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Implement SubImaging, SubSegmentation, MultiImaging and MultiSegmentation extractors #11

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alejoe91 opened this issue Aug 13, 2020 · 4 comments
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Implement SubImaging, SubSegmentation, MultiImaging and MultiSegmentation extractors #11

alejoe91 opened this issue Aug 13, 2020 · 4 comments
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@alejoe91 @CodyCBakerPhD
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enhancement New feature or request

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@alejoe91
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@bendichter @Saksham20
I think that next we have to implement these Extractors:

  • SubImagingExtractor: returns a new extractor either cropped in xy or in time
  • SubSegmentationExtractor: returns only ROI in a certain square (crops in space)
  • MultiImaging and MutiSegmentation --> to handle multiple planes

I think we can use the SI implementations as a reference :)
@alejoe91 alejoe91 added the enhancement New feature or request label Aug 13, 2020
@alejoe91 alejoe91 self-assigned this Aug 13, 2020
@bendichter
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bendichter commented Aug 13, 2020 •
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For SubExtractors, sometimes boundaries are not straight. This is supported by e.g. calciumImagingAnalysis here. Do we want to support that?

@alejoe91
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We could for the SegmentationExtractor, but not for the Imaging as retrieving frames and video assumes a rectangular shape

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ok, makes sense

@h-mayorquin h-mayorquin mentioned this issue Jul 20, 2022
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All tasks now completed as of #201

@CodyCBakerPhD CodyCBakerPhD self-assigned this Sep 6, 2022
@h-mayorquin h-mayorquin mentioned this issue Sep 19, 2023
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@bendichter @alejoe91 @CodyCBakerPhD