problem. Appreciate the fix.

Phoebe