From c6c4871665a9a8a4294d6ae175b45bf753c0121a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Rub=C3=A9n=20Chaves?= Date: Tue, 12 Nov 2024 15:12:09 +0100 Subject: [PATCH] 2024.2 --- README.md | 12 ++++++------ biobb_mem/__init__.py | 2 +- biobb_mem/docs/source/change_log.md | 2 +- biobb_mem/docs/source/conf.py | 4 ++-- biobb_mem/docs/source/readme.md | 12 ++++++------ biobb_mem/docs/source/schema.html | 2 +- biobb_mem/json_schemas/biobb_mem.json | 2 +- setup.py | 2 +- 8 files changed, 19 insertions(+), 19 deletions(-) diff --git a/README.md b/README.md index bbe1e6e..bafaccd 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ [![](https://img.shields.io/conda/vn/bioconda/biobb_mem?label=Conda)](https://anaconda.org/bioconda/biobb_mem) [![](https://img.shields.io/conda/dn/bioconda/biobb_mem?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_mem) [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_mem?tab=tags) -[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_mem:5.0.0--pyhdfd78af_0) +[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_mem:5.0.1--pyhdfd78af_0) [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_mem) [![](https://img.shields.io/pypi/pyversions/biobb-mem.svg?label=Python%20Versions)](https://pypi.org/project/biobb-mem/) @@ -51,7 +51,7 @@ Using PIP: * Installation: - pip install "biobb_mem>=5.0.0" + pip install "biobb_mem>=5.0.1" * Usage: [Python API documentation](https://biobb-mem.readthedocs.io/en/latest/modules.html) @@ -61,7 +61,7 @@ Using ANACONDA: * Installation: - conda install -c bioconda "biobb_mem>=5.0.0" + conda install -c bioconda "biobb_mem>=5.0.1" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-mem.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-mem.readthedocs.io/en/latest/command_line.html) @@ -71,13 +71,13 @@ Using DOCKER: * Installation: - docker pull quay.io/biocontainers/biobb_mem:5.0.0--pyhdfd78af_0 + docker pull quay.io/biocontainers/biobb_mem:5.0.1--pyhdfd78af_0 * Usage: - docker run quay.io/biocontainers/biobb_mem:5.0.0--pyhdfd78af_0 + docker run quay.io/biocontainers/biobb_mem:5.0.1--pyhdfd78af_0 Using SINGULARITY: @@ -87,7 +87,7 @@ Using SINGULARITY: * Installation: - singularity pull --name biobb_mem.sif https://depot.galaxyproject.org/singularity/biobb_mem:5.0.0--pyhdfd78af_0 + singularity pull --name biobb_mem.sif https://depot.galaxyproject.org/singularity/biobb_mem:5.0.1--pyhdfd78af_0 * Usage: diff --git a/biobb_mem/__init__.py b/biobb_mem/__init__.py index 159a4d5..eec9868 100644 --- a/biobb_mem/__init__.py +++ b/biobb_mem/__init__.py @@ -1,3 +1,3 @@ name = "biobb_mem" __all__ = ["ambertools", "lipyphilic_biobb", "mdanalysis_biobb"] -__version__ = "5.0.0" +__version__ = "5.0.1" diff --git a/biobb_mem/docs/source/change_log.md b/biobb_mem/docs/source/change_log.md index 35cb2cb..15cbb0b 100644 --- a/biobb_mem/docs/source/change_log.md +++ b/biobb_mem/docs/source/change_log.md @@ -1,7 +1,7 @@ # Biobb Membrane changelog -## What's new in version [5.0.0](https://github.com/bioexcel/biobb_mem/releases/tag/v5.0.0)? +## What's new in version [5.0.1](https://github.com/bioexcel/biobb_mem/releases/tag/v5.0.1)? New package for membrane structure analysis. ### New features diff --git a/biobb_mem/docs/source/conf.py b/biobb_mem/docs/source/conf.py index d64e6a9..53af6ff 100644 --- a/biobb_mem/docs/source/conf.py +++ b/biobb_mem/docs/source/conf.py @@ -76,9 +76,9 @@ # built documents. # # The short X.Y version. -version = u'5.0.0' +version = u'5.0.1' # The full version, including alpha/beta/rc tags. -release = u'5.0.0' +release = u'5.0.1' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/biobb_mem/docs/source/readme.md b/biobb_mem/docs/source/readme.md index bbe1e6e..bafaccd 100644 --- a/biobb_mem/docs/source/readme.md +++ b/biobb_mem/docs/source/readme.md @@ -3,7 +3,7 @@ [![](https://img.shields.io/conda/vn/bioconda/biobb_mem?label=Conda)](https://anaconda.org/bioconda/biobb_mem) [![](https://img.shields.io/conda/dn/bioconda/biobb_mem?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_mem) [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_mem?tab=tags) -[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_mem:5.0.0--pyhdfd78af_0) +[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_mem:5.0.1--pyhdfd78af_0) [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_mem) [![](https://img.shields.io/pypi/pyversions/biobb-mem.svg?label=Python%20Versions)](https://pypi.org/project/biobb-mem/) @@ -51,7 +51,7 @@ Using PIP: * Installation: - pip install "biobb_mem>=5.0.0" + pip install "biobb_mem>=5.0.1" * Usage: [Python API documentation](https://biobb-mem.readthedocs.io/en/latest/modules.html) @@ -61,7 +61,7 @@ Using ANACONDA: * Installation: - conda install -c bioconda "biobb_mem>=5.0.0" + conda install -c bioconda "biobb_mem>=5.0.1" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-mem.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-mem.readthedocs.io/en/latest/command_line.html) @@ -71,13 +71,13 @@ Using DOCKER: * Installation: - docker pull quay.io/biocontainers/biobb_mem:5.0.0--pyhdfd78af_0 + docker pull quay.io/biocontainers/biobb_mem:5.0.1--pyhdfd78af_0 * Usage: - docker run quay.io/biocontainers/biobb_mem:5.0.0--pyhdfd78af_0 + docker run quay.io/biocontainers/biobb_mem:5.0.1--pyhdfd78af_0 Using SINGULARITY: @@ -87,7 +87,7 @@ Using SINGULARITY: * Installation: - singularity pull --name biobb_mem.sif https://depot.galaxyproject.org/singularity/biobb_mem:5.0.0--pyhdfd78af_0 + singularity pull --name biobb_mem.sif https://depot.galaxyproject.org/singularity/biobb_mem:5.0.1--pyhdfd78af_0 * Usage: diff --git a/biobb_mem/docs/source/schema.html b/biobb_mem/docs/source/schema.html index 2f05128..db051e9 100644 --- a/biobb_mem/docs/source/schema.html +++ b/biobb_mem/docs/source/schema.html @@ -10,7 +10,7 @@ "applicationSubCategory": "http://www.edamontology.org/topic_3892", "citation": "https://www.nature.com/articles/s41597-019-0177-4", "license": "https://www.apache.org/licenses/LICENSE-2.0", - "softwareVersion": "5.0.0", + "softwareVersion": "5.0.1", "applicationSuite": "BioBB BioExcel Building Blocks", "codeRepository": "https://github.com/bioexcel/biobb_mem", "isAccessibleForFree": "True", diff --git a/biobb_mem/json_schemas/biobb_mem.json b/biobb_mem/json_schemas/biobb_mem.json index fdc1b5c..fbb6ba4 100644 --- a/biobb_mem/json_schemas/biobb_mem.json +++ b/biobb_mem/json_schemas/biobb_mem.json @@ -6,7 +6,7 @@ "conda": "", "docker": "", "singularity": "", - "version": "5.0.0", + "version": "5.0.1", "tools" : [ { "block" : "MDAHole", diff --git a/setup.py b/setup.py index a04838f..454f183 100644 --- a/setup.py +++ b/setup.py @@ -5,7 +5,7 @@ setuptools.setup( name="biobb_mem", - version="5.0.0", + version="5.0.1", author="Biobb developers", author_email="ruben.chaves@irbbarcelona.org", description="Biobb_mem is a complete code template to promote and facilitate the creation of new Biobbs by the community.",