From f08a05b26385b02d87eaa4c16f42053bd9b2dffe Mon Sep 17 00:00:00 2001
From: Sigit <chansigit@users.noreply.github.com>
Date: Wed, 31 Mar 2021 21:07:12 +0800
Subject: [PATCH] Update CentrifugeData.R

---
 CentrifugeData.R | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/CentrifugeData.R b/CentrifugeData.R
index 376c3d3..6614085 100644
--- a/CentrifugeData.R
+++ b/CentrifugeData.R
@@ -13,12 +13,12 @@ AddAugmentedAssay<- function(seu,
     return(seu)
 }
 
-CentrifugeData <- function(sub){
+CentrifugeData <- function(sub,meta.data.features){
     tic("generating new assay")
     sub <- NormalizeData(sub, normalization.method="LogNormalize", scale.factor=10000)
     sub <- FindVariableFeatures(sub,  selection.method = "vst", nfeatures = 2000)
     sub <- ScaleData(sub, features=VariableFeatures(sub))
-    sub <- AddAugmentedAssay(sub)
+    sub <- AddAugmentedAssay(sub,meta.data.features)
 
     DefaultAssay(sub)<-"AugRNA"
     sub <- RunPCA(sub,  npcs=30, features=VariableFeatures(sub,assay="AugRNA"),verbose=FALSE)