qtl_coloc_template.bsub

#Run Coloc on all of the Tissue-gene pairs from the CSV
#BSUB -J ColocQuiaL 
#BSUB -o SNPNUMBER_TRAITNAME_COLOC.%J-%I.out
#BSUB -e SNPNUMBER_TRAITNAME_COLOC.%J-%I.err
#Send email notification when the job finishes
#BSUB -N
## otherwise, summary is written to the output file.

module load R/3.6.3
module load plink/1.90Beta4.5
module load htslib #or module load tabix
module load liftOver

Rscript ./colocquial.R