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Confirmed this is a problem with brew installing one, specific formula and not every time you run brew? If it's a general brew problem please file this issue at https://github.com/Homebrew/brew/issues/new.
Ran brew update and retried your prior step?
Ran brew doctor, fixed all issues and retried your prior step?
Ran brew gist-logs <formula> (where <formula> is the name of the formula that failed) and included the output link?
If brew gist-logs didn't work: ran brew config and brew doctor and included their output with your issue?
I'm trying to install the latest version of tRNAscan-SE: brew install trnascan
Which fails with the following message:
==> Downloading http://trna.ucsc.edu/software/trnascan-se-2.0.11.tar.gz
Already downloaded: /Users/miguel/Library/Caches/Homebrew/downloads/adc41dd58bd9477ee5c19c4831481bcdf14134c43b3935711ac58a3e01d97241--trnascan-se-2.0.11.tar.gz
==> Installing trnascan from brewsci/bio
==> ./configure --prefix=/usr/local/Cellar/trnascan/2.0.11
==> make install
Last 15 lines from /Users/miguel/Library/Logs/Homebrew/trnascan/02.make:
sed -e 's,\@bindir\@,/usr/local/Cellar/trnascan/2.0.11/bin,g' -e 's,\@libdir\@,/usr/local/Cellar/trnascan/2.0.11/lib,g' -e 's,[@]PERL[@],/usr/bin/perl,g' -e 's,\@INFERNAL\@,,g' < ./tRNAscan-SE.src > tRNAscan-SE
chmod +x tRNAscan-SE
sed -e 's,\@bindir\@,/usr/local/Cellar/trnascan/2.0.11/bin,g' -e 's,\@libdir\@,/usr/local/Cellar/trnascan/2.0.11/lib,g' -e 's,[@]PERL[@],/usr/bin/perl,g' -e 's,\@INFERNAL\@,,g' < ./tRNAscan-SE.conf.src > tRNAscan-SE.conf
chmod +x tRNAscan-SE.conf
(CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /private/tmp/trnascan-20221128-1367-ojvt96/tRNAscan-SE-2.0/missing autoheader)
/private/tmp/trnascan-20221128-1367-ojvt96/tRNAscan-SE-2.0/missing: line 81: autoheader: command not found
WARNING: 'autoheader' is missing on your system.
You should only need it if you modified 'acconfig.h' or
'configure.ac' or m4 files included by 'configure.ac'.
The 'autoheader' program is part of the GNU Autoconf package:
<http://www.gnu.org/software/autoconf/>
It also requires GNU m4 and Perl in order to run:
<http://www.gnu.org/software/m4/>
<http://www.perl.org/>
make: *** [config.h.in] Error 127
Do not report this issue to Homebrew/brew or Homebrew/core!
The missing autoheader message seems to be a red herring:
> autoheader --version
autoheader (GNU Autoconf) 2.71
Copyright (C) 2021 Free Software Foundation, Inc.
License GPLv3+/Autoconf: GNU GPL version 3 or later
<https://gnu.org/licenses/gpl.html>, <https://gnu.org/licenses/exceptions.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Written by Roland McGrath and Akim Demaille.
However, just in case I reinstalled autoconf (brew reinstall autoconf) and reran brew install trnascan with the exact same result.
Any help with this would be greatly appreciated.
Thanks!!!
Miguel.
The text was updated successfully, but these errors were encountered:
brew install
ing one, specific formula and not every time you runbrew
? If it's a generalbrew
problem please file this issue at https://github.com/Homebrew/brew/issues/new.brew update
and retried your prior step?brew doctor
, fixed all issues and retried your prior step?brew gist-logs <formula>
(where<formula>
is the name of the formula that failed) and included the output link?brew gist-logs
didn't work: ranbrew config
andbrew doctor
and included their output with your issue?I'm trying to install the latest version of tRNAscan-SE:
brew install trnascan
Which fails with the following message:
This is the full log gist: https://gist.github.com/0ced1127535a04abd7e909996a07546c
The missing autoheader message seems to be a red herring:
However, just in case I reinstalled autoconf (
brew reinstall autoconf
) and reranbrew install trnascan
with the exact same result.Any help with this would be greatly appreciated.
Thanks!!!
Miguel.
The text was updated successfully, but these errors were encountered: