diff --git a/carveme/config.cfg b/carveme/config.cfg index dcd9970..cd4a9b5 100644 --- a/carveme/config.cfg +++ b/carveme/config.cfg @@ -9,8 +9,8 @@ unbalanced_metabolites = data/input/unbalanced_metabolites.csv manually_curated = data/input/manually_curated.csv [ncbi] -refseq = data/input/refseq_assembly_all.tsv.gz -genbank = data/input/genbank_assembly_all.tsv.gz +refseq = data/input/refseq_release_84.tsv.gz +genbank = data/input/genbank_release_221.tsv.gz [generated] folder = data/generated/ diff --git a/carveme/data/input/genbank_assembly_all.tsv.gz b/carveme/data/input/genbank_assembly_all.tsv.gz deleted file mode 100644 index a43777f..0000000 Binary files a/carveme/data/input/genbank_assembly_all.tsv.gz and /dev/null differ diff --git a/carveme/data/input/genbank_release_221.tsv.gz b/carveme/data/input/genbank_release_221.tsv.gz new file mode 100644 index 0000000..158a4ac Binary files /dev/null and b/carveme/data/input/genbank_release_221.tsv.gz differ diff --git a/carveme/data/input/refseq_assembly_all.tsv.gz b/carveme/data/input/refseq_assembly_all.tsv.gz deleted file mode 100644 index 7c71f95..0000000 Binary files a/carveme/data/input/refseq_assembly_all.tsv.gz and /dev/null differ diff --git a/carveme/data/input/refseq_release_84.tsv.gz b/carveme/data/input/refseq_release_84.tsv.gz new file mode 100644 index 0000000..d84c619 Binary files /dev/null and b/carveme/data/input/refseq_release_84.tsv.gz differ diff --git a/scripts/carveme_init b/scripts/carveme_init index 647e890..42eecc5 100755 --- a/scripts/carveme_init +++ b/scripts/carveme_init @@ -15,8 +15,8 @@ if __name__ == '__main__': downloads = [ 'data/input/bigg_proteins.faa', 'data/input/equilibrator_compounds.tsv.gz', - 'data/input/refseq_assembly_all.tsv.gz', - 'data/input/genbank_assembly_all.tsv.gz', + 'data/input/refseq_release_84.tsv.gz', + 'data/input/genbank_release_221.tsv.gz', 'data/generated/bigg_gprs.csv.gz', 'data/generated/model_specific_data.csv.gz', 'data/generated/universe_draft.xml.gz',