.gitpod.yml

github:
  prebuilds:
    # enable for the master/default branch (defaults to true)
    master: true
    # enable for all branches in this repo (defaults to false)
    branches: true
    # enable for pull requests coming from this repo (defaults to true)
    pullRequests: true
    # enable for pull requests coming from forks (defaults to false)
    pullRequestsFromForks: true
    # add a "Review in Gitpod" button as a comment to pull requests (defaults to true)
    addComment: true
    # add a "Review in Gitpod" button to pull requests (defaults to false)
    addBadge: false
    # add a label once the prebuild is ready to pull requests (defaults to false)
    addLabel: prebuilt-in-gitpod

image:
  file: .gitpod.Dockerfile

# List the start up tasks. Learn more https://www.gitpod.io/docs/config-start-tasks/
tasks:
  - name: Web server up 
    command: npx browser-sync start -s -w -y --index Example.html --port 8000
    
  - name: Download Nextflow Tutorial
    init: |
      echo 'init script' # runs during prebuild
      curl -s https://get.nextflow.io | bash
      
      
    command: |
      export PATH=/workspace/Gitpod_test:$PATH
      sudo apt install  -y tree
      sudo apt install  -y graphviz
      nextflow info
      unset JAVA_TOOL_OPTIONS
      alias conda_activate=". /opt/conda/etc/profile.d/conda.sh; conda activate base"
      echo 'Starting workspace !'

# List the ports to expose. Learn more https://www.gitpod.io/docs/config-ports/
ports:
  - port: 8000
    
vscode:
  extensions:
   - nextflow.nextflow