.pre-commit-config.yaml

---
repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.4.0
    hooks:
      - id: check-yaml
      - id: end-of-file-fixer
      - id: trailing-whitespace
  - repo: https://github.com/psf/black
    rev: 24.3.0 # This should be kept in sync with the version in requirements-dev.in
    hooks:
      - id: black
        language_version: python3
        files: gnomad_qc
  - repo: https://github.com/pre-commit/mirrors-autopep8
    rev: v2.0.2 # This should be kept in sync with the version in requirements-dev.in
    hooks:
      - id: autopep8
        args: ["--exit-code", "--in-place"]
        files: gnomad_qc
  - repo: https://github.com/pycqa/isort
    rev: 5.12.0 # This should be kept in sync with the version in requirements-dev.in
    hooks:
      - id: isort
        args: ["--profile", "black", "--filter-files"]
        files: gnomad_qc
  - repo: https://github.com/pycqa/pydocstyle
    rev: 6.3.0 # This should be kept in sync with the version in requirements-dev.in
    hooks:
      - id: pydocstyle
        exclude: ^gnomad_qc/v2|^docs/