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setup.py
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setup.py
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from setuptools import setup
from glob import glob
import unittest
def readme():
with open('README.md') as f:
return f.read()
def test_suite():
test_loader = unittest.TestLoader()
test_suite = test_loader.discover('tests', pattern='test_*.py')
return test_suite
setup(
name='funpipe',
version='0.1.0',
description='A pipeline for analyzing fungal genomic data',
long_description=readme(),
classifiers=[
'Intended Audience :: Science/Research',
'Development Status :: 3 - Alpha',
'License :: OSI Approved :: MIT License',
'Programming Language :: Python :: 3.4',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Natural Language :: English'
],
keywords=['bioinformatics'],
url='https://github.com/broadinstitute/funpipe',
project_urls={
'Bug tracker': 'https://github.com/broadinstitute/funpipe/issues',
'Documentation': 'https://github.com/broadinstitute/funpipe/README.md'
},
author='Xiao Li',
author_email='[email protected]',
license='MIT',
packages=['funpipe', 'funpipe.scripts'],
package_dir={
'funpipe': 'funpipe',
'funpipe.scripts': 'scripts'
},
install_requires=[
'argparse>=1.1', 'crimson>=0.4.0', 'pandas>=0.23.4',
'matplotlib>=3.0.2', 'seaborn>=0.9.0'
],
test_suite='setup.test_suite',
scripts=glob('scripts/*'),
include_package_data=True,
zip_safe=False
)
from setuptools import setup
from glob import glob
import unittest
def readme():
with open('README.md') as f:
return f.read()
def test_suite():
test_loader = unittest.TestLoader()
test_suite = test_loader.discover('tests', pattern='test_*.py')
return test_suite
setup(
name='funpipe',
version='0.1.0',
description='A pipeline for analyzing fungal genomic data',
long_description=readme(),
classifiers=[
'Intended Audience :: Science/Research',
'Development Status :: 3 - Alpha',
'License :: OSI Approved :: MIT License',
'Programming Language :: Python :: 3.4',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Natural Language :: English'
],
keywords=['bioinformatics'],
url='https://github.com/x-lab/funpipe',
project_urls={
'Bug tracker': 'https://github.com/x-lab/funpipe/issues',
'Documentation': 'https://github.com/x-lab/funpipe/README.md'
},
author='Xiao Li',
author_email='[email protected]',
license='MIT',
packages=['funpipe', 'funpipe.scripts'],
package_dir={
'funpipe': 'funpipe',
'funpipe.scripts': 'scripts'
},
install_requires=[
'argparse>=1.1', 'crimson>=0.4.0', 'pandas>=0.23.4',
'matplotlib>=3.0.2', 'seaborn>=0.9.0', 'numpy==1.15.4'
],
test_suite='setup.test_suite',
scripts=glob('scripts/*'),
include_package_data=True,
zip_safe=False,
)