Ison, J. et al. (2019). The bio.tools registry of software tools and data resources for the life sciences. Genome Biology, doi:10.1186/s13059-019-1772-6
Ison, J. et al. (2019). Community curation of bioinformatics software and data resources. Briefings in Bioinformatics. doi:10.1093/bib/bbz075
Tsiamis, V. et al. (2019) A Thousand and One Software for Proteomics: Tales of the Toolmakers of Science. Journal of Proteome Research. doi:10.1021/acs.jproteome.9b00219
Palmblad, M., Lamprecht, A-L, Ison, J. and Schwammle, V. (2018) Automated workflow composition in mass spectrometry based proteomics Bioinformatics doi:10.1093/bioinformatics/bty646
Hillion K.H., Kuzmin I., Khodak A., Rasche E., Crusoe M., Peterson H., Ison J., Ménager, H. (2017). Using bio.tools to generate and annotate workbench tool descriptions F1000Research (article). doi:10.12688/f1000research.12974.1
Doppelt-Azeroual, O., Mareuil, F., Deveaud, Kalaš, M., Soranzo, N., van den Beek, M., Grüning, B., Ison, J. and Ménager, H. (2017). ReGaTE: Registration of Galaxy Tools in Elixir GigaScience, doi:10.1093/gigascience/gix022
Ménager, H., Kalaš, M., Rapacki, K. and Ison, J. (2016). Using registries to integrate bioinformatics tools and services into workbench environments Int J Softw Tools Technol Transfer, doi:10.1007/s10009-015-0392-z
Ison, J. et al. (2015). Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research, doi: 10.1093/nar/gkv1116
Ison, J., Kalaš, M., Jonassen, I., Bolser, D., Uludag, M., McWilliam, H., Malone, J., Lopez, R., Pettifer, S. and Rice, P. (2013). EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats Bioinformatics, doi: 10.1093/bioinformatics/btt113
If you use bio.tools, please cite:
Ison, J. et al. (2015). Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research. doi: 10.1093/nar/gkv1116
If you use EDAM or its part, please cite:
Ison, J., Kalaš, M., Jonassen, I., Bolser, D., Uludag, M., McWilliam, H., Malone, J., Lopez, R., Pettifer, S. and Rice, P. (2013). EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats Bioinformatics, doi: 10.1093/bioinformatics/btt113