diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index 8f05492..9a008b8 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -4,28 +4,26 @@
 
 # Required
 version: 2
-#
+
+# Set the version of Python and other tools you might need
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.11"
+    # You can also specify other tool versions:
+    # nodejs: "19"
+    # rust: "1.64"
+    # golang: "1.19"
+
 # Build documentation in the docs/ directory with Sphinx
 sphinx:
    configuration: docs/source/conf.py
-       
-       # submodules:
-       #   include: - docs/build/html/_modules/funpipe/bam.html
 
-submodules:
-   include:
-     - bam
-     - fasta
-   recursive: true 
-#                     
-# Optionally build your docs in additional formats such as PDF
+# If using Sphinx, optionally build your docs in additional formats such as PDF
 # formats:
 #    - pdf
-#
-# Optionally set the version of Python and requirements required to build your docs
+
+# Optionally declare the Python requirements required to build your docs
 python:
    install:
-     - requirements: requirements.txt
-     - method: setuptools
-       path: .
-
+   - requirements: docs/source/requirements.txt
\ No newline at end of file
diff --git a/readthedocs.yml b/readthedocs.yml
deleted file mode 100644
index 9a008b8..0000000
--- a/readthedocs.yml
+++ /dev/null
@@ -1,29 +0,0 @@
-# .readthedocs.yaml
-# Read the Docs configuration file
-# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
-
-# Required
-version: 2
-
-# Set the version of Python and other tools you might need
-build:
-  os: ubuntu-22.04
-  tools:
-    python: "3.11"
-    # You can also specify other tool versions:
-    # nodejs: "19"
-    # rust: "1.64"
-    # golang: "1.19"
-
-# Build documentation in the docs/ directory with Sphinx
-sphinx:
-   configuration: docs/source/conf.py
-
-# If using Sphinx, optionally build your docs in additional formats such as PDF
-# formats:
-#    - pdf
-
-# Optionally declare the Python requirements required to build your docs
-python:
-   install:
-   - requirements: docs/source/requirements.txt
\ No newline at end of file