diff --git a/dockerfiles/neuroconv_latest_yaml_variable b/dockerfiles/neuroconv_latest_yaml_variable index ea411ee44..5500f14f0 100644 --- a/dockerfiles/neuroconv_latest_yaml_variable +++ b/dockerfiles/neuroconv_latest_yaml_variable @@ -1,4 +1,4 @@ FROM ghcr.io/catalystneuro/neuroconv:latest LABEL org.opencontainers.image.source=https://github.com/catalystneuro/neuroconv LABEL org.opencontainers.image.description="A docker image for the most recent official release of the NeuroConv package. Modified to take in environment variables for the YAML conversion specification and other command line arguments." -CMD echo "$NEUROCONV_YAML" > run.yml && python -m neuroconv run.yml --data-folder-path "$NEUROCONV_DATA_PATH" --output-folder-path "$NEUROCONV_OUTPUT_PATH" --overwrite +CMD printf "$NEUROCONV_YAML" > ./run.yml && neuroconv run.yml --data-folder-path "$NEUROCONV_DATA_PATH" --output-folder-path "$NEUROCONV_OUTPUT_PATH" --overwrite