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Add exact_match_reads_col config in options.yaml #19

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gwaybio opened this issue May 12, 2021 · 0 comments
Open

Add exact_match_reads_col config in options.yaml #19

gwaybio opened this issue May 12, 2021 · 0 comments
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@gwaybio
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gwaybio commented May 12, 2021

This will be a required argument after merging broadinstitute/pooled-cell-painting-profiling-recipe#65

It will belong in the process-spots heading. For example:

  process-spots:
    perform: true
    force_overwrite: true
    image_cols:
      well: "Metadata_Well"
      site: "Metadata_Site"
      plate: "Metadata_Plate"
    barcode_cols:
      - Barcode_MatchedTo_Barcode
    gene_cols:
      - Barcode_MatchedTo_GeneCode
    location_cols:
      - Location_Center_X
      - Location_Center_Y
    spot_score_cols:
      - Barcode_MatchedTo_Score
    foci_cols:
      - Barcode_BarcodeCalled
      - Barcode_MatchedTo_ID
    exact_match_reads_col: "exact_match_reads_per_cell"
@gwaybio gwaybio added the bug Something isn't working label May 12, 2021
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