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Provide the number of k-mers in the query #13

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graceblackwell opened this issue Aug 3, 2020 · 3 comments
Open

Provide the number of k-mers in the query #13

graceblackwell opened this issue Aug 3, 2020 · 3 comments

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@graceblackwell
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Could the number of k-mers in the query be included in the output so the user can calculate the percentage of the query in each dataset (or provide the percentage as well)?

@bingmann
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bingmann commented Aug 3, 2020

Maybe we should define a better output format.

@graceblackwell
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Yeah could be useful! Would be nice to have it write to a file as well. Could do something like bigsi? Though have the query header instead of the query sequence

@iqbal-lab
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Output format an excellent idea.

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