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Complete input features for certain commands #3

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axiezai opened this issue Feb 24, 2020 · 5 comments
Open

Complete input features for certain commands #3

axiezai opened this issue Feb 24, 2020 · 5 comments
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bug Something isn't working enhancement New feature or request good first issue Good for newcomers

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axiezai commented Feb 24, 2020 •
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All commands should have adequate inputs now, but some are missing full functionality
@axiezai axiezai added enhancement New feature or request good first issue Good for newcomers labels Feb 24, 2020
@axiezai axiezai self-assigned this Feb 24, 2020
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axiezai commented Jun 1, 2020

Add rpe-pair and rpe-all conditions

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axiezai commented Jul 21, 2020

rpe-all added 266850d

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axiezai commented Oct 21, 2021

Add fslreorient2std for datasets saved in non-fsl compatible coordinate systems

@axiezai axiezai added the bug Something isn't working label Oct 21, 2021
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axiezai commented Oct 29, 2021 •
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add gradient check and re-export gradients after reorienting DWI:
https://community.mrtrix.org/t/reorienting-dwi-data-and-bvecs/5266

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axiezai commented Oct 29, 2021 •
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implement rpe_pair.

$ mrcat b0_ap.mif b0_pa.mif b0_pair.mif -axis 3; dwifslpreproc DWI_in.mif DWI_out.mif -rpe_pair -se_epi b0_pair.mif -pe_dir ap -readout_time 0.72 -align_seepi

See rob's comment here: https://community.mrtrix.org/t/dwipreproc-register-fieldmap-to-dwi-other-questions/621/4

axiezai added a commit that referenced this issue Nov 12, 2021
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add fslreorient2std for #3
0a8528c
@axiezai axiezai mentioned this issue Nov 12, 2021
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