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Minder3D

Using AI to foster innovation in the exploration of radiological images.

Installing in a end-user system (without a python already installed)

Download the installation package for current release from [work-in-progress]

Installing and Running in a Python Environment

pip install minder3d

Running

minder3d

Installing the Development Environment

Create a virtual environment

python3 -m venv venv

Activate that environment, proper syntax depends on platform. For linux

source venv/bin/activate

For windows running gitbash

. ./venv/scripts/activate

Install the test-build of ITK, ITKMinimalPathExtraction ITKTubetk:

python -m pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple/ --upgrade itk itk-minimalpathextraction itk-tubetk

Get the Minder3D source code

git clone https://github.com/aylward/Minder3D

Setup for editable installation. Changes to code in src are immediatelly reflected in the installed version. Also installs all dependencies needed for development and testing:

cd Minder3D
pip install -e .[dev]

Prior to making a commit, please verify your code is compliant:

pre-commit run --all-files

HINTS

QT Designer was used to define the layout. On Windows, to launch designer, use this command:

qt6-tools.exe designer pytubeview.ui