Version 2.0 - November 2019:
Included TF footprinting, optional discarding of blacklisted genomic regions, motif analysis
Updated summary statistics incorporating support for ATAQV package (https://github.com/ParkerLab/ataqv)
Discarded R package ATACseqQC (https://bioconductor.org/packages/release/bioc/html/ATACseqQC.html) and corresponding operations, mainly due to its time complexity and reliability issues.