Install ecmwf_api_client. Pin ucx and openmpi to latest available ver…

…sion on Gadi. Pin pyarrow otherwise micromamba brings in a broken version
coecms · Jun 25, 2024 · 68c7a0d · 68c7a0d
1 parent 868b09c
commit 68c7a0d
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diff --git a/environments/analysis3/environment.yml b/environments/analysis3/environment.yml
@@ -128,7 +128,7 @@ dependencies:
 - panel
 - xrft
 - git
-- openmpi
+- openmpi==4.1.6
 - mpi4py
 - palettable
 - xlrd
@@ -168,7 +168,7 @@ dependencies:
 - rasterstats
 - windrose
 - pyam
-- pyarrow
+- pyarrow>=16.1
 - python-gist
 - celluloid
 - jags

diff --git a/scripts/dev_prep.sh b/scripts/dev_prep.sh
@@ -158,7 +158,7 @@ _initialise() {
     echo "Copying external files"
     for f in "${outside_files_to_copy[@]}"; do
         mkdir -p "${OVERLAY_BASE}"/$( dirname "${f#/g/}" )
-        cp "${f}" "${OVERLAY_BASE}"/"${f#/g/}"
+        cp -r "${f}" "${OVERLAY_BASE}"/"${f#/g/}"
     done
 
     echo "Unsquashing unstable environment"