diff --git a/dev/.buildinfo b/dev/.buildinfo index 94ab366c..aa05b14c 100644 --- a/dev/.buildinfo +++ b/dev/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. 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a/dev/_images/sphx_glr_plot_sleep_staging_eldele2021_thumb.png b/dev/_images/sphx_glr_plot_sleep_staging_eldele2021_thumb.png index 7d05661f..6897dd40 100644 Binary files a/dev/_images/sphx_glr_plot_sleep_staging_eldele2021_thumb.png and b/dev/_images/sphx_glr_plot_sleep_staging_eldele2021_thumb.png differ diff --git a/dev/_images/sphx_glr_plot_sleep_staging_usleep_001.png b/dev/_images/sphx_glr_plot_sleep_staging_usleep_001.png index 8fbae197..c758e3f8 100644 Binary files a/dev/_images/sphx_glr_plot_sleep_staging_usleep_001.png and b/dev/_images/sphx_glr_plot_sleep_staging_usleep_001.png differ diff --git a/dev/_images/sphx_glr_plot_sleep_staging_usleep_thumb.png b/dev/_images/sphx_glr_plot_sleep_staging_usleep_thumb.png index c690bff4..bc1405f7 100644 Binary files a/dev/_images/sphx_glr_plot_sleep_staging_usleep_thumb.png and b/dev/_images/sphx_glr_plot_sleep_staging_usleep_thumb.png differ diff --git a/dev/_static/documentation_options.js b/dev/_static/documentation_options.js index d40ea2b7..6f9016d3 100644 --- a/dev/_static/documentation_options.js +++ b/dev/_static/documentation_options.js @@ -1,5 +1,5 @@ const DOCUMENTATION_OPTIONS = { - VERSION: '0.8', + VERSION: '0.8.1', LANGUAGE: 'en', COLLAPSE_INDEX: false, BUILDER: 'html', diff --git a/dev/api.html b/dev/api.html index 289c9253..ffc4adf1 100644 --- a/dev/api.html +++ b/dev/api.html @@ -8,7 +8,7 @@ - API Reference — Braindecode 0.8 documentation + API Reference — Braindecode 0.8.1 documentation @@ -41,7 +41,7 @@ - + diff --git a/dev/auto_examples/advanced_training/index.html b/dev/auto_examples/advanced_training/index.html index c4dac0c2..ca3425b3 100644 --- a/dev/auto_examples/advanced_training/index.html +++ b/dev/auto_examples/advanced_training/index.html @@ -8,7 +8,7 @@ - Advanced neural network training strategies — Braindecode 0.8 documentation + Advanced neural network training strategies — Braindecode 0.8.1 documentation @@ -41,7 +41,7 @@ - + diff --git a/dev/auto_examples/advanced_training/plot_bcic_iv_4_ecog_cropped.html b/dev/auto_examples/advanced_training/plot_bcic_iv_4_ecog_cropped.html index 8a270cd0..07b70555 100644 --- a/dev/auto_examples/advanced_training/plot_bcic_iv_4_ecog_cropped.html +++ b/dev/auto_examples/advanced_training/plot_bcic_iv_4_ecog_cropped.html @@ -8,7 +8,7 @@ - Fingers flexion cropped decoding on BCIC IV 4 ECoG Dataset — Braindecode 0.8 documentation + Fingers flexion cropped decoding on BCIC IV 4 ECoG Dataset — Braindecode 0.8.1 documentation @@ -41,7 +41,7 @@ - + @@ -598,7 +598,7 @@

Preprocessingpreprocess(test_set, [Preprocessor('crop', tmin=0, tmax=24)], n_jobs=-1) -
<braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8149c400>
+
<braindecode.datasets.base.BaseConcatDataset object at 0x7f3131378130>
 

In time series targets setup, targets variables are stored in mne.Raw object as channels @@ -823,14 +823,14 @@

Training

  epoch    r2_train    r2_valid    train_loss    valid_loss      lr     dur
 -------  ----------  ----------  ------------  ------------  ------  ------
-      1    -16.9036     -8.3098        2.5378       20.7346  0.0006  1.0870
-      2    -13.7536     -7.1257        1.9596       18.0738  0.0006  0.5969
-      3    -12.7771     -6.7413        1.6787       17.1884  0.0005  0.5724
-      4    -11.7976     -6.3917        1.5638       16.4413  0.0004  0.6026
-      5    -11.2720     -6.1845        1.4237       16.0095  0.0002  0.6533
-      6    -10.5744     -5.9208        1.3549       15.4433  0.0001  0.5924
-      7     -9.8236     -5.6185        1.3132       14.7797  0.0000  0.6048
-      8     -9.0650     -5.3051        1.3316       14.0882  0.0000  0.6093
+      1    -16.9037     -8.3086        2.5378       20.7324  0.0006  0.5038
+      2    -13.7539     -7.1244        1.9596       18.0720  0.0006  0.4052
+      3    -12.7768     -6.7402        1.6787       17.1870  0.0005  0.4036
+      4    -11.7970     -6.3910        1.5638       16.4409  0.0004  0.4095
+      5    -11.2712     -6.1840        1.4237       16.0095  0.0002  0.4032
+      6    -10.5735     -5.9203        1.3549       15.4436  0.0001  0.4052
+      7     -9.8228     -5.6181        1.3132       14.7799  0.0000  0.4031
+      8     -9.0643     -5.3047        1.3316       14.0884  0.0000  0.4024
 

Obtaining predictions and targets for the test, train, and validation dataset

@@ -940,8 +940,8 @@

Plot Resultsplt.tight_layout()

-plot bcic iv 4 ecog cropped

Total running time of the script: (1 minutes 55.097 seconds)

-

Estimated memory usage: 810 MB

+plot bcic iv 4 ecog cropped

Total running time of the script: (2 minutes 41.420 seconds)

+

Estimated memory usage: 777 MB

  epoch    train_accuracy    train_loss    valid_acc    valid_accuracy    valid_loss      lr     dur
 -------  ----------------  ------------  -----------  ----------------  ------------  ------  ------
-      1            0.2500        1.6077       0.2500            0.2500        3.0178  0.0006  2.7489
-      2            0.2569        1.3809       0.2569            0.2569        2.1896  0.0005  2.3996
-      3            0.3021        1.2767       0.2569            0.2569        1.7959  0.0002  2.3702
-      4            0.3229        1.1763       0.2674            0.2674        1.6416  0.0000  2.3995
+      1            0.2500        1.6077       0.2500            0.2500        3.0179  0.0006  1.7346
+      2            0.2569        1.3809       0.2569            0.2569        2.1898  0.0005  1.5458
+      3            0.3021        1.2767       0.2604            0.2604        1.7960  0.0002  1.5160
+      4            0.3229        1.1763       0.2674            0.2674        1.6417  0.0000  1.5309
 
 <class 'braindecode.classifier.EEGClassifier'>[initialized](
   module_=============================================================================================================================================
@@ -841,8 +841,8 @@ 

Setting the data aug -

Total running time of the script: (0 minutes 21.750 seconds)

-

Estimated memory usage: 468 MB

+

Total running time of the script: (0 minutes 16.183 seconds)

+

Estimated memory usage: 518 MB

-
<braindecode.datasets.base.BaseConcatDataset object at 0x7f4b6393bc40>
+
<braindecode.datasets.base.BaseConcatDataset object at 0x7f31313c03d0>
 
@@ -867,31 +867,31 @@

Training
  epoch    train_acc    train_loss    valid_acc    valid_loss    cp     dur
 -------  -----------  ------------  -----------  ------------  ----  ------
-      1       0.5234        0.7013       0.6680        0.6320     +  1.5210
-      2       0.5938        0.7149       0.4880        0.8357        1.2055
-      3       0.4922        1.0039       0.6440        0.6172     +  1.1741
-      4       0.5234        0.7031       0.6120        0.5988     +  1.1792
-      5       0.5391        0.6751       0.5920        0.6208        1.1589
-      6       0.6719        0.6235       0.5840        0.6256        1.1662
-      7       0.6641        0.6315       0.6200        0.6109        1.1501
-      8       0.6562        0.6261       0.6480        0.5934     +  1.1736
-      9       0.6484        0.6235       0.6720        0.5778     +  1.1405
-     10       0.6562        0.6161       0.6920        0.5739     +  1.1579
-     11       0.6172        0.6322       0.7000        0.5788        1.1569
-     12       0.6172        0.6260       0.6840        0.5776        1.1694
-     13       0.6328        0.6427       0.6880        0.5794        1.1691
-     14       0.6562        0.5923       0.6800        0.5763        1.1791
-     15       0.6484        0.6193       0.6760        0.5727     +  1.1568
-     16       0.7344        0.5650       0.6760        0.5677     +  1.1645
-     17       0.7031        0.5943       0.7000        0.5627     +  1.1551
-     18       0.7578        0.5444       0.6960        0.5535     +  1.1598
-     19       0.7812        0.5250       0.7120        0.5440     +  1.1485
-     20       0.6641        0.5657       0.7160        0.5369     +  1.1501
-     21       0.7422        0.5285       0.7280        0.5309     +  1.1529
-     22       0.6797        0.5494       0.7200        0.5262     +  1.1672
-     23       0.6328        0.6264       0.7240        0.5229     +  1.1711
-     24       0.7031        0.5611       0.7120        0.5210     +  1.1790
-     25       0.7031        0.5018       0.7280        0.5204     +  1.1591
+      1       0.5234        0.7013       0.6680        0.6320     +  1.1660
+      2       0.5938        0.7149       0.4880        0.8358        0.8803
+      3       0.4922        1.0040       0.6440        0.6172     +  0.8777
+      4       0.5234        0.7031       0.6120        0.5990     +  0.8684
+      5       0.5391        0.6751       0.5920        0.6213        0.8710
+      6       0.6719        0.6227       0.5920        0.6263        0.8768
+      7       0.6562        0.6309       0.6240        0.6117        0.8771
+      8       0.6641        0.6272       0.6480        0.5950     +  0.8705
+      9       0.6328        0.6238       0.6680        0.5797     +  0.8819
+     10       0.6406        0.6177       0.6800        0.5746     +  0.9290
+     11       0.6250        0.6323       0.7040        0.5787        0.8672
+     12       0.6094        0.6281       0.6760        0.5772        0.8615
+     13       0.6328        0.6422       0.6880        0.5790        0.8652
+     14       0.6406        0.5920       0.6840        0.5765        0.8659
+     15       0.6562        0.6170       0.6920        0.5730     +  0.8657
+     16       0.7578        0.5608       0.6960        0.5676     +  0.8648
+     17       0.6875        0.5936       0.7120        0.5612     +  0.8691
+     18       0.7734        0.5472       0.7080        0.5500     +  0.8600
+     19       0.7656        0.5245       0.7120        0.5400     +  0.8745
+     20       0.6641        0.5641       0.7160        0.5333     +  0.8807
+     21       0.7422        0.5307       0.7200        0.5272     +  0.8768
+     22       0.7109        0.5499       0.7360        0.5211     +  0.8677
+     23       0.6250        0.6259       0.7400        0.5164     +  0.8719
+     24       0.7031        0.5712       0.7400        0.5120     +  0.8672
+     25       0.7109        0.5030       0.7280        0.5120        0.8638
 
@@ -950,16 +950,16 @@

Inspecting pretext t print(classification_report(y_true, y_pred))

-

The balanced accuracy is much higher than chance-level (i.e., 20% for our @@ -1066,7 +1066,7 @@

Using the learned re plot relative positioning
/home/runner/work/braindecode/braindecode/examples/advanced_training/plot_relative_positioning.py:472: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead.
   colors = cm.get_cmap('viridis', 5)(range(5))
 
-<matplotlib.legend.Legend object at 0x7f4b815150f0>
+<matplotlib.legend.Legend object at 0x7f312debfd60>
 

We see that there is sleep stage-related structure in the embedding. A @@ -1123,8 +1123,8 @@

References -

Total running time of the script: (1 minutes 33.898 seconds)

-

Estimated memory usage: 228 MB

+

Total running time of the script: (1 minutes 20.215 seconds)

+

Estimated memory usage: 165 MB

-plot bcic iv 4 ecog trial

Total running time of the script: (0 minutes 38.083 seconds)

-

Estimated memory usage: 214 MB

+plot bcic iv 4 ecog trial

Total running time of the script: (0 minutes 25.154 seconds)

+

Estimated memory usage: 112 MB

-
<braindecode.datasets.base.BaseConcatDataset object at 0x7f4b836e9cc0>
+
<braindecode.datasets.base.BaseConcatDataset object at 0x7f3130e808b0>
 
@@ -777,16 +777,16 @@

Training

  epoch    train_bal_acc    train_loss    valid_acc    valid_bal_acc    valid_loss     dur
 -------  ---------------  ------------  -----------  ---------------  ------------  ------
-      1           0.2136        1.5768       0.0888           0.2000        1.6372  2.0938
-      2           0.2036        1.4788       0.0888           0.2000        1.6676  1.9176
-      3           0.2324        1.4033       0.0966           0.2102        1.6337  1.9441
-      4           0.2888        1.3407       0.1149           0.2465        1.6790  1.8773
-      5           0.3993        1.2126       0.4517           0.4013        1.6235  3.4104
-      6           0.5294        1.0967       0.2768           0.4076        1.6179  1.8842
-      7           0.5755        0.9662       0.5927           0.5671        1.3686  1.9107
-      8           0.6251        0.8905       0.7076           0.5786        1.2948  1.9392
-      9           0.6877        0.8148       0.7154           0.5876        1.3442  1.9546
-     10           0.6995        0.7434       0.5274           0.5296        1.6187  1.9716
+      1           0.2136        1.5768       0.0888           0.2000        1.6372  1.6288
+      2           0.2036        1.4788       0.0888           0.2000        1.6676  1.5263
+      3           0.2324        1.4033       0.0966           0.2102        1.6337  1.4958
+      4           0.2888        1.3407       0.1149           0.2465        1.6790  1.4974
+      5           0.3993        1.2126       0.4517           0.4013        1.6235  1.5035
+      6           0.5294        1.0967       0.2768           0.4076        1.6179  1.4931
+      7           0.5755        0.9662       0.5927           0.5671        1.3689  1.5038
+      8           0.6251        0.8904       0.7076           0.5786        1.2952  1.5046
+      9           0.6877        0.8148       0.7154           0.5876        1.3450  1.4988
+     10           0.6860        0.7449       0.5196           0.5269        1.6322  1.5106
 
 <class 'braindecode.classifier.EEGClassifier'>[initialized](
   module_=Sequential(
@@ -856,13 +856,13 @@ 

Plot resultsTotal running time of the script: (2 minutes 15.335 seconds)

-

Estimated memory usage: 11 MB

+

Total running time of the script: (2 minutes 0.622 seconds)

+

Estimated memory usage: 9 MB

-
<braindecode.datasets.base.BaseConcatDataset object at 0x7f4b83820b80>
+
<braindecode.datasets.base.BaseConcatDataset object at 0x7f311dd5d7b0>
 
@@ -773,9 +773,9 @@

Training

  epoch    train_bal_acc    train_loss    valid_acc    valid_bal_acc    valid_loss     dur
 -------  ---------------  ------------  -----------  ---------------  ------------  ------
-      1           0.1471        3.1814       0.3459           0.1795        3.4752  2.3149
-      2           0.2712        1.8820       0.1955           0.2186        2.1581  1.8598
-      3           0.4518        1.4974       0.2256           0.2200        4.2246  1.8489
+      1           0.1471        3.1815       0.3459           0.1795        3.4748  2.2672
+      2           0.2712        1.8805       0.1955           0.2186        2.1537  1.9725
+      3           0.4550        1.4941       0.2256           0.2200        4.2159  1.9764
 
 <class 'braindecode.classifier.EEGClassifier'>[initialized](
   module_=Sequential(
@@ -1017,8 +1017,8 @@ 

ReferencesTotal running time of the script: (0 minutes 14.708 seconds)

-

Estimated memory usage: 15 MB

+

Total running time of the script: (0 minutes 12.868 seconds)

+

Estimated memory usage: 11 MB

-
<braindecode.datasets.sleep_physionet.SleepPhysionet object at 0x7f4b837f3fa0>
+
<braindecode.datasets.sleep_physionet.SleepPhysionet object at 0x7f3130017cd0>
 
@@ -762,9 +762,9 @@

Training return F.conv1d(input, weight, bias, self.stride, epoch train_bal_acc train_loss valid_bal_acc valid_loss dur ------- --------------- ------------ --------------- ------------ ------ - 1 0.2040 1.6129 0.1707 1.5807 3.2757 - 2 0.2224 1.5430 0.1594 1.5866 2.6061 - 3 0.3464 1.4928 0.1853 1.6026 2.6227 + 1 0.2040 1.6129 0.1707 1.5807 2.1839 + 2 0.2224 1.5430 0.1594 1.5866 1.7164 + 3 0.3464 1.4928 0.1853 1.6026 1.7267 <class 'braindecode.classifier.EEGClassifier'>[initialized]( module_======================================================================================================================================================= @@ -973,8 +973,8 @@

ReferencesTotal running time of the script: (0 minutes 16.129 seconds)

-

Estimated memory usage: 111 MB

+

Total running time of the script: (0 minutes 11.166 seconds)

+

Estimated memory usage: 78 MB

-

Total running time of the script: (0 minutes 7.988 seconds)

+

Total running time of the script: (0 minutes 6.988 seconds)

Estimated memory usage: 10 MB

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+  0%|                                      | 115k/51.1M [00:00<00:45, 1.11MB/s]
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-100%|██████████████████████████████████████| 51.1M/51.1M [00:00<00:00, 130GB/s]
+100%|██████████████████████████████████████| 51.1M/51.1M [00:00<00:00, 276GB/s]
 
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-100%|█████████████████████████████████████| 3.90k/3.90k [00:00<00:00, 22.4MB/s]
-Download complete in 51s (48.7 MB)
+100%|█████████████████████████████████████| 3.90k/3.90k [00:00<00:00, 23.4MB/s]
+Download complete in 46s (48.7 MB)
 Extracting EDF parameters from /home/runner/mne_data/physionet-sleep-data/SC4001E0-PSG.edf...
 EDF file detected
 Setting channel info structure...
@@ -1114,8 +1087,8 @@
 - Upper transition bandwidth: 7.50 Hz (-6 dB cutoff frequency: 33.75 Hz)
 - Filter length: 45 samples (0.450 s)
 
-Writing /tmp/tmprkujhpaz/0/0-raw.fif
-Closing /tmp/tmprkujhpaz/0/0-raw.fif
+Writing /tmp/tmprqo1r57a/0/0-raw.fif
+Closing /tmp/tmprqo1r57a/0/0-raw.fif
 [done]
 Reading 0 ... 3260000  =      0.000 ... 32600.000 secs...
 Filtering raw data in 1 contiguous segment
@@ -1130,38 +1103,38 @@
 - Upper transition bandwidth: 7.50 Hz (-6 dB cutoff frequency: 33.75 Hz)
 - Filter length: 45 samples (0.450 s)
 
-Writing /tmp/tmprkujhpaz/1/1-raw.fif
-Closing /tmp/tmprkujhpaz/1/1-raw.fif
+Writing /tmp/tmprqo1r57a/1/1-raw.fif
+Closing /tmp/tmprqo1r57a/1/1-raw.fif
 [done]
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmprkujhpaz contains other subdirectories or files ['0'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmprqo1r57a contains other subdirectories or files ['0'].
   warnings.warn(f'Chosen directory {path} contains other '
-Opening raw data file /tmp/tmprkujhpaz/0/0-raw.fif...
+Opening raw data file /tmp/tmprqo1r57a/0/0-raw.fif...
 Isotrak not found
     Range : 2884000 ... 5391000 =  28840.000 ... 53910.000 secs
 Ready.
-Opening raw data file /tmp/tmprkujhpaz/1/1-raw.fif...
+Opening raw data file /tmp/tmprqo1r57a/1/1-raw.fif...
 Isotrak not found
     Range : 1975000 ... 5235000 =  19750.000 ... 52350.000 secs
 Ready.
 Reading 0 ... 2507000  =      0.000 ... 25070.000 secs...
-Writing /tmp/tmprkujhpaz/0/0-raw.fif
-Closing /tmp/tmprkujhpaz/0/0-raw.fif
+Writing /tmp/tmprqo1r57a/0/0-raw.fif
+Closing /tmp/tmprqo1r57a/0/0-raw.fif
 [done]
 /home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:700: UserWarning: The number of saved datasets (1) does not match the number of existing subdirectories (2). You may now encounter a mix of differently preprocessed datasets!
   warnings.warn(f"The number of saved datasets ({i_ds+1+offset}) "
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmprkujhpaz contains other subdirectories or files ['1'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmprqo1r57a contains other subdirectories or files ['1'].
   warnings.warn(f'Chosen directory {path} contains other '
 Reading 0 ... 3260000  =      0.000 ... 32600.000 secs...
-Writing /tmp/tmprkujhpaz/1/1-raw.fif
-Closing /tmp/tmprkujhpaz/1/1-raw.fif
+Writing /tmp/tmprqo1r57a/1/1-raw.fif
+Closing /tmp/tmprqo1r57a/1/1-raw.fif
 [done]
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmprkujhpaz contains other subdirectories or files ['0'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmprqo1r57a contains other subdirectories or files ['0'].
   warnings.warn(f'Chosen directory {path} contains other '
-Opening raw data file /tmp/tmprkujhpaz/0/0-raw.fif...
+Opening raw data file /tmp/tmprqo1r57a/0/0-raw.fif...
 Isotrak not found
     Range : 2884000 ... 5391000 =  28840.000 ... 53910.000 secs
 Ready.
-Opening raw data file /tmp/tmprkujhpaz/1/1-raw.fif...
+Opening raw data file /tmp/tmprqo1r57a/1/1-raw.fif...
 Isotrak not found
     Range : 1975000 ... 5235000 =  19750.000 ... 52350.000 secs
 Ready.
@@ -1173,19 +1146,19 @@
 EDF file detected
 Setting channel info structure...
 Creating raw.info structure...
-Opening raw data file /tmp/tmp0g57aua5/0/0-raw.fif...
+Opening raw data file /tmp/tmp8bd4vm1l/0/0-raw.fif...
 Isotrak not found
     Range : 2884000 ... 5391000 =  28840.000 ... 53910.000 secs
 Ready.
-Opening raw data file /tmp/tmp0g57aua5/1/1-raw.fif...
+Opening raw data file /tmp/tmp8bd4vm1l/1/1-raw.fif...
 Isotrak not found
     Range : 1975000 ... 5235000 =  19750.000 ... 52350.000 secs
 Ready.
-Opening raw data file /tmp/tmp0g57aua5/0/0-raw.fif...
+Opening raw data file /tmp/tmp8bd4vm1l/0/0-raw.fif...
 Isotrak not found
     Range : 2884000 ... 5391000 =  28840.000 ... 53910.000 secs
 Ready.
-Opening raw data file /tmp/tmp0g57aua5/1/1-raw.fif...
+Opening raw data file /tmp/tmp8bd4vm1l/1/1-raw.fif...
 Isotrak not found
     Range : 1975000 ... 5235000 =  19750.000 ... 52350.000 secs
 Ready.
@@ -1252,8 +1225,8 @@
 - Upper transition bandwidth: 7.50 Hz (-6 dB cutoff frequency: 33.75 Hz)
 - Filter length: 45 samples (0.450 s)
 
-Writing /tmp/tmpej2cwuxz/0/0-raw.fif
-Closing /tmp/tmpej2cwuxz/0/0-raw.fif
+Writing /tmp/tmpmhmgkrsv/0/0-raw.fif
+Closing /tmp/tmpmhmgkrsv/0/0-raw.fif
 [done]
 Reading 0 ... 3260000  =      0.000 ... 32600.000 secs...
 Filtering raw data in 1 contiguous segment
@@ -1268,38 +1241,38 @@
 - Upper transition bandwidth: 7.50 Hz (-6 dB cutoff frequency: 33.75 Hz)
 - Filter length: 45 samples (0.450 s)
 
-Writing /tmp/tmpej2cwuxz/1/1-raw.fif
-Closing /tmp/tmpej2cwuxz/1/1-raw.fif
+Writing /tmp/tmpmhmgkrsv/1/1-raw.fif
+Closing /tmp/tmpmhmgkrsv/1/1-raw.fif
 [done]
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpej2cwuxz contains other subdirectories or files ['0'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpmhmgkrsv contains other subdirectories or files ['0'].
   warnings.warn(f'Chosen directory {path} contains other '
-Opening raw data file /tmp/tmpej2cwuxz/0/0-raw.fif...
+Opening raw data file /tmp/tmpmhmgkrsv/0/0-raw.fif...
 Isotrak not found
     Range : 2884000 ... 5391000 =  28840.000 ... 53910.000 secs
 Ready.
-Opening raw data file /tmp/tmpej2cwuxz/1/1-raw.fif...
+Opening raw data file /tmp/tmpmhmgkrsv/1/1-raw.fif...
 Isotrak not found
     Range : 1975000 ... 5235000 =  19750.000 ... 52350.000 secs
 Ready.
 Reading 0 ... 2507000  =      0.000 ... 25070.000 secs...
-Writing /tmp/tmpej2cwuxz/0/0-raw.fif
-Closing /tmp/tmpej2cwuxz/0/0-raw.fif
+Writing /tmp/tmpmhmgkrsv/0/0-raw.fif
+Closing /tmp/tmpmhmgkrsv/0/0-raw.fif
 [done]
 /home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:700: UserWarning: The number of saved datasets (1) does not match the number of existing subdirectories (2). You may now encounter a mix of differently preprocessed datasets!
   warnings.warn(f"The number of saved datasets ({i_ds+1+offset}) "
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpej2cwuxz contains other subdirectories or files ['1'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpmhmgkrsv contains other subdirectories or files ['1'].
   warnings.warn(f'Chosen directory {path} contains other '
 Reading 0 ... 3260000  =      0.000 ... 32600.000 secs...
-Writing /tmp/tmpej2cwuxz/1/1-raw.fif
-Closing /tmp/tmpej2cwuxz/1/1-raw.fif
+Writing /tmp/tmpmhmgkrsv/1/1-raw.fif
+Closing /tmp/tmpmhmgkrsv/1/1-raw.fif
 [done]
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpej2cwuxz contains other subdirectories or files ['0'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpmhmgkrsv contains other subdirectories or files ['0'].
   warnings.warn(f'Chosen directory {path} contains other '
-Opening raw data file /tmp/tmpej2cwuxz/0/0-raw.fif...
+Opening raw data file /tmp/tmpmhmgkrsv/0/0-raw.fif...
 Isotrak not found
     Range : 2884000 ... 5391000 =  28840.000 ... 53910.000 secs
 Ready.
-Opening raw data file /tmp/tmpej2cwuxz/1/1-raw.fif...
+Opening raw data file /tmp/tmpmhmgkrsv/1/1-raw.fif...
 Isotrak not found
     Range : 1975000 ... 5235000 =  19750.000 ... 52350.000 secs
 Ready.
@@ -1311,19 +1284,19 @@
 EDF file detected
 Setting channel info structure...
 Creating raw.info structure...
-Opening raw data file /tmp/tmpjf9zhor8/0/0-raw.fif...
+Opening raw data file /tmp/tmp5_t3lhz9/0/0-raw.fif...
 Isotrak not found
     Range : 2884000 ... 5391000 =  28840.000 ... 53910.000 secs
 Ready.
-Opening raw data file /tmp/tmpjf9zhor8/1/1-raw.fif...
+Opening raw data file /tmp/tmp5_t3lhz9/1/1-raw.fif...
 Isotrak not found
     Range : 1975000 ... 5235000 =  19750.000 ... 52350.000 secs
 Ready.
-Opening raw data file /tmp/tmpjf9zhor8/0/0-raw.fif...
+Opening raw data file /tmp/tmp5_t3lhz9/0/0-raw.fif...
 Isotrak not found
     Range : 2884000 ... 5391000 =  28840.000 ... 53910.000 secs
 Ready.
-Opening raw data file /tmp/tmpjf9zhor8/1/1-raw.fif...
+Opening raw data file /tmp/tmp5_t3lhz9/1/1-raw.fif...
 Isotrak not found
     Range : 1975000 ... 5235000 =  19750.000 ... 52350.000 secs
 Ready.
@@ -1396,8 +1369,8 @@
 Depending on available resources (e.g. in limited memory settings), it might
 therefore be more advantageous to use both parallelization and serialization
 together.

-

Total running time of the script: (1 minutes 43.430 seconds)

-

Estimated memory usage: 156 MB

+

Total running time of the script: (1 minutes 27.521 seconds)

+

Estimated memory usage: 240 MB

-

Total running time of the script: (0 minutes 2.871 seconds)

-

Estimated memory usage: 10 MB

+

Total running time of the script: (0 minutes 2.209 seconds)

+

Estimated memory usage: 9 MB

We save the dataset to a an existing directory. It will create a ‘.fif’ file @@ -600,41 +600,41 @@ )

-
Writing /tmp/tmpl8p_rszc/0/0-raw.fif
-Closing /tmp/tmpl8p_rszc/0/0-raw.fif
+
Writing /tmp/tmpvkqehedo/0/0-raw.fif
+Closing /tmp/tmpvkqehedo/0/0-raw.fif
 [done]
-Writing /tmp/tmpl8p_rszc/1/1-raw.fif
-Closing /tmp/tmpl8p_rszc/1/1-raw.fif
+Writing /tmp/tmpvkqehedo/1/1-raw.fif
+Closing /tmp/tmpvkqehedo/1/1-raw.fif
 [done]
-Writing /tmp/tmpl8p_rszc/2/2-raw.fif
-Closing /tmp/tmpl8p_rszc/2/2-raw.fif
+Writing /tmp/tmpvkqehedo/2/2-raw.fif
+Closing /tmp/tmpvkqehedo/2/2-raw.fif
 [done]
-Writing /tmp/tmpl8p_rszc/3/3-raw.fif
-Closing /tmp/tmpl8p_rszc/3/3-raw.fif
+Writing /tmp/tmpvkqehedo/3/3-raw.fif
+Closing /tmp/tmpvkqehedo/3/3-raw.fif
 [done]
-Writing /tmp/tmpl8p_rszc/4/4-raw.fif
-Closing /tmp/tmpl8p_rszc/4/4-raw.fif
+Writing /tmp/tmpvkqehedo/4/4-raw.fif
+Closing /tmp/tmpvkqehedo/4/4-raw.fif
 [done]
-Writing /tmp/tmpl8p_rszc/5/5-raw.fif
-Closing /tmp/tmpl8p_rszc/5/5-raw.fif
+Writing /tmp/tmpvkqehedo/5/5-raw.fif
+Closing /tmp/tmpvkqehedo/5/5-raw.fif
 [done]
-Writing /tmp/tmpl8p_rszc/6/6-raw.fif
-Closing /tmp/tmpl8p_rszc/6/6-raw.fif
+Writing /tmp/tmpvkqehedo/6/6-raw.fif
+Closing /tmp/tmpvkqehedo/6/6-raw.fif
 [done]
-Writing /tmp/tmpl8p_rszc/7/7-raw.fif
-Closing /tmp/tmpl8p_rszc/7/7-raw.fif
+Writing /tmp/tmpvkqehedo/7/7-raw.fif
+Closing /tmp/tmpvkqehedo/7/7-raw.fif
 [done]
-Writing /tmp/tmpl8p_rszc/8/8-raw.fif
-Closing /tmp/tmpl8p_rszc/8/8-raw.fif
+Writing /tmp/tmpvkqehedo/8/8-raw.fif
+Closing /tmp/tmpvkqehedo/8/8-raw.fif
 [done]
-Writing /tmp/tmpl8p_rszc/9/9-raw.fif
-Closing /tmp/tmpl8p_rszc/9/9-raw.fif
+Writing /tmp/tmpvkqehedo/9/9-raw.fif
+Closing /tmp/tmpvkqehedo/9/9-raw.fif
 [done]
-Writing /tmp/tmpl8p_rszc/10/10-raw.fif
-Closing /tmp/tmpl8p_rszc/10/10-raw.fif
+Writing /tmp/tmpvkqehedo/10/10-raw.fif
+Closing /tmp/tmpvkqehedo/10/10-raw.fif
 [done]
-Writing /tmp/tmpl8p_rszc/11/11-raw.fif
-Closing /tmp/tmpl8p_rszc/11/11-raw.fif
+Writing /tmp/tmpvkqehedo/11/11-raw.fif
+Closing /tmp/tmpvkqehedo/11/11-raw.fif
 [done]
 
@@ -652,11 +652,11 @@ )
-
Opening raw data file /tmp/tmpl8p_rszc/1/1-raw.fif...
+
Opening raw data file /tmp/tmpvkqehedo/1/1-raw.fif...
     Range : 0 ... 3868 =      0.000 ...   386.800 secs
 Ready.
 Reading 0 ... 3868  =      0.000 ...   386.800 secs...
-Opening raw data file /tmp/tmpl8p_rszc/3/3-raw.fif...
+Opening raw data file /tmp/tmpvkqehedo/3/3-raw.fif...
     Range : 0 ... 3868 =      0.000 ...   386.800 secs
 Ready.
 Reading 0 ... 3868  =      0.000 ...   386.800 secs...
@@ -731,15 +731,15 @@
 )
 
-
Writing /tmp/tmpl8p_rszc/0/0-raw.fif
-Closing /tmp/tmpl8p_rszc/0/0-raw.fif
+
Writing /tmp/tmpvkqehedo/0/0-raw.fif
+Closing /tmp/tmpvkqehedo/0/0-raw.fif
 [done]
-Writing /tmp/tmpl8p_rszc/1/1-raw.fif
-Closing /tmp/tmpl8p_rszc/1/1-raw.fif
+Writing /tmp/tmpvkqehedo/1/1-raw.fif
+Closing /tmp/tmpvkqehedo/1/1-raw.fif
 [done]
 /home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:700: UserWarning: The number of saved datasets (2) does not match the number of existing subdirectories (12). You may now encounter a mix of differently preprocessed datasets!
   warnings.warn(f"The number of saved datasets ({i_ds+1+offset}) "
-/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpl8p_rszc contains other subdirectories or files ['8', '7', '10', '5', '4', '9', '3', '2', '6', '11'].
+/home/runner/work/braindecode/braindecode/braindecode/datasets/base.py:708: UserWarning: Chosen directory /tmp/tmpvkqehedo contains other subdirectories or files ['8', '7', '10', '5', '4', '9', '3', '2', '6', '11'].
   warnings.warn(f'Chosen directory {path} contains other '
 
@@ -756,7 +756,7 @@ windows_dataset_loaded.description
-
Opening raw data file /tmp/tmpl8p_rszc/0/0-raw.fif...
+
Opening raw data file /tmp/tmpvkqehedo/0/0-raw.fif...
     Range : 0 ... 3868 =      0.000 ...   386.800 secs
 Ready.
 
@@ -797,8 +797,8 @@

-

Total running time of the script: (0 minutes 6.845 seconds)

-

Estimated memory usage: 269 MB

+

Total running time of the script: (0 minutes 5.025 seconds)

+

Estimated memory usage: 10 MB


-

Total running time of the script: (0 minutes 1.938 seconds)

-

Estimated memory usage: 10 MB

+

Total running time of the script: (0 minutes 1.455 seconds)

+

Estimated memory usage: 9 MB

-
{'0': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b71546b00>, '1': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b714d55d0>, '2': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b714d6380>, '3': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b714d61d0>, '4': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b714d75e0>, '5': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b714d54e0>}
+
{'0': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312dda4e20>, '1': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312dda6fb0>, '2': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312dda68f0>, '3': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312dda6b60>, '4': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb0e50>, '5': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb0dc0>}
 
@@ -719,7 +719,7 @@

By row indexsplits["0"].description

-
{'0': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b715463b0>}
+
{'0': <braindecode.datasets.base.BaseConcatDataset object at 0x7f3130eed3c0>}
 
@@ -779,7 +779,7 @@

By row indexsplits["2"].description

-
{'0': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b714d6410>, '1': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b714d5bd0>, '2': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b714d7880>}
+
{'0': <braindecode.datasets.base.BaseConcatDataset object at 0x7f3130eee6b0>, '1': <braindecode.datasets.base.BaseConcatDataset object at 0x7f3130eed4e0>, '2': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb22f0>}
 
@@ -857,7 +857,7 @@

By row indexsplits["test"].description

-
{'train': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b714d5c90>, 'valid': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b714d5090>, 'test': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b714d4580>}
+
{'train': <braindecode.datasets.base.BaseConcatDataset object at 0x7f3130eed3c0>, 'valid': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb0a90>, 'test': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb3340>}
 
@@ -973,20 +973,20 @@

Observation

Using description info
-{'0': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8153e050>, '1': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8153c730>, '2': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8153ef80>, '3': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8153c760>, '4': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8153f9a0>, '5': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8153d270>}
+{'0': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb19c0>, '1': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb1090>, '2': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb1e40>, '3': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb3a00>, '4': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb0af0>, '5': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb2680>}
 
 Splitting by row index
-{'0': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8153e3e0>}
+{'0': <braindecode.datasets.base.BaseConcatDataset object at 0x7f3130eef9d0>}
 
 Multiple row index split
-{'0': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8153f4f0>, '1': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8153f760>}
+{'0': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb2680>, '1': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb0af0>}
 
 Specifying keys
-{'train': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8153efb0>, 'test': <braindecode.datasets.base.BaseConcatDataset object at 0x7f4b8153e7a0>}
+{'train': <braindecode.datasets.base.BaseConcatDataset object at 0x7f3130eed3c0>, 'test': <braindecode.datasets.base.BaseConcatDataset object at 0x7f312ddb3a00>}
 
-

Total running time of the script: (0 minutes 6.562 seconds)

-

Estimated memory usage: 295 MB

+

Total running time of the script: (0 minutes 4.817 seconds)

+

Estimated memory usage: 9 MB

-

Total running time of the script: (0 minutes 4.127 seconds)

+

Total running time of the script: (0 minutes 3.176 seconds)

Estimated memory usage: 10 MB