diff --git a/dev/.buildinfo b/dev/.buildinfo index 94ab366c..aa05b14c 100644 --- a/dev/.buildinfo +++ b/dev/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. 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d40ea2b7..6f9016d3 100644 --- a/dev/_static/documentation_options.js +++ b/dev/_static/documentation_options.js @@ -1,5 +1,5 @@ const DOCUMENTATION_OPTIONS = { - VERSION: '0.8', + VERSION: '0.8.1', LANGUAGE: 'en', COLLAPSE_INDEX: false, BUILDER: 'html', diff --git a/dev/api.html b/dev/api.html index 289c9253..ffc4adf1 100644 --- a/dev/api.html +++ b/dev/api.html @@ -8,7 +8,7 @@ -
<braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8149c400>
+<braindecode.datasets.base.BaseConcatDataset object at 0x7f3131378130>
In time series targets setup, targets variables are stored in mne.Raw object as channels
@@ -823,14 +823,14 @@
Training
epoch r2_train r2_valid train_loss valid_loss lr dur
------- ---------- ---------- ------------ ------------ ------ ------
- 1 -16.9036 -8.3098 2.5378 20.7346 0.0006 1.0870
- 2 -13.7536 -7.1257 1.9596 18.0738 0.0006 0.5969
- 3 -12.7771 -6.7413 1.6787 17.1884 0.0005 0.5724
- 4 -11.7976 -6.3917 1.5638 16.4413 0.0004 0.6026
- 5 -11.2720 -6.1845 1.4237 16.0095 0.0002 0.6533
- 6 -10.5744 -5.9208 1.3549 15.4433 0.0001 0.5924
- 7 -9.8236 -5.6185 1.3132 14.7797 0.0000 0.6048
- 8 -9.0650 -5.3051 1.3316 14.0882 0.0000 0.6093
+ 1 -16.9037 -8.3086 2.5378 20.7324 0.0006 0.5038
+ 2 -13.7539 -7.1244 1.9596 18.0720 0.0006 0.4052
+ 3 -12.7768 -6.7402 1.6787 17.1870 0.0005 0.4036
+ 4 -11.7970 -6.3910 1.5638 16.4409 0.0004 0.4095
+ 5 -11.2712 -6.1840 1.4237 16.0095 0.0002 0.4032
+ 6 -10.5735 -5.9203 1.3549 15.4436 0.0001 0.4052
+ 7 -9.8228 -5.6181 1.3132 14.7799 0.0000 0.4031
+ 8 -9.0643 -5.3047 1.3316 14.0884 0.0000 0.4024
Obtaining predictions and targets for the test, train, and validation dataset
@@ -940,8 +940,8 @@Total running time of the script: (1 minutes 55.097 seconds)
-Estimated memory usage: 810 MB
+Total running time of the script: (2 minutes 41.420 seconds)
+Estimated memory usage: 777 MB
epoch train_accuracy train_loss valid_acc valid_accuracy valid_loss lr dur
------- ---------------- ------------ ----------- ---------------- ------------ ------ ------
- 1 0.2500 1.6077 0.2500 0.2500 3.0178 0.0006 2.7489
- 2 0.2569 1.3809 0.2569 0.2569 2.1896 0.0005 2.3996
- 3 0.3021 1.2767 0.2569 0.2569 1.7959 0.0002 2.3702
- 4 0.3229 1.1763 0.2674 0.2674 1.6416 0.0000 2.3995
+ 1 0.2500 1.6077 0.2500 0.2500 3.0179 0.0006 1.7346
+ 2 0.2569 1.3809 0.2569 0.2569 2.1898 0.0005 1.5458
+ 3 0.3021 1.2767 0.2604 0.2604 1.7960 0.0002 1.5160
+ 4 0.3229 1.1763 0.2674 0.2674 1.6417 0.0000 1.5309
<class 'braindecode.classifier.EEGClassifier'>[initialized](
module_=============================================================================================================================================
@@ -841,8 +841,8 @@ Setting the data aug
-Total running time of the script: (0 minutes 21.750 seconds)
-Estimated memory usage: 468 MB
+Total running time of the script: (0 minutes 16.183 seconds)
+Estimated memory usage: 518 MB
-<braindecode.datasets.base.BaseConcatDataset object at 0x7f4b6393bc40>
+<braindecode.datasets.base.BaseConcatDataset object at 0x7f31313c03d0>
@@ -867,31 +867,31 @@ Training
epoch train_acc train_loss valid_acc valid_loss cp dur
------- ----------- ------------ ----------- ------------ ---- ------
- 1 0.5234 0.7013 0.6680 0.6320 + 1.5210
- 2 0.5938 0.7149 0.4880 0.8357 1.2055
- 3 0.4922 1.0039 0.6440 0.6172 + 1.1741
- 4 0.5234 0.7031 0.6120 0.5988 + 1.1792
- 5 0.5391 0.6751 0.5920 0.6208 1.1589
- 6 0.6719 0.6235 0.5840 0.6256 1.1662
- 7 0.6641 0.6315 0.6200 0.6109 1.1501
- 8 0.6562 0.6261 0.6480 0.5934 + 1.1736
- 9 0.6484 0.6235 0.6720 0.5778 + 1.1405
- 10 0.6562 0.6161 0.6920 0.5739 + 1.1579
- 11 0.6172 0.6322 0.7000 0.5788 1.1569
- 12 0.6172 0.6260 0.6840 0.5776 1.1694
- 13 0.6328 0.6427 0.6880 0.5794 1.1691
- 14 0.6562 0.5923 0.6800 0.5763 1.1791
- 15 0.6484 0.6193 0.6760 0.5727 + 1.1568
- 16 0.7344 0.5650 0.6760 0.5677 + 1.1645
- 17 0.7031 0.5943 0.7000 0.5627 + 1.1551
- 18 0.7578 0.5444 0.6960 0.5535 + 1.1598
- 19 0.7812 0.5250 0.7120 0.5440 + 1.1485
- 20 0.6641 0.5657 0.7160 0.5369 + 1.1501
- 21 0.7422 0.5285 0.7280 0.5309 + 1.1529
- 22 0.6797 0.5494 0.7200 0.5262 + 1.1672
- 23 0.6328 0.6264 0.7240 0.5229 + 1.1711
- 24 0.7031 0.5611 0.7120 0.5210 + 1.1790
- 25 0.7031 0.5018 0.7280 0.5204 + 1.1591
+ 1 0.5234 0.7013 0.6680 0.6320 + 1.1660
+ 2 0.5938 0.7149 0.4880 0.8358 0.8803
+ 3 0.4922 1.0040 0.6440 0.6172 + 0.8777
+ 4 0.5234 0.7031 0.6120 0.5990 + 0.8684
+ 5 0.5391 0.6751 0.5920 0.6213 0.8710
+ 6 0.6719 0.6227 0.5920 0.6263 0.8768
+ 7 0.6562 0.6309 0.6240 0.6117 0.8771
+ 8 0.6641 0.6272 0.6480 0.5950 + 0.8705
+ 9 0.6328 0.6238 0.6680 0.5797 + 0.8819
+ 10 0.6406 0.6177 0.6800 0.5746 + 0.9290
+ 11 0.6250 0.6323 0.7040 0.5787 0.8672
+ 12 0.6094 0.6281 0.6760 0.5772 0.8615
+ 13 0.6328 0.6422 0.6880 0.5790 0.8652
+ 14 0.6406 0.5920 0.6840 0.5765 0.8659
+ 15 0.6562 0.6170 0.6920 0.5730 + 0.8657
+ 16 0.7578 0.5608 0.6960 0.5676 + 0.8648
+ 17 0.6875 0.5936 0.7120 0.5612 + 0.8691
+ 18 0.7734 0.5472 0.7080 0.5500 + 0.8600
+ 19 0.7656 0.5245 0.7120 0.5400 + 0.8745
+ 20 0.6641 0.5641 0.7160 0.5333 + 0.8807
+ 21 0.7422 0.5307 0.7200 0.5272 + 0.8768
+ 22 0.7109 0.5499 0.7360 0.5211 + 0.8677
+ 23 0.6250 0.6259 0.7400 0.5164 + 0.8719
+ 24 0.7031 0.5712 0.7400 0.5120 + 0.8672
+ 25 0.7109 0.5030 0.7280 0.5120 0.8638
@@ -950,16 +950,16 @@ Inspecting pretext t
print(classification_report(y_true, y_pred))
-[[89 32]
- [42 87]]
+[[90 31]
+ [41 88]]
precision recall f1-score support
- 0.0 0.68 0.74 0.71 121
- 1.0 0.73 0.67 0.70 129
+ 0.0 0.69 0.74 0.71 121
+ 1.0 0.74 0.68 0.71 129
- accuracy 0.70 250
- macro avg 0.71 0.70 0.70 250
-weighted avg 0.71 0.70 0.70 250
+ accuracy 0.71 250
+ macro avg 0.71 0.71 0.71 250
+weighted avg 0.71 0.71 0.71 250
@@ -1019,26 +1019,26 @@ Using the learned re
https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression
n_iter_i = _check_optimize_result(
Sleep staging performance with logistic regression:
-Train bal acc: 0.8877
-Valid bal acc: 0.5425
-Test bal acc: 0.6449
+Train bal acc: 0.8924
+Valid bal acc: 0.5215
+Test bal acc: 0.6011
Results on test set:
-[[110 23 2 5 2]
- [ 8 74 9 2 16]
- [ 28 52 416 3 63]
- [ 0 0 53 52 0]
- [ 0 60 19 0 91]]
+[[107 26 3 4 2]
+ [ 7 75 9 2 16]
+ [ 70 60 350 2 80]
+ [ 0 0 55 50 0]
+ [ 0 77 14 0 79]]
precision recall f1-score support
- 0 0.75 0.77 0.76 142
- 1 0.35 0.68 0.47 109
- 2 0.83 0.74 0.78 562
- 3 0.84 0.50 0.62 105
- 4 0.53 0.54 0.53 170
+ 0 0.58 0.75 0.66 142
+ 1 0.32 0.69 0.43 109
+ 2 0.81 0.62 0.70 562
+ 3 0.86 0.48 0.61 105
+ 4 0.45 0.46 0.46 170
- accuracy 0.68 1088
- macro avg 0.66 0.64 0.63 1088
-weighted avg 0.73 0.68 0.69 1088
+ accuracy 0.61 1088
+ macro avg 0.60 0.60 0.57 1088
+weighted avg 0.68 0.61 0.62 1088
The balanced accuracy is much higher than chance-level (i.e., 20% for our
@@ -1066,7 +1066,7 @@
Using the learned re
/home/runner/work/braindecode/braindecode/examples/advanced_training/plot_relative_positioning.py:472: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead.
colors = cm.get_cmap('viridis', 5)(range(5))
-<matplotlib.legend.Legend object at 0x7f4b815150f0>
+<matplotlib.legend.Legend object at 0x7f312debfd60>
We see that there is sleep stage-related structure in the embedding. A
@@ -1123,8 +1123,8 @@
References
-Total running time of the script: (1 minutes 33.898 seconds)
-Estimated memory usage: 228 MB
+Total running time of the script: (1 minutes 20.215 seconds)
+Estimated memory usage: 165 MB
-Total running time of the script: (0 minutes 38.083 seconds)
-Estimated memory usage: 214 MB
+Total running time of the script: (0 minutes 25.154 seconds)
+Estimated memory usage: 112 MB
<braindecode.datasets.base.BaseConcatDataset object at 0x7f4b836e9cc0>
+<braindecode.datasets.base.BaseConcatDataset object at 0x7f3130e808b0>
@@ -777,16 +777,16 @@ Training
epoch train_bal_acc train_loss valid_acc valid_bal_acc valid_loss dur
------- --------------- ------------ ----------- --------------- ------------ ------
- 1 0.2136 1.5768 0.0888 0.2000 1.6372 2.0938
- 2 0.2036 1.4788 0.0888 0.2000 1.6676 1.9176
- 3 0.2324 1.4033 0.0966 0.2102 1.6337 1.9441
- 4 0.2888 1.3407 0.1149 0.2465 1.6790 1.8773
- 5 0.3993 1.2126 0.4517 0.4013 1.6235 3.4104
- 6 0.5294 1.0967 0.2768 0.4076 1.6179 1.8842
- 7 0.5755 0.9662 0.5927 0.5671 1.3686 1.9107
- 8 0.6251 0.8905 0.7076 0.5786 1.2948 1.9392
- 9 0.6877 0.8148 0.7154 0.5876 1.3442 1.9546
- 10 0.6995 0.7434 0.5274 0.5296 1.6187 1.9716
+ 1 0.2136 1.5768 0.0888 0.2000 1.6372 1.6288
+ 2 0.2036 1.4788 0.0888 0.2000 1.6676 1.5263
+ 3 0.2324 1.4033 0.0966 0.2102 1.6337 1.4958
+ 4 0.2888 1.3407 0.1149 0.2465 1.6790 1.4974
+ 5 0.3993 1.2126 0.4517 0.4013 1.6235 1.5035
+ 6 0.5294 1.0967 0.2768 0.4076 1.6179 1.4931
+ 7 0.5755 0.9662 0.5927 0.5671 1.3689 1.5038
+ 8 0.6251 0.8904 0.7076 0.5786 1.2952 1.5046
+ 9 0.6877 0.8148 0.7154 0.5876 1.3450 1.4988
+ 10 0.6860 0.7449 0.5196 0.5269 1.6322 1.5106
<class 'braindecode.classifier.EEGClassifier'>[initialized](
module_=Sequential(
@@ -856,13 +856,13 @@ Plot resultsTotal running time of the script: (2 minutes 15.335 seconds)
-Estimated memory usage: 11 MB
+Total running time of the script: (2 minutes 0.622 seconds)
+Estimated memory usage: 9 MB
<braindecode.datasets.base.BaseConcatDataset object at 0x7f4b83820b80>
+<braindecode.datasets.base.BaseConcatDataset object at 0x7f311dd5d7b0>
@@ -773,9 +773,9 @@ Training
epoch train_bal_acc train_loss valid_acc valid_bal_acc valid_loss dur
------- --------------- ------------ ----------- --------------- ------------ ------
- 1 0.1471 3.1814 0.3459 0.1795 3.4752 2.3149
- 2 0.2712 1.8820 0.1955 0.2186 2.1581 1.8598
- 3 0.4518 1.4974 0.2256 0.2200 4.2246 1.8489
+ 1 0.1471 3.1815 0.3459 0.1795 3.4748 2.2672
+ 2 0.2712 1.8805 0.1955 0.2186 2.1537 1.9725
+ 3 0.4550 1.4941 0.2256 0.2200 4.2159 1.9764
<class 'braindecode.classifier.EEGClassifier'>[initialized](
module_=Sequential(
@@ -1017,8 +1017,8 @@ ReferencesTotal running time of the script: (0 minutes 14.708 seconds)
-Estimated memory usage: 15 MB
+Total running time of the script: (0 minutes 12.868 seconds)
+Estimated memory usage: 11 MB
-<braindecode.datasets.sleep_physionet.SleepPhysionet object at 0x7f4b837f3fa0>
+<braindecode.datasets.sleep_physionet.SleepPhysionet object at 0x7f3130017cd0>
@@ -762,9 +762,9 @@ Training
return F.conv1d(input, weight, bias, self.stride,
epoch train_bal_acc train_loss valid_bal_acc valid_loss dur
------- --------------- ------------ --------------- ------------ ------
- 1 0.2040 1.6129 0.1707 1.5807 3.2757
- 2 0.2224 1.5430 0.1594 1.5866 2.6061
- 3 0.3464 1.4928 0.1853 1.6026 2.6227
+ 1 0.2040 1.6129 0.1707 1.5807 2.1839
+ 2 0.2224 1.5430 0.1594 1.5866 1.7164
+ 3 0.3464 1.4928 0.1853 1.6026 1.7267
<class 'braindecode.classifier.EEGClassifier'>[initialized](
module_=======================================================================================================================================================
@@ -973,8 +973,8 @@ ReferencesTotal running time of the script: (0 minutes 16.129 seconds)
-Estimated memory usage: 111 MB
+Total running time of the script: (0 minutes 11.166 seconds)
+Estimated memory usage: 78 MB
-Total running time of the script: (0 minutes 7.988 seconds)
+Total running time of the script: (0 minutes 6.988 seconds)
Estimated memory usage: 10 MB
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- 90%|█████████████████████████████████▎ | 46.0M/51.1M [00:45<00:05, 1.03MB/s]
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- 91%|█████████████████████████████████▌ | 46.3M/51.1M [00:45<00:04, 1.03MB/s]
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- 91%|█████████████████████████████████▊ | 46.7M/51.1M [00:45<00:04, 1.05MB/s]
- 92%|█████████████████████████████████▉ | 46.9M/51.1M [00:45<00:04, 1.05MB/s]
- 92%|██████████████████████████████████ | 47.0M/51.1M [00:46<00:04, 1.03MB/s]
- 92%|██████████████████████████████████ | 47.1M/51.1M [00:46<00:03, 1.03MB/s]
- 92%|██████████████████████████████████▏ | 47.2M/51.1M [00:46<00:03, 1.03MB/s]
- 93%|██████████████████████████████████▏ | 47.3M/51.1M [00:46<00:03, 1.03MB/s]
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- 93%|██████████████████████████████████▍ | 47.5M/51.1M [00:46<00:03, 1.02MB/s]
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- 94%|██████████████████████████████████▋ | 47.9M/51.1M [00:46<00:03, 1.02MB/s]
- 94%|██████████████████████████████████▋ | 48.0M/51.1M [00:47<00:03, 1.02MB/s]
- 94%|██████████████████████████████████▊ | 48.1M/51.1M [00:47<00:02, 1.03MB/s]
- 94%|██████████████████████████████████▉ | 48.2M/51.1M [00:47<00:02, 1.03MB/s]
- 95%|██████████████████████████████████▉ | 48.3M/51.1M [00:47<00:02, 1.04MB/s]
- 95%|███████████████████████████████████ | 48.4M/51.1M [00:47<00:02, 1.03MB/s]
- 95%|███████████████████████████████████▏ | 48.5M/51.1M [00:47<00:02, 1.03MB/s]
- 95%|███████████████████████████████████▏ | 48.7M/51.1M [00:47<00:02, 1.03MB/s]
- 95%|███████████████████████████████████▎ | 48.8M/51.1M [00:47<00:02, 1.05MB/s]
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- 96%|███████████████████████████████████▍ | 49.0M/51.1M [00:48<00:01, 1.08MB/s]
- 96%|███████████████████████████████████▌ | 49.1M/51.1M [00:48<00:01, 1.06MB/s]
- 96%|███████████████████████████████████▋ | 49.2M/51.1M [00:48<00:01, 1.05MB/s]
- 97%|███████████████████████████████████▋ | 49.3M/51.1M [00:48<00:01, 1.04MB/s]
- 97%|███████████████████████████████████▊ | 49.5M/51.1M [00:48<00:01, 1.03MB/s]
- 97%|███████████████████████████████████▉ | 49.6M/51.1M [00:48<00:01, 1.04MB/s]
- 97%|███████████████████████████████████▉ | 49.7M/51.1M [00:48<00:01, 1.03MB/s]
- 97%|████████████████████████████████████ | 49.8M/51.1M [00:48<00:01, 1.03MB/s]
- 98%|████████████████████████████████████ | 49.9M/51.1M [00:48<00:01, 1.03MB/s]
- 98%|████████████████████████████████████▏| 50.0M/51.1M [00:49<00:01, 1.01MB/s]
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+ 0%| | 115k/51.1M [00:00<00:45, 1.11MB/s]
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+ 1%|▎ | 344k/51.1M [00:00<00:46, 1.10MB/s]
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-Download complete in 51s (48.7 MB)
+100%|█████████████████████████████████████| 3.90k/3.90k [00:00<00:00, 23.4MB/s]
+Download complete in 46s (48.7 MB)
Extracting EDF parameters from /home/runner/mne_data/physionet-sleep-data/SC4001E0-PSG.edf...
EDF file detected
Setting channel info structure...
@@ -1114,8 +1087,8 @@
- Upper transition bandwidth: 7.50 Hz (-6 dB cutoff frequency: 33.75 Hz)
- Filter length: 45 samples (0.450 s)
-Writing /tmp/tmprkujhpaz/0/0-raw.fif
-Closing /tmp/tmprkujhpaz/0/0-raw.fif
+Writing /tmp/tmprqo1r57a/0/0-raw.fif
+Closing /tmp/tmprqo1r57a/0/0-raw.fif
[done]
Reading 0 ... 3260000 = 0.000 ... 32600.000 secs...
Filtering raw data in 1 contiguous segment
@@ -1130,38 +1103,38 @@
- Upper transition bandwidth: 7.50 Hz (-6 dB cutoff frequency: 33.75 Hz)
- Filter length: 45 samples (0.450 s)
-Writing /tmp/tmprkujhpaz/1/1-raw.fif
-Closing /tmp/tmprkujhpaz/1/1-raw.fif
+Writing /tmp/tmprqo1r57a/1/1-raw.fif
+Closing /tmp/tmprqo1r57a/1/1-raw.fif
[done]
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmprkujhpaz contains other subdirectories or files ['0'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmprqo1r57a contains other subdirectories or files ['0'].
warnings.warn(f'Chosen directory {path} contains other '
-Opening raw data file /tmp/tmprkujhpaz/0/0-raw.fif...
+Opening raw data file /tmp/tmprqo1r57a/0/0-raw.fif...
Isotrak not found
Range : 2884000 ... 5391000 = 28840.000 ... 53910.000 secs
Ready.
-Opening raw data file /tmp/tmprkujhpaz/1/1-raw.fif...
+Opening raw data file /tmp/tmprqo1r57a/1/1-raw.fif...
Isotrak not found
Range : 1975000 ... 5235000 = 19750.000 ... 52350.000 secs
Ready.
Reading 0 ... 2507000 = 0.000 ... 25070.000 secs...
-Writing /tmp/tmprkujhpaz/0/0-raw.fif
-Closing /tmp/tmprkujhpaz/0/0-raw.fif
+Writing /tmp/tmprqo1r57a/0/0-raw.fif
+Closing /tmp/tmprqo1r57a/0/0-raw.fif
[done]
/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:700: UserWarning: The number of saved datasets (1) does not match the number of existing subdirectories (2). You may now encounter a mix of differently preprocessed datasets!
warnings.warn(f"The number of saved datasets ({i_ds+1+offset}) "
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmprkujhpaz contains other subdirectories or files ['1'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmprqo1r57a contains other subdirectories or files ['1'].
warnings.warn(f'Chosen directory {path} contains other '
Reading 0 ... 3260000 = 0.000 ... 32600.000 secs...
-Writing /tmp/tmprkujhpaz/1/1-raw.fif
-Closing /tmp/tmprkujhpaz/1/1-raw.fif
+Writing /tmp/tmprqo1r57a/1/1-raw.fif
+Closing /tmp/tmprqo1r57a/1/1-raw.fif
[done]
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmprkujhpaz contains other subdirectories or files ['0'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmprqo1r57a contains other subdirectories or files ['0'].
warnings.warn(f'Chosen directory {path} contains other '
-Opening raw data file /tmp/tmprkujhpaz/0/0-raw.fif...
+Opening raw data file /tmp/tmprqo1r57a/0/0-raw.fif...
Isotrak not found
Range : 2884000 ... 5391000 = 28840.000 ... 53910.000 secs
Ready.
-Opening raw data file /tmp/tmprkujhpaz/1/1-raw.fif...
+Opening raw data file /tmp/tmprqo1r57a/1/1-raw.fif...
Isotrak not found
Range : 1975000 ... 5235000 = 19750.000 ... 52350.000 secs
Ready.
@@ -1173,19 +1146,19 @@
EDF file detected
Setting channel info structure...
Creating raw.info structure...
-Opening raw data file /tmp/tmp0g57aua5/0/0-raw.fif...
+Opening raw data file /tmp/tmp8bd4vm1l/0/0-raw.fif...
Isotrak not found
Range : 2884000 ... 5391000 = 28840.000 ... 53910.000 secs
Ready.
-Opening raw data file /tmp/tmp0g57aua5/1/1-raw.fif...
+Opening raw data file /tmp/tmp8bd4vm1l/1/1-raw.fif...
Isotrak not found
Range : 1975000 ... 5235000 = 19750.000 ... 52350.000 secs
Ready.
-Opening raw data file /tmp/tmp0g57aua5/0/0-raw.fif...
+Opening raw data file /tmp/tmp8bd4vm1l/0/0-raw.fif...
Isotrak not found
Range : 2884000 ... 5391000 = 28840.000 ... 53910.000 secs
Ready.
-Opening raw data file /tmp/tmp0g57aua5/1/1-raw.fif...
+Opening raw data file /tmp/tmp8bd4vm1l/1/1-raw.fif...
Isotrak not found
Range : 1975000 ... 5235000 = 19750.000 ... 52350.000 secs
Ready.
@@ -1252,8 +1225,8 @@
- Upper transition bandwidth: 7.50 Hz (-6 dB cutoff frequency: 33.75 Hz)
- Filter length: 45 samples (0.450 s)
-Writing /tmp/tmpej2cwuxz/0/0-raw.fif
-Closing /tmp/tmpej2cwuxz/0/0-raw.fif
+Writing /tmp/tmpmhmgkrsv/0/0-raw.fif
+Closing /tmp/tmpmhmgkrsv/0/0-raw.fif
[done]
Reading 0 ... 3260000 = 0.000 ... 32600.000 secs...
Filtering raw data in 1 contiguous segment
@@ -1268,38 +1241,38 @@
- Upper transition bandwidth: 7.50 Hz (-6 dB cutoff frequency: 33.75 Hz)
- Filter length: 45 samples (0.450 s)
-Writing /tmp/tmpej2cwuxz/1/1-raw.fif
-Closing /tmp/tmpej2cwuxz/1/1-raw.fif
+Writing /tmp/tmpmhmgkrsv/1/1-raw.fif
+Closing /tmp/tmpmhmgkrsv/1/1-raw.fif
[done]
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpej2cwuxz contains other subdirectories or files ['0'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpmhmgkrsv contains other subdirectories or files ['0'].
warnings.warn(f'Chosen directory {path} contains other '
-Opening raw data file /tmp/tmpej2cwuxz/0/0-raw.fif...
+Opening raw data file /tmp/tmpmhmgkrsv/0/0-raw.fif...
Isotrak not found
Range : 2884000 ... 5391000 = 28840.000 ... 53910.000 secs
Ready.
-Opening raw data file /tmp/tmpej2cwuxz/1/1-raw.fif...
+Opening raw data file /tmp/tmpmhmgkrsv/1/1-raw.fif...
Isotrak not found
Range : 1975000 ... 5235000 = 19750.000 ... 52350.000 secs
Ready.
Reading 0 ... 2507000 = 0.000 ... 25070.000 secs...
-Writing /tmp/tmpej2cwuxz/0/0-raw.fif
-Closing /tmp/tmpej2cwuxz/0/0-raw.fif
+Writing /tmp/tmpmhmgkrsv/0/0-raw.fif
+Closing /tmp/tmpmhmgkrsv/0/0-raw.fif
[done]
/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:700: UserWarning: The number of saved datasets (1) does not match the number of existing subdirectories (2). You may now encounter a mix of differently preprocessed datasets!
warnings.warn(f"The number of saved datasets ({i_ds+1+offset}) "
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpej2cwuxz contains other subdirectories or files ['1'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpmhmgkrsv contains other subdirectories or files ['1'].
warnings.warn(f'Chosen directory {path} contains other '
Reading 0 ... 3260000 = 0.000 ... 32600.000 secs...
-Writing /tmp/tmpej2cwuxz/1/1-raw.fif
-Closing /tmp/tmpej2cwuxz/1/1-raw.fif
+Writing /tmp/tmpmhmgkrsv/1/1-raw.fif
+Closing /tmp/tmpmhmgkrsv/1/1-raw.fif
[done]
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpej2cwuxz contains other subdirectories or files ['0'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpmhmgkrsv contains other subdirectories or files ['0'].
warnings.warn(f'Chosen directory {path} contains other '
-Opening raw data file /tmp/tmpej2cwuxz/0/0-raw.fif...
+Opening raw data file /tmp/tmpmhmgkrsv/0/0-raw.fif...
Isotrak not found
Range : 2884000 ... 5391000 = 28840.000 ... 53910.000 secs
Ready.
-Opening raw data file /tmp/tmpej2cwuxz/1/1-raw.fif...
+Opening raw data file /tmp/tmpmhmgkrsv/1/1-raw.fif...
Isotrak not found
Range : 1975000 ... 5235000 = 19750.000 ... 52350.000 secs
Ready.
@@ -1311,19 +1284,19 @@
EDF file detected
Setting channel info structure...
Creating raw.info structure...
-Opening raw data file /tmp/tmpjf9zhor8/0/0-raw.fif...
+Opening raw data file /tmp/tmp5_t3lhz9/0/0-raw.fif...
Isotrak not found
Range : 2884000 ... 5391000 = 28840.000 ... 53910.000 secs
Ready.
-Opening raw data file /tmp/tmpjf9zhor8/1/1-raw.fif...
+Opening raw data file /tmp/tmp5_t3lhz9/1/1-raw.fif...
Isotrak not found
Range : 1975000 ... 5235000 = 19750.000 ... 52350.000 secs
Ready.
-Opening raw data file /tmp/tmpjf9zhor8/0/0-raw.fif...
+Opening raw data file /tmp/tmp5_t3lhz9/0/0-raw.fif...
Isotrak not found
Range : 2884000 ... 5391000 = 28840.000 ... 53910.000 secs
Ready.
-Opening raw data file /tmp/tmpjf9zhor8/1/1-raw.fif...
+Opening raw data file /tmp/tmp5_t3lhz9/1/1-raw.fif...
Isotrak not found
Range : 1975000 ... 5235000 = 19750.000 ... 52350.000 secs
Ready.
@@ -1396,8 +1369,8 @@
Depending on available resources (e.g. in limited memory settings), it might
therefore be more advantageous to use both parallelization and serialization
together.
-Total running time of the script: (1 minutes 43.430 seconds)
-Estimated memory usage: 156 MB
+Total running time of the script: (1 minutes 27.521 seconds)
+Estimated memory usage: 240 MB
-Total running time of the script: (0 minutes 2.871 seconds)
-Estimated memory usage: 10 MB
+Total running time of the script: (0 minutes 2.209 seconds)
+Estimated memory usage: 9 MB
We save the dataset to a an existing directory. It will create a ‘.fif’ file
@@ -600,41 +600,41 @@
)
-Writing /tmp/tmpl8p_rszc/0/0-raw.fif
-Closing /tmp/tmpl8p_rszc/0/0-raw.fif
+Writing /tmp/tmpvkqehedo/0/0-raw.fif
+Closing /tmp/tmpvkqehedo/0/0-raw.fif
[done]
-Writing /tmp/tmpl8p_rszc/1/1-raw.fif
-Closing /tmp/tmpl8p_rszc/1/1-raw.fif
+Writing /tmp/tmpvkqehedo/1/1-raw.fif
+Closing /tmp/tmpvkqehedo/1/1-raw.fif
[done]
-Writing /tmp/tmpl8p_rszc/2/2-raw.fif
-Closing /tmp/tmpl8p_rszc/2/2-raw.fif
+Writing /tmp/tmpvkqehedo/2/2-raw.fif
+Closing /tmp/tmpvkqehedo/2/2-raw.fif
[done]
-Writing /tmp/tmpl8p_rszc/3/3-raw.fif
-Closing /tmp/tmpl8p_rszc/3/3-raw.fif
+Writing /tmp/tmpvkqehedo/3/3-raw.fif
+Closing /tmp/tmpvkqehedo/3/3-raw.fif
[done]
-Writing /tmp/tmpl8p_rszc/4/4-raw.fif
-Closing /tmp/tmpl8p_rszc/4/4-raw.fif
+Writing /tmp/tmpvkqehedo/4/4-raw.fif
+Closing /tmp/tmpvkqehedo/4/4-raw.fif
[done]
-Writing /tmp/tmpl8p_rszc/5/5-raw.fif
-Closing /tmp/tmpl8p_rszc/5/5-raw.fif
+Writing /tmp/tmpvkqehedo/5/5-raw.fif
+Closing /tmp/tmpvkqehedo/5/5-raw.fif
[done]
-Writing /tmp/tmpl8p_rszc/6/6-raw.fif
-Closing /tmp/tmpl8p_rszc/6/6-raw.fif
+Writing /tmp/tmpvkqehedo/6/6-raw.fif
+Closing /tmp/tmpvkqehedo/6/6-raw.fif
[done]
-Writing /tmp/tmpl8p_rszc/7/7-raw.fif
-Closing /tmp/tmpl8p_rszc/7/7-raw.fif
+Writing /tmp/tmpvkqehedo/7/7-raw.fif
+Closing /tmp/tmpvkqehedo/7/7-raw.fif
[done]
-Writing /tmp/tmpl8p_rszc/8/8-raw.fif
-Closing /tmp/tmpl8p_rszc/8/8-raw.fif
+Writing /tmp/tmpvkqehedo/8/8-raw.fif
+Closing /tmp/tmpvkqehedo/8/8-raw.fif
[done]
-Writing /tmp/tmpl8p_rszc/9/9-raw.fif
-Closing /tmp/tmpl8p_rszc/9/9-raw.fif
+Writing /tmp/tmpvkqehedo/9/9-raw.fif
+Closing /tmp/tmpvkqehedo/9/9-raw.fif
[done]
-Writing /tmp/tmpl8p_rszc/10/10-raw.fif
-Closing /tmp/tmpl8p_rszc/10/10-raw.fif
+Writing /tmp/tmpvkqehedo/10/10-raw.fif
+Closing /tmp/tmpvkqehedo/10/10-raw.fif
[done]
-Writing /tmp/tmpl8p_rszc/11/11-raw.fif
-Closing /tmp/tmpl8p_rszc/11/11-raw.fif
+Writing /tmp/tmpvkqehedo/11/11-raw.fif
+Closing /tmp/tmpvkqehedo/11/11-raw.fif
[done]
@@ -652,11 +652,11 @@
)
-Opening raw data file /tmp/tmpl8p_rszc/1/1-raw.fif...
+Opening raw data file /tmp/tmpvkqehedo/1/1-raw.fif...
Range : 0 ... 3868 = 0.000 ... 386.800 secs
Ready.
Reading 0 ... 3868 = 0.000 ... 386.800 secs...
-Opening raw data file /tmp/tmpl8p_rszc/3/3-raw.fif...
+Opening raw data file /tmp/tmpvkqehedo/3/3-raw.fif...
Range : 0 ... 3868 = 0.000 ... 386.800 secs
Ready.
Reading 0 ... 3868 = 0.000 ... 386.800 secs...
@@ -731,15 +731,15 @@
)
-Writing /tmp/tmpl8p_rszc/0/0-raw.fif
-Closing /tmp/tmpl8p_rszc/0/0-raw.fif
+Writing /tmp/tmpvkqehedo/0/0-raw.fif
+Closing /tmp/tmpvkqehedo/0/0-raw.fif
[done]
-Writing /tmp/tmpl8p_rszc/1/1-raw.fif
-Closing /tmp/tmpl8p_rszc/1/1-raw.fif
+Writing /tmp/tmpvkqehedo/1/1-raw.fif
+Closing /tmp/tmpvkqehedo/1/1-raw.fif
[done]
/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:700: UserWarning: The number of saved datasets (2) does not match the number of existing subdirectories (12). You may now encounter a mix of differently preprocessed datasets!
warnings.warn(f"The number of saved datasets ({i_ds+1+offset}) "
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpl8p_rszc contains other subdirectories or files ['8', '7', '10', '5', '4', '9', '3', '2', '6', '11'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpvkqehedo contains other subdirectories or files ['8', '7', '10', '5', '4', '9', '3', '2', '6', '11'].
warnings.warn(f'Chosen directory {path} contains other '
@@ -756,7 +756,7 @@
windows_dataset_loaded.description
-Opening raw data file /tmp/tmpl8p_rszc/0/0-raw.fif...
+Opening raw data file /tmp/tmpvkqehedo/0/0-raw.fif...
Range : 0 ... 3868 = 0.000 ... 386.800 secs
Ready.
@@ -797,8 +797,8 @@
-
Total running time of the script: (0 minutes 6.845 seconds)
-Estimated memory usage: 269 MB
+
Total running time of the script: (0 minutes 5.025 seconds)
+Estimated memory usage: 10 MB
-
Total running time of the script: (0 minutes 1.938 seconds)
-Estimated memory usage: 10 MB
+
Total running time of the script: (0 minutes 1.455 seconds)
+Estimated memory usage: 9 MB