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At a certain point, the output remains in this state
In addition, t_coffee remains in process state S (interruptable sleep) consuming ~60GB of RAM. After several days of checking the process, it does not seem to move from there. I have tried restarting the alignment several times but it keeps stopping at the same point.
Do I have to leave it until it finishes?
Is it possible to estimate how long it may take? I have aligned other files with slightly smaller sizes a little below and I have not had this kind of problem. Could it be due to the large size difference (from 300aa to >13 000aa) ?
The text was updated successfully, but these errors were encountered:
First of all, thank you very much for your work and dedication, I really enjoy using the t_coffee suite.
I am running a multiple alignment of a fasta containing ~7500 sequences with these lengths:
These are the commands that I'm using:
At a certain point, the output remains in this state
In addition, t_coffee remains in process state S (interruptable sleep) consuming ~60GB of RAM. After several days of checking the process, it does not seem to move from there. I have tried restarting the alignment several times but it keeps stopping at the same point.
Do I have to leave it until it finishes?
Is it possible to estimate how long it may take? I have aligned other files with slightly smaller sizes a little below and I have not had this kind of problem. Could it be due to the large size difference (from 300aa to >13 000aa) ?
The text was updated successfully, but these errors were encountered: