diff --git a/environments/analysis3/environment.yml b/environments/analysis3/environment.yml index 6d4dc26..9097ae1 100644 --- a/environments/analysis3/environment.yml +++ b/environments/analysis3/environment.yml @@ -128,7 +128,7 @@ dependencies: - panel - xrft - git -- openmpi +- openmpi==4.1.6 - mpi4py - palettable - xlrd @@ -168,7 +168,7 @@ dependencies: - rasterstats - windrose - pyam -- pyarrow +- pyarrow>=16.1 - python-gist - celluloid - jags diff --git a/scripts/dev_prep.sh b/scripts/dev_prep.sh index 88b9067..51c437e 100644 --- a/scripts/dev_prep.sh +++ b/scripts/dev_prep.sh @@ -158,7 +158,7 @@ _initialise() { echo "Copying external files" for f in "${outside_files_to_copy[@]}"; do mkdir -p "${OVERLAY_BASE}"/$( dirname "${f#/g/}" ) - cp "${f}" "${OVERLAY_BASE}"/"${f#/g/}" + cp -r "${f}" "${OVERLAY_BASE}"/"${f#/g/}" done echo "Unsquashing unstable environment"